Wall clock time and date at job start Mon Mar 30 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29462 * 1 3 3 Si 1.86802 * 119.99643 * 2 1 4 4 H 1.48496 * 109.47123 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46861 * 120.00130 * 3 2 1 6 6 H 1.48502 * 109.47025 * 239.99744 * 3 2 1 7 7 C 1.46653 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00088 * 156.24205 * 7 2 1 9 9 C 1.39411 * 119.99479 * 336.24227 * 7 2 1 10 10 C 1.41661 * 120.66383 * 335.55205 * 9 7 2 11 11 C 1.35928 * 119.84315 * 179.71663 * 10 9 7 12 12 Cl 1.73601 * 119.34074 * 180.30090 * 11 10 9 13 13 C 1.39398 * 121.31549 * 0.59794 * 11 10 9 14 14 C 1.37682 * 121.39853 * 359.67791 * 13 11 10 15 15 N 1.48020 * 119.98530 * 180.02562 * 14 13 11 16 16 O 1.31700 * 119.99980 * 2.85984 * 15 14 13 17 17 O 1.31703 * 119.99645 * 182.86111 * 15 14 13 18 18 C 1.39240 * 120.02777 * 0.02562 * 14 13 11 19 19 N 1.37549 * 120.63431 * 179.97438 * 18 14 13 20 20 H 0.97001 * 119.99925 * 174.57370 * 1 2 3 21 21 H 1.07999 * 120.07530 * 0.02814 * 10 9 7 22 22 H 1.08003 * 119.30176 * 179.71112 * 13 11 10 23 23 H 0.96998 * 120.00005 * 331.52116 * 19 18 14 24 24 H 0.97002 * 120.00073 * 151.51445 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2285 1.6178 0.0000 4 1 1.2635 2.7464 -0.0006 5 1 3.0823 1.6965 1.2125 6 1 3.0823 1.6965 -1.2125 7 6 2.0280 -1.2700 -0.0006 8 1 3.0393 -1.3094 -0.3774 9 6 1.4195 -2.4264 0.4853 10 6 0.3602 -2.3462 1.4224 11 6 -0.2250 -3.4842 1.8808 12 17 -1.5273 -3.3705 3.0231 13 6 0.2039 -4.7410 1.4567 14 6 1.2323 -4.8803 0.5520 15 7 1.6621 -6.2301 0.1227 16 8 1.0243 -7.2952 0.5624 17 8 2.6824 -6.3660 -0.6990 18 6 1.8684 -3.7521 0.0408 19 7 2.8975 -3.8768 -0.8631 20 1 -0.4850 -0.8363 -0.0794 21 1 0.0150 -1.3830 1.7680 22 1 -0.2813 -5.6241 1.8456 23 1 3.4590 -4.6677 -0.8527 24 1 3.0617 -3.1740 -1.5112 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716094.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:52 Heat of formation + Delta-G solvation = 17.811739 kcal Electronic energy + Delta-G solvation = -14865.514771 eV Core-core repulsion = 12001.131196 eV Total energy + Delta-G solvation = -2864.383575 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.13754 -37.36455 -35.91233 -34.56271 -34.06865 -33.08942 -30.54203 -28.57253 -25.66904 -25.14781 -21.52348 -21.17211 -18.87552 -17.37186 -16.94155 -16.49410 -16.23452 -15.17400 -14.56995 -14.37639 -14.29662 -13.29089 -12.87242 -12.48784 -11.74063 -11.58549 -11.32704 -11.14350 -10.77809 -10.60173 -10.46587 -10.31092 -10.07458 -9.99588 -9.72729 -9.43447 -8.62193 -7.99822 -7.27803 -4.91668 0.26810 2.06249 2.11184 2.27146 2.81152 2.86522 2.98935 3.02770 3.50883 3.85205 4.40402 4.60666 5.47969 5.62790 6.04604 6.17272 6.54666 6.61538 6.77302 6.91469 7.12423 7.26661 7.35324 7.61629 7.79145 7.92302 8.08279 8.26759 9.27471 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.009682 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.974854 B = 2891.182769 C = 4115.235704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.032 3.968 3 Si 1.077 2.923 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.465 4.465 8 H 0.095 0.905 9 C 0.064 3.936 10 C -0.237 4.237 11 C 0.033 3.967 12 Cl -0.103 7.103 13 C -0.230 4.230 14 C -0.011 4.011 15 N 0.025 4.975 16 O -0.238 6.238 17 O -0.260 6.260 18 C 0.206 3.794 19 N -0.831 5.831 20 H 0.313 0.687 21 H 0.128 0.872 22 H 0.127 0.873 23 H 0.407 0.593 24 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 3.506 0.048 4.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.199 4.199 3 Si 0.898 3.102 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.113 0.887 9 C 0.058 3.942 10 C -0.259 4.259 11 C 0.004 3.996 12 Cl -0.074 7.074 13 C -0.252 4.252 14 C -0.109 4.109 15 N 0.474 4.526 16 O -0.415 6.415 17 O -0.427 6.427 18 C 0.092 3.908 19 N -0.381 5.381 20 H 0.129 0.871 21 H 0.146 0.854 22 H 0.145 0.855 23 H 0.246 0.754 24 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.625 5.453 0.327 5.700 hybrid contribution 0.319 -2.288 -0.227 2.321 sum 1.944 3.166 0.099 3.716 Atomic orbital electron populations 1.69956 1.08798 1.35909 1.20509 1.28949 0.95298 1.04672 0.91014 0.83450 0.75712 0.72216 0.78852 1.19120 1.19125 1.19298 1.21768 1.01628 0.92547 1.33011 0.88734 1.18193 0.94240 0.88684 0.93061 1.20510 1.04344 0.96898 1.04138 1.19639 0.91757 0.93574 0.94639 1.98290 1.49716 1.98573 1.60835 1.19255 1.02471 0.96704 1.06729 1.19453 1.04465 0.76632 1.10325 1.50315 0.99501 1.04651 0.98163 1.96178 1.56347 1.27472 1.61500 1.95925 1.18973 1.94370 1.33455 1.19183 0.89681 0.91676 0.90262 1.42574 1.33102 1.26844 1.35581 0.87125 0.85450 0.85528 0.75403 0.77054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -15.71 12.31 55.99 0.69 -15.02 14 2 C 0.03 0.64 5.16 -15.16 -0.08 0.56 14 3 Si 1.08 16.83 30.08 -169.99 -5.11 11.72 14 4 H -0.27 -4.24 7.11 56.52 0.40 -3.84 14 5 H -0.27 -4.08 7.11 56.52 0.40 -3.68 14 6 H -0.27 -3.92 7.11 56.52 0.40 -3.52 14 7 C -0.46 -9.60 8.73 -35.75 -0.31 -9.91 14 8 H 0.09 1.81 7.41 -52.49 -0.39 1.42 14 9 C 0.06 1.41 5.54 -104.67 -0.58 0.83 14 10 C -0.24 -5.20 7.65 -39.10 -0.30 -5.50 14 11 C 0.03 0.70 6.26 -39.98 -0.25 0.45 14 12 Cl -0.10 -1.94 28.90 -51.86 -1.50 -3.43 14 13 C -0.23 -5.11 9.30 -39.35 -0.37 -5.47 14 14 C -0.01 -0.24 6.90 -79.78 -0.55 -0.79 14 15 N 0.03 0.59 4.98 34.05 0.17 0.76 14 16 O -0.24 -5.73 19.12 -31.57 -0.60 -6.34 14 17 O -0.26 -5.82 16.52 -31.57 -0.52 -6.34 14 18 C 0.21 4.42 6.95 -81.45 -0.57 3.86 14 19 N -0.83 -15.18 8.16 33.73 0.28 -14.90 14 20 H 0.31 6.95 6.56 -40.82 -0.27 6.68 14 21 H 0.13 2.84 6.37 -52.49 -0.33 2.50 14 22 H 0.13 2.77 7.52 -52.48 -0.39 2.38 14 23 H 0.41 7.29 5.93 -40.82 -0.24 7.05 14 24 H 0.40 6.41 7.95 -40.82 -0.32 6.09 14 LS Contribution 239.64 15.07 3.61 3.61 Total: -1.00 -24.10 239.64 -6.74 -30.84 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.75 Total: 15.08 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -3.00 Total: -15.98 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 1.13 Total: -29.17 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.13 Total: -12.67 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.11 Total: 11.72 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.50 Total: -3.43 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -24.10 -6.74 -30.84 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716094.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.654 kcal (2) G-P(sol) polarization free energy of solvation -24.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds