Wall clock time and date at job start Mon Mar 30 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29462 * 1 3 3 Si 1.86802 * 119.99643 * 2 1 4 4 H 1.48496 * 109.47123 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46861 * 120.00130 * 3 2 1 6 6 H 1.48502 * 109.47025 * 239.99744 * 3 2 1 7 7 C 1.46653 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00088 * 156.24205 * 7 2 1 9 9 C 1.39411 * 119.99479 * 336.24227 * 7 2 1 10 10 C 1.41661 * 120.66383 * 335.55205 * 9 7 2 11 11 C 1.35928 * 119.84315 * 179.71663 * 10 9 7 12 12 Cl 1.73601 * 119.34074 * 180.30090 * 11 10 9 13 13 C 1.39398 * 121.31549 * 0.59794 * 11 10 9 14 14 C 1.37682 * 121.39853 * 359.67791 * 13 11 10 15 15 N 1.48020 * 119.98530 * 180.02562 * 14 13 11 16 16 O 1.31700 * 119.99980 * 2.85984 * 15 14 13 17 17 O 1.31703 * 119.99645 * 182.86111 * 15 14 13 18 18 C 1.39240 * 120.02777 * 0.02562 * 14 13 11 19 19 N 1.37549 * 120.63431 * 179.97438 * 18 14 13 20 20 H 0.97001 * 119.99925 * 174.57370 * 1 2 3 21 21 H 1.07999 * 120.07530 * 0.02814 * 10 9 7 22 22 H 1.08003 * 119.30176 * 179.71112 * 13 11 10 23 23 H 0.96998 * 120.00005 * 331.52116 * 19 18 14 24 24 H 0.97002 * 120.00073 * 151.51445 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2285 1.6178 0.0000 4 1 1.2635 2.7464 -0.0006 5 1 3.0823 1.6965 1.2125 6 1 3.0823 1.6965 -1.2125 7 6 2.0280 -1.2700 -0.0006 8 1 3.0393 -1.3094 -0.3774 9 6 1.4195 -2.4264 0.4853 10 6 0.3602 -2.3462 1.4224 11 6 -0.2250 -3.4842 1.8808 12 17 -1.5273 -3.3705 3.0231 13 6 0.2039 -4.7410 1.4567 14 6 1.2323 -4.8803 0.5520 15 7 1.6621 -6.2301 0.1227 16 8 1.0243 -7.2952 0.5624 17 8 2.6824 -6.3660 -0.6990 18 6 1.8684 -3.7521 0.0408 19 7 2.8975 -3.8768 -0.8631 20 1 -0.4850 -0.8363 -0.0794 21 1 0.0150 -1.3830 1.7680 22 1 -0.2813 -5.6241 1.8456 23 1 3.4590 -4.6677 -0.8527 24 1 3.0617 -3.1740 -1.5112 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716094.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:52 Heat of formation + Delta-G solvation = 5.121460 kcal Electronic energy + Delta-G solvation = -14866.065063 eV Core-core repulsion = 12001.131196 eV Total energy + Delta-G solvation = -2864.933867 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84039 -39.06970 -37.51468 -36.21443 -35.74993 -34.79345 -32.22459 -30.25320 -27.36004 -26.85240 -23.18820 -22.87297 -20.51233 -19.12731 -18.62672 -18.14806 -17.88870 -16.92808 -16.13286 -15.98420 -15.76494 -14.88634 -14.50820 -14.13248 -13.28102 -13.17062 -12.83019 -12.74630 -12.20851 -12.18068 -12.01581 -11.90534 -11.80806 -11.66290 -11.21606 -11.06308 -10.33304 -9.64251 -8.93381 -6.58442 -1.51237 0.36053 0.45042 0.56158 1.35098 1.55277 1.59098 1.84803 2.21302 2.32435 2.76308 2.93330 3.77182 3.91285 4.36976 4.49451 4.89410 4.93747 5.09217 5.21752 5.45948 5.57694 5.68774 5.91661 6.09636 6.27281 6.40577 6.74839 7.61010 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.009682 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.974854 B = 2891.182769 C = 4115.235704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.006 3.994 3 Si 1.124 2.876 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.245 1.245 7 C -0.450 4.450 8 H 0.117 0.883 9 C 0.046 3.954 10 C -0.261 4.261 11 C 0.041 3.959 12 Cl -0.085 7.085 13 C -0.262 4.262 14 C -0.023 4.023 15 N 0.026 4.974 16 O -0.298 6.298 17 O -0.253 6.253 18 C 0.224 3.776 19 N -0.804 5.804 20 H 0.303 0.697 21 H 0.122 0.878 22 H 0.119 0.881 23 H 0.413 0.587 24 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 5.876 -0.759 6.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.221 4.221 3 Si 0.938 3.062 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.168 1.168 7 C -0.474 4.474 8 H 0.135 0.865 9 C 0.040 3.960 10 C -0.284 4.284 11 C 0.012 3.988 12 Cl -0.056 7.056 13 C -0.284 4.284 14 C -0.123 4.123 15 N 0.463 4.537 16 O -0.458 6.458 17 O -0.421 6.421 18 C 0.105 3.895 19 N -0.355 5.355 20 H 0.118 0.882 21 H 0.139 0.861 22 H 0.137 0.863 23 H 0.252 0.748 24 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.072 7.662 -0.468 8.268 hybrid contribution -0.041 -2.684 -0.087 2.686 sum 3.031 4.977 -0.556 5.854 Atomic orbital electron populations 1.70041 1.09685 1.35402 1.20931 1.30305 0.95167 1.07143 0.89530 0.82905 0.74834 0.68374 0.80072 1.19779 1.18303 1.16822 1.22272 1.02208 0.92494 1.30451 0.86549 1.18436 0.94746 0.89077 0.93769 1.20416 1.05705 0.96605 1.05642 1.19690 0.91685 0.93171 0.94249 1.98284 1.48741 1.98532 1.60056 1.19185 1.03910 0.96742 1.08552 1.19661 1.05096 0.76629 1.10896 1.50323 0.99859 1.04778 0.98787 1.96169 1.57933 1.27801 1.63882 1.95866 1.18777 1.94441 1.33034 1.19341 0.89165 0.91305 0.89658 1.42642 1.31269 1.27342 1.34293 0.88229 0.86051 0.86297 0.74753 0.75260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -30.50 12.31 23.24 0.29 -30.22 14 2 C 0.01 0.24 5.16 87.24 0.45 0.69 14 3 Si 1.12 30.19 30.08 68.60 2.06 32.26 14 4 H -0.27 -7.66 7.11 99.48 0.71 -6.95 14 5 H -0.26 -6.69 7.11 99.48 0.71 -5.98 14 6 H -0.24 -5.73 7.11 99.48 0.71 -5.02 14 7 C -0.45 -17.13 8.73 24.75 0.22 -16.92 14 8 H 0.12 3.89 7.41 -2.91 -0.02 3.87 14 9 C 0.05 1.93 5.54 -19.90 -0.11 1.82 14 10 C -0.26 -11.34 7.65 22.58 0.17 -11.16 14 11 C 0.04 1.77 6.26 22.01 0.14 1.91 14 12 Cl -0.08 -3.19 28.90 -2.72 -0.08 -3.27 14 13 C -0.26 -11.88 9.30 22.42 0.21 -11.68 14 14 C -0.02 -1.03 6.90 36.48 0.25 -0.78 14 15 N 0.03 1.25 4.98 -46.20 -0.23 1.02 14 16 O -0.30 -15.01 19.12 3.51 0.07 -14.95 14 17 O -0.25 -11.17 16.52 3.51 0.06 -11.11 14 18 C 0.22 9.22 6.95 40.74 0.28 9.50 14 19 N -0.80 -27.07 8.16 -47.19 -0.39 -27.46 14 20 H 0.30 13.17 6.56 -92.71 -0.61 12.56 14 21 H 0.12 5.35 6.37 -2.91 -0.02 5.33 14 22 H 0.12 5.46 7.52 -2.91 -0.02 5.44 14 23 H 0.41 13.67 5.93 -92.71 -0.55 13.12 14 24 H 0.41 11.68 7.95 -92.71 -0.74 10.94 14 Total: -1.00 -50.59 239.64 3.55 -47.03 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.16 Total: 33.30 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 1.61 Total: -26.61 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.33 Total: -56.65 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: 0.13 Total: -26.06 kcal Atomic # 14 Polarization: 30.19 SS G_CDS: 2.06 Total: 32.26 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.08 Total: -3.27 kcal Total: -50.59 3.55 -47.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716094.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.156 kcal (2) G-P(sol) polarization free energy of solvation -50.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds