Wall clock time and date at job start Mon Mar 30 2020 05:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29496 * 1 3 3 Si 1.86800 * 119.99697 * 2 1 4 4 H 1.48502 * 109.47160 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47328 * 30.00514 * 3 2 1 6 6 H 1.48500 * 109.46993 * 150.00632 * 3 2 1 7 7 C 1.46556 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99870 * 166.42672 * 7 2 1 9 9 C 1.40186 * 120.00009 * 346.42003 * 7 2 1 10 10 C 1.41406 * 120.27695 * 335.53272 * 9 7 2 11 11 C 1.36367 * 119.97411 * 179.97438 * 10 9 7 12 12 C 1.38810 * 120.55393 * 0.02562 * 11 10 9 13 13 N 1.48017 * 119.72229 * 179.97438 * 12 11 10 14 14 O 1.31705 * 119.99747 * 6.47481 * 13 12 11 15 15 O 1.31692 * 120.00264 * 186.46932 * 13 12 11 16 16 C 1.39258 * 120.55909 * 359.97438 * 12 11 10 17 17 N 1.39771 * 119.99516 * 180.02562 * 16 12 11 18 18 C 1.38430 * 120.00691 * 359.97438 * 16 12 11 19 19 Cl 1.73600 * 120.27386 * 179.97438 * 18 16 12 20 20 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.01321 * 359.97438 * 10 9 7 22 22 H 1.07992 * 119.72172 * 180.28001 * 11 10 9 23 23 H 0.97007 * 120.00121 * 26.26331 * 17 16 12 24 24 H 0.96993 * 120.00103 * 206.26203 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2289 1.6178 0.0000 4 1 2.4763 2.0465 -1.4001 5 1 1.4264 2.6527 0.7001 6 1 3.5265 1.4402 0.6999 7 6 2.0278 -1.2692 -0.0006 8 1 3.0851 -1.2821 -0.2201 9 6 1.3563 -2.4664 0.2840 10 6 0.1685 -2.4527 1.0511 11 6 -0.4800 -3.6209 1.3237 12 6 0.0160 -4.8294 0.8545 13 7 -0.7025 -6.0865 1.1619 14 8 -1.8718 -6.0457 1.7666 15 8 -0.1726 -7.2457 0.8306 16 6 1.1838 -4.8692 0.0970 17 7 1.6725 -6.0927 -0.3699 18 6 1.8603 -3.6971 -0.1944 19 17 3.3171 -3.7388 -1.1376 20 1 -0.4850 0.8400 0.0004 21 1 -0.2250 -1.5173 1.4209 22 1 -1.3893 -3.6052 1.9061 23 1 1.0643 -6.8344 -0.5149 24 1 2.6197 -6.2001 -0.5491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716171.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:40 Heat of formation + Delta-G solvation = 15.616983 kcal Electronic energy + Delta-G solvation = -14844.655229 eV Core-core repulsion = 11980.176482 eV Total energy + Delta-G solvation = -2864.478747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.87753 -36.92503 -35.42014 -34.90949 -33.62354 -32.58620 -30.69507 -27.98922 -26.99146 -23.84912 -21.42485 -21.16110 -18.31389 -17.22767 -16.87846 -16.13772 -15.90491 -15.28052 -14.52072 -13.89296 -13.79284 -13.50745 -12.74542 -12.42640 -12.00158 -11.80992 -11.56934 -10.95163 -10.69380 -10.42862 -10.11786 -10.02000 -9.90791 -9.74902 -9.51962 -9.41061 -8.28112 -7.80219 -7.07530 -5.30581 0.76565 2.25185 2.52781 2.57706 2.64648 2.66118 2.77899 3.25714 3.37381 3.75511 4.53701 4.80466 5.76750 5.94610 6.11029 6.17463 6.41360 6.57335 6.88536 7.08328 7.21620 7.40285 7.60488 7.80595 7.92758 8.10058 8.32169 8.47371 9.04211 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.008580 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.286113 B = 3262.476641 C = 4145.354857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.059 3.941 3 Si 0.933 3.067 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.247 1.247 7 C -0.348 4.348 8 H 0.110 0.890 9 C 0.130 3.870 10 C -0.159 4.159 11 C -0.041 4.041 12 C -0.150 4.150 13 N 0.055 4.945 14 O -0.307 6.307 15 O -0.323 6.323 16 C 0.317 3.683 17 N -0.862 5.862 18 C -0.220 4.220 19 Cl -0.095 7.095 20 H 0.307 0.693 21 H 0.142 0.858 22 H 0.124 0.876 23 H 0.409 0.591 24 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 5.473 -1.630 7.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.174 4.174 3 Si 0.754 3.246 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.170 1.170 7 C -0.373 4.373 8 H 0.128 0.872 9 C 0.125 3.875 10 C -0.181 4.181 11 C -0.061 4.061 12 C -0.256 4.256 13 N 0.478 4.522 14 O -0.465 6.465 15 O -0.473 6.473 16 C 0.206 3.794 17 N -0.413 5.413 18 C -0.255 4.255 19 Cl -0.067 7.067 20 H 0.121 0.879 21 H 0.160 0.840 22 H 0.142 0.858 23 H 0.247 0.753 24 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.013 5.704 -1.743 7.791 hybrid contribution 0.227 -0.060 -0.173 0.292 sum 5.240 5.644 -1.916 7.936 Atomic orbital electron populations 1.69075 1.09203 1.32812 1.21283 1.27931 0.94989 1.03301 0.91171 0.85838 0.80892 0.77242 0.80638 1.18063 1.18877 1.17022 1.21627 0.97537 0.89099 1.29029 0.87186 1.17424 0.91145 0.90694 0.88269 1.21085 0.97459 0.96801 1.02763 1.20057 0.98858 0.89724 0.97503 1.19411 1.01843 0.82362 1.22008 1.49818 1.01028 1.03197 0.98194 1.96123 1.05253 1.96065 1.49027 1.95884 1.71170 1.15522 1.64689 1.16726 0.89279 0.86038 0.87375 1.43205 1.11653 1.12395 1.74015 1.19963 0.97779 0.92386 1.15406 1.98203 1.37250 1.98493 1.72706 0.87950 0.84040 0.85814 0.75301 0.77830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -13.33 10.85 55.99 0.61 -12.73 14 2 C 0.06 1.08 5.39 -15.18 -0.08 1.00 14 3 Si 0.93 13.43 29.66 -169.99 -5.04 8.39 14 4 H -0.26 -3.71 7.11 56.52 0.40 -3.31 14 5 H -0.26 -3.69 7.11 56.52 0.40 -3.29 14 6 H -0.25 -3.58 7.11 56.52 0.40 -3.18 14 7 C -0.35 -7.04 8.81 -35.50 -0.31 -7.35 14 8 H 0.11 2.12 7.16 -52.49 -0.38 1.74 14 9 C 0.13 2.85 5.62 -106.78 -0.60 2.25 14 10 C -0.16 -3.46 8.72 -39.05 -0.34 -3.80 14 11 C -0.04 -0.93 9.49 -40.04 -0.38 -1.31 14 12 C -0.15 -3.58 6.92 -79.36 -0.55 -4.13 14 13 N 0.06 1.42 4.98 34.25 0.17 1.59 14 14 O -0.31 -8.17 19.14 -31.57 -0.60 -8.77 14 15 O -0.32 -8.14 16.46 -31.56 -0.52 -8.66 14 16 C 0.32 7.03 6.73 -83.79 -0.56 6.47 14 17 N -0.86 -16.90 8.23 32.41 0.27 -16.64 14 18 C -0.22 -4.75 6.41 -38.33 -0.25 -4.99 14 19 Cl -0.09 -1.76 26.46 -51.86 -1.37 -3.13 14 20 H 0.31 5.00 8.27 -40.82 -0.34 4.66 14 21 H 0.14 2.96 6.02 -52.48 -0.32 2.64 14 22 H 0.12 2.65 7.56 -52.49 -0.40 2.26 14 23 H 0.41 8.18 5.99 -40.82 -0.24 7.94 14 24 H 0.39 6.71 7.93 -40.82 -0.32 6.39 14 LS Contribution 238.13 15.07 3.59 3.59 Total: -1.00 -25.61 238.13 -6.77 -32.38 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.79 Total: 15.85 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -3.07 Total: -11.87 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 1.04 Total: -27.77 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.12 Total: -17.44 kcal Atomic # 14 Polarization: 13.43 SS G_CDS: -5.04 Total: 8.39 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.37 Total: -3.13 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -25.61 -6.77 -32.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716171.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.996 kcal (2) G-P(sol) polarization free energy of solvation -25.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds