Wall clock time and date at job start Mon Mar 30 2020 05:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29496 * 1 3 3 Si 1.86800 * 119.99697 * 2 1 4 4 H 1.48502 * 109.47160 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47328 * 30.00514 * 3 2 1 6 6 H 1.48500 * 109.46993 * 150.00632 * 3 2 1 7 7 C 1.46556 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99870 * 166.42672 * 7 2 1 9 9 C 1.40186 * 120.00009 * 346.42003 * 7 2 1 10 10 C 1.41406 * 120.27695 * 335.53272 * 9 7 2 11 11 C 1.36367 * 119.97411 * 179.97438 * 10 9 7 12 12 C 1.38810 * 120.55393 * 0.02562 * 11 10 9 13 13 N 1.48017 * 119.72229 * 179.97438 * 12 11 10 14 14 O 1.31705 * 119.99747 * 6.47481 * 13 12 11 15 15 O 1.31692 * 120.00264 * 186.46932 * 13 12 11 16 16 C 1.39258 * 120.55909 * 359.97438 * 12 11 10 17 17 N 1.39771 * 119.99516 * 180.02562 * 16 12 11 18 18 C 1.38430 * 120.00691 * 359.97438 * 16 12 11 19 19 Cl 1.73600 * 120.27386 * 179.97438 * 18 16 12 20 20 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.01321 * 359.97438 * 10 9 7 22 22 H 1.07992 * 119.72172 * 180.28001 * 11 10 9 23 23 H 0.97007 * 120.00121 * 26.26331 * 17 16 12 24 24 H 0.96993 * 120.00103 * 206.26203 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2289 1.6178 0.0000 4 1 2.4763 2.0465 -1.4001 5 1 1.4264 2.6527 0.7001 6 1 3.5265 1.4402 0.6999 7 6 2.0278 -1.2692 -0.0006 8 1 3.0851 -1.2821 -0.2201 9 6 1.3563 -2.4664 0.2840 10 6 0.1685 -2.4527 1.0511 11 6 -0.4800 -3.6209 1.3237 12 6 0.0160 -4.8294 0.8545 13 7 -0.7025 -6.0865 1.1619 14 8 -1.8718 -6.0457 1.7666 15 8 -0.1726 -7.2457 0.8306 16 6 1.1838 -4.8692 0.0970 17 7 1.6725 -6.0927 -0.3699 18 6 1.8603 -3.6971 -0.1944 19 17 3.3171 -3.7388 -1.1376 20 1 -0.4850 0.8400 0.0004 21 1 -0.2250 -1.5173 1.4209 22 1 -1.3893 -3.6052 1.9061 23 1 1.0643 -6.8344 -0.5149 24 1 2.6197 -6.2001 -0.5491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716171.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:40 Heat of formation + Delta-G solvation = 0.833453 kcal Electronic energy + Delta-G solvation = -14845.296291 eV Core-core repulsion = 11980.176482 eV Total energy + Delta-G solvation = -2865.119809 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58160 -38.64585 -37.02580 -36.53747 -35.29047 -34.31531 -32.40355 -29.69447 -28.71590 -25.57786 -23.12767 -22.85239 -19.93451 -18.98360 -18.61380 -17.78063 -17.47152 -16.82913 -16.28197 -15.51055 -15.38221 -15.05286 -14.31917 -14.01137 -13.54857 -13.34555 -12.98403 -12.29081 -12.18347 -11.99986 -11.76598 -11.68762 -11.49786 -11.44699 -11.38051 -11.09791 -9.98672 -9.32120 -8.75700 -6.99519 -1.09694 0.65428 0.86307 0.95078 1.37260 1.50472 1.60919 1.70506 2.06834 2.24383 2.93802 3.09760 4.05369 4.35265 4.40659 4.48225 4.74962 4.87712 5.17595 5.37612 5.52561 5.65770 5.93486 6.08166 6.23820 6.40743 6.58567 6.92603 7.56792 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.008580 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.286113 B = 3262.476641 C = 4145.354857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.024 3.976 3 Si 1.005 2.995 4 H -0.252 1.252 5 H -0.254 1.254 6 H -0.244 1.244 7 C -0.301 4.301 8 H 0.128 0.872 9 C 0.082 3.918 10 C -0.132 4.132 11 C -0.071 4.071 12 C -0.142 4.142 13 N 0.054 4.946 14 O -0.391 6.391 15 O -0.365 6.365 16 C 0.299 3.701 17 N -0.851 5.851 18 C -0.219 4.219 19 Cl -0.068 7.068 20 H 0.327 0.673 21 H 0.151 0.849 22 H 0.122 0.878 23 H 0.407 0.593 24 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.628 9.692 -2.763 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.176 1.176 5 H -0.178 1.178 6 H -0.167 1.167 7 C -0.325 4.325 8 H 0.145 0.855 9 C 0.076 3.924 10 C -0.154 4.154 11 C -0.091 4.091 12 C -0.256 4.256 13 N 0.451 4.549 14 O -0.526 6.526 15 O -0.502 6.502 16 C 0.187 3.813 17 N -0.401 5.401 18 C -0.255 4.255 19 Cl -0.040 7.040 20 H 0.142 0.858 21 H 0.168 0.832 22 H 0.140 0.860 23 H 0.245 0.755 24 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.392 9.724 -2.811 12.534 hybrid contribution -0.185 -0.640 -0.044 0.667 sum 7.206 9.084 -2.856 11.942 Atomic orbital electron populations 1.69028 1.10536 1.35337 1.18143 1.28856 0.95688 1.05599 0.90724 0.84799 0.79563 0.72738 0.80841 1.17597 1.17788 1.16658 1.22350 0.98265 0.89532 1.22373 0.85475 1.17703 0.92214 0.91668 0.90819 1.21240 0.96528 0.96513 1.01118 1.20102 0.99776 0.89885 0.99355 1.19863 1.01895 0.82283 1.21513 1.49821 1.01339 1.03434 1.00279 1.96065 1.07076 1.96199 1.53304 1.95809 1.71543 1.16258 1.66614 1.16833 0.89325 0.87143 0.88026 1.43130 1.12236 1.11640 1.73098 1.20038 0.98495 0.91859 1.15144 1.98204 1.35418 1.98452 1.71885 0.85844 0.83167 0.85976 0.75533 0.76444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -23.84 10.85 23.22 0.25 -23.59 14 2 C 0.02 0.76 5.39 87.21 0.47 1.23 14 3 Si 1.00 22.41 29.66 68.60 2.03 24.44 14 4 H -0.25 -5.58 7.11 99.48 0.71 -4.87 14 5 H -0.25 -5.36 7.11 99.48 0.71 -4.65 14 6 H -0.24 -5.39 7.11 99.48 0.71 -4.68 14 7 C -0.30 -10.80 8.81 24.91 0.22 -10.58 14 8 H 0.13 4.18 7.16 -2.91 -0.02 4.15 14 9 C 0.08 3.36 5.62 -21.26 -0.12 3.24 14 10 C -0.13 -5.55 8.72 22.61 0.20 -5.35 14 11 C -0.07 -3.27 9.49 21.97 0.21 -3.06 14 12 C -0.14 -7.05 6.92 36.76 0.25 -6.80 14 13 N 0.05 2.98 4.98 -45.55 -0.23 2.75 14 14 O -0.39 -22.82 19.14 3.51 0.07 -22.75 14 15 O -0.36 -19.74 16.46 3.53 0.06 -19.68 14 16 C 0.30 13.28 6.73 38.17 0.26 13.54 14 17 N -0.85 -33.58 8.23 -51.39 -0.42 -34.00 14 18 C -0.22 -9.03 6.41 23.08 0.15 -8.88 14 19 Cl -0.07 -2.32 26.46 -2.72 -0.07 -2.39 14 20 H 0.33 9.10 8.27 -92.71 -0.77 8.33 14 21 H 0.15 5.94 6.02 -2.91 -0.02 5.92 14 22 H 0.12 5.54 7.56 -2.91 -0.02 5.51 14 23 H 0.41 16.85 5.99 -92.70 -0.56 16.30 14 24 H 0.40 13.54 7.93 -92.71 -0.73 12.81 14 Total: -1.00 -56.40 238.13 3.33 -53.07 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.00 Total: 38.82 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 1.64 Total: -16.67 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.40 Total: -54.84 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: 0.13 Total: -42.43 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: 2.03 Total: 24.44 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.39 kcal Total: -56.40 3.33 -53.07 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716171.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.902 kcal (2) G-P(sol) polarization free energy of solvation -56.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds