Wall clock time and date at job start Mon Mar 30 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29438 * 1 3 3 Si 1.86804 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47390 * 275.12539 * 3 2 1 5 5 H 1.48500 * 109.46861 * 35.12459 * 3 2 1 6 6 H 1.48501 * 109.47170 * 155.12223 * 3 2 1 7 7 C 1.46695 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00260 * 157.78169 * 7 2 1 9 9 C 1.39296 * 119.99407 * 338.05077 * 7 2 1 10 10 C 1.46894 * 120.67789 * 135.75621 * 9 7 2 11 11 N 1.37611 * 120.63226 * 359.97438 * 10 9 7 12 12 C 1.39053 * 118.72713 * 179.97438 * 10 9 7 13 13 C 1.37865 * 120.07117 * 0.02562 * 12 10 9 14 14 C 1.39053 * 121.44605 * 359.97198 * 13 12 10 15 15 N 1.48012 * 119.33865 * 180.02562 * 14 13 12 16 16 O 1.31696 * 120.00468 * 0.02562 * 15 14 13 17 17 O 1.31705 * 119.99583 * 180.02562 * 15 14 13 18 18 C 1.36105 * 121.31607 * 359.75959 * 14 13 12 19 19 Cl 1.73603 * 120.10056 * 180.29032 * 18 14 13 20 20 H 0.96999 * 120.00253 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00191 * 0.02562 * 11 10 9 22 22 H 0.97000 * 119.99892 * 179.97438 * 11 10 9 23 23 H 1.08002 * 119.96412 * 180.02562 * 12 10 9 24 24 H 1.08004 * 119.27810 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2944 0.0000 0.0000 3 14 2.2283 1.6178 0.0000 4 1 2.3676 2.1091 -1.3945 5 1 1.4841 2.6190 0.8056 6 1 3.5759 1.4115 0.5890 7 6 2.0279 -1.2704 -0.0006 8 1 3.0477 -1.3049 -0.3542 9 6 1.4072 -2.4331 0.4498 10 6 1.5432 -3.6920 -0.2948 11 7 2.2863 -3.7455 -1.4517 12 6 0.9067 -4.8285 0.1919 13 6 0.1647 -4.7615 1.3519 14 6 0.0325 -3.5725 2.0608 15 7 -0.7749 -3.5537 3.3011 16 8 -1.3591 -4.6558 3.7235 17 8 -0.9091 -2.4345 3.9824 18 6 0.6352 -2.4271 1.6397 19 17 0.4553 -0.9620 2.5534 20 1 -0.4850 0.8400 0.0004 21 1 2.7268 -2.9471 -1.7827 22 1 2.3703 -4.5818 -1.9360 23 1 0.9937 -5.7648 -0.3395 24 1 -0.3247 -5.6519 1.7181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716111.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:25 Heat of formation + Delta-G solvation = 38.183262 kcal Electronic energy + Delta-G solvation = -15132.945502 eV Core-core repulsion = 12269.445302 eV Total energy + Delta-G solvation = -2863.500200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.74413 -37.24248 -35.21079 -33.87074 -33.62357 -33.21524 -30.30330 -28.98432 -25.51247 -24.54533 -21.70663 -20.63415 -18.26555 -17.20831 -16.54806 -16.32894 -16.11880 -15.19928 -14.84464 -13.73073 -13.54814 -13.11413 -12.68333 -12.35158 -11.94277 -11.52687 -11.06874 -10.92299 -10.87206 -10.71969 -10.29368 -10.11947 -9.82558 -9.61965 -9.45209 -8.54338 -7.71302 -7.30869 -6.95447 -4.63568 0.53902 2.28415 2.40789 2.49074 2.86699 2.94769 2.97443 3.54600 3.70298 4.15761 4.54157 4.76839 5.61088 5.84515 5.97426 6.19116 6.58343 6.59127 6.71159 6.95188 7.06386 7.33239 7.75983 7.99249 8.07054 8.15655 8.32002 8.44648 9.77272 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.012356 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.722099 B = 2265.650740 C = 3265.076159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.090 3.910 3 Si 0.905 3.095 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.477 4.477 8 H 0.092 0.908 9 C 0.080 3.920 10 C 0.197 3.803 11 N -0.848 5.848 12 C -0.198 4.198 13 C -0.106 4.106 14 C -0.004 4.004 15 N 0.006 4.994 16 O -0.254 6.254 17 O -0.192 6.192 18 C -0.059 4.059 19 Cl -0.041 7.041 20 H 0.294 0.706 21 H 0.403 0.597 22 H 0.391 0.609 23 H 0.119 0.881 24 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.453 -1.509 -4.567 6.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.503 4.503 8 H 0.109 0.891 9 C 0.073 3.927 10 C 0.087 3.913 11 N -0.384 5.384 12 C -0.223 4.223 13 C -0.128 4.128 14 C -0.095 4.095 15 N 0.470 4.530 16 O -0.430 6.430 17 O -0.383 6.383 18 C -0.091 4.091 19 Cl -0.011 7.011 20 H 0.107 0.893 21 H 0.233 0.767 22 H 0.218 0.782 23 H 0.136 0.864 24 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.455 -1.305 -4.917 6.762 hybrid contribution 0.038 0.824 0.092 0.830 sum 4.492 -0.481 -4.825 6.610 Atomic orbital electron populations 1.69045 1.08929 1.31397 1.26045 1.27162 0.94252 1.01212 0.91302 0.86318 0.81511 0.80146 0.79246 1.19325 1.19448 1.17665 1.19924 0.99425 0.90199 1.40779 0.89059 1.17646 0.94616 0.91001 0.89421 1.19540 0.91613 0.94117 0.85985 1.41818 1.56486 1.14175 1.25950 1.19955 1.06402 0.96868 0.99118 1.19923 1.01952 0.95143 0.95790 1.19469 1.05024 0.97005 0.88046 1.50606 0.98363 1.01423 1.02639 1.96131 1.51713 1.19433 1.75728 1.96246 1.68793 1.15648 1.57614 1.20138 1.08213 0.85639 0.95106 1.98279 1.95617 1.35825 1.71427 0.89311 0.76686 0.78196 0.86352 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -17.26 11.45 56.00 0.64 -16.62 14 2 C 0.09 2.00 3.88 -15.15 -0.06 1.94 14 3 Si 0.90 16.96 29.69 -169.99 -5.05 11.91 14 4 H -0.27 -4.83 7.11 56.52 0.40 -4.43 14 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 6 H -0.25 -4.73 7.11 56.52 0.40 -4.33 14 7 C -0.48 -10.66 8.06 -35.78 -0.29 -10.95 14 8 H 0.09 1.88 7.65 -52.49 -0.40 1.48 14 9 C 0.08 1.83 5.47 -104.63 -0.57 1.26 14 10 C 0.20 3.84 6.97 -81.47 -0.57 3.27 14 11 N -0.85 -12.68 8.95 33.72 0.30 -12.38 14 12 C -0.20 -3.68 9.89 -39.42 -0.39 -4.07 14 13 C -0.11 -2.23 9.52 -39.42 -0.38 -2.61 14 14 C 0.00 -0.10 6.83 -80.41 -0.55 -0.65 14 15 N 0.01 0.16 4.98 33.73 0.17 0.33 14 16 O -0.25 -6.33 19.07 -31.57 -0.60 -6.93 14 17 O -0.19 -4.99 16.42 -31.57 -0.52 -5.51 14 18 C -0.06 -1.46 5.97 -38.97 -0.23 -1.69 14 19 Cl -0.04 -1.00 21.71 -51.86 -1.13 -2.13 14 20 H 0.29 6.37 8.27 -40.82 -0.34 6.03 14 21 H 0.40 5.84 7.65 -40.82 -0.31 5.53 14 22 H 0.39 4.49 8.83 -40.82 -0.36 4.13 14 23 H 0.12 1.77 8.06 -52.49 -0.42 1.34 14 24 H 0.13 2.48 7.49 -52.48 -0.39 2.08 14 LS Contribution 238.12 15.07 3.59 3.59 Total: -1.00 -27.46 238.12 -6.65 -34.11 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -1.02 Total: 7.11 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -3.03 Total: -13.49 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 1.11 Total: -28.67 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.12 Total: -12.44 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.05 Total: 11.91 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.13 Total: -2.13 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.46 -6.65 -34.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716111.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.292 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds