Wall clock time and date at job start Mon Mar 30 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29499 * 1 3 3 Si 1.86805 * 120.00108 * 2 1 4 4 H 1.48498 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47119 * 300.00545 * 3 2 1 6 6 H 1.48507 * 109.46711 * 60.00409 * 3 2 1 7 7 C 1.46549 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99879 * 159.74947 * 7 2 1 9 9 C 1.40171 * 120.00078 * 339.73892 * 7 2 1 10 10 C 1.41565 * 120.27179 * 315.74588 * 9 7 2 11 11 Cl 1.73597 * 120.11002 * 359.96047 * 10 9 7 12 12 C 1.37751 * 119.78491 * 179.97438 * 10 9 7 13 13 C 1.38510 * 120.34381 * 0.02562 * 12 10 9 14 14 C 1.39607 * 120.56085 * 359.97438 * 13 12 10 15 15 N 1.39702 * 119.89631 * 179.72370 * 14 13 12 16 16 C 1.37989 * 120.20400 * 0.02562 * 14 13 12 17 17 N 1.48020 * 120.17422 * 179.97438 * 16 14 13 18 18 O 1.31695 * 120.00273 * 90.00032 * 17 16 14 19 19 O 1.31697 * 119.99784 * 269.99601 * 17 16 14 20 20 H 0.97002 * 119.99936 * 3.01621 * 1 2 3 21 21 H 1.07992 * 119.83390 * 179.97438 * 12 10 9 22 22 H 1.08004 * 119.72016 * 179.97438 * 13 12 10 23 23 H 0.97004 * 120.00090 * 0.02562 * 15 14 13 24 24 H 0.96999 * 119.99588 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6178 0.0000 4 1 3.6890 1.3463 -0.0006 5 1 1.8702 2.3965 -1.2124 6 1 1.8703 2.3964 1.2126 7 6 2.0277 -1.2692 -0.0006 8 1 3.0577 -1.2979 -0.3243 9 6 1.3919 -2.4457 0.4193 10 6 0.5891 -2.4460 1.5853 11 17 0.3878 -0.9871 2.5044 12 6 -0.0315 -3.6078 1.9885 13 6 0.1264 -4.7748 1.2594 14 6 0.9147 -4.7909 0.1073 15 7 1.0691 -5.9771 -0.6144 16 6 1.5469 -3.6402 -0.3174 17 7 2.3830 -3.6580 -1.5387 18 8 1.8424 -3.3967 -2.7107 19 8 3.6676 -3.9353 -1.4532 20 1 -0.4850 0.8389 -0.0442 21 1 -0.6437 -3.6090 2.8781 22 1 -0.3646 -5.6801 1.5849 23 1 0.6285 -6.7878 -0.3149 24 1 1.6161 -5.9898 -1.4152 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716224.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:39 Heat of formation + Delta-G solvation = 29.654126 kcal Electronic energy + Delta-G solvation = -15198.170031 eV Core-core repulsion = 12334.299980 eV Total energy + Delta-G solvation = -2863.870051 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.93527 -37.08084 -35.43691 -34.26923 -33.31532 -33.16861 -30.81984 -28.30753 -25.93254 -24.69506 -21.42007 -20.90095 -18.11202 -17.37069 -17.16557 -16.61384 -15.73462 -15.17505 -14.54560 -14.27694 -13.41393 -13.16177 -12.79664 -12.11647 -11.77685 -11.51726 -11.29934 -11.09019 -10.88279 -10.44713 -10.41296 -10.20449 -9.83555 -9.72941 -9.42744 -8.85028 -8.19022 -7.29351 -6.89827 -4.96226 0.85346 2.09424 2.40764 2.43222 2.90130 2.91731 2.97303 3.60205 3.68377 4.12429 4.22152 4.75234 5.68637 5.87209 6.16509 6.34018 6.55408 6.63921 6.87851 7.03687 7.20157 7.29774 7.74003 7.74867 7.92981 8.04523 8.08495 8.24452 9.65386 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.012420 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.539674 B = 2253.930962 C = 3164.759311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.091 3.909 3 Si 0.913 3.087 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.095 0.905 9 C 0.180 3.820 10 C -0.117 4.117 11 Cl -0.085 7.085 12 C -0.021 4.021 13 C -0.301 4.301 14 C 0.294 3.706 15 N -0.883 5.883 16 C -0.176 4.176 17 N 0.017 4.983 18 O -0.169 6.169 19 O -0.193 6.193 20 H 0.297 0.703 21 H 0.115 0.885 22 H 0.117 0.883 23 H 0.398 0.602 24 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -2.496 2.965 4.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.487 4.487 8 H 0.113 0.887 9 C 0.175 3.825 10 C -0.147 4.147 11 Cl -0.056 7.056 12 C -0.040 4.040 13 C -0.325 4.325 14 C 0.188 3.812 15 N -0.423 5.423 16 C -0.264 4.264 17 N 0.510 4.490 18 O -0.376 6.376 19 O -0.393 6.393 20 H 0.109 0.891 21 H 0.133 0.867 22 H 0.135 0.865 23 H 0.227 0.773 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.059 -2.181 3.743 4.796 hybrid contribution 0.476 0.496 -0.559 0.886 sum -1.583 -1.684 3.184 3.935 Atomic orbital electron populations 1.69092 1.08926 1.31596 1.24040 1.27193 0.94424 1.01385 0.91020 0.86122 0.81753 0.79386 0.79205 1.17418 1.19164 1.18802 1.20710 0.99190 0.90299 1.38508 0.88724 1.16378 0.88812 0.89245 0.88112 1.20456 1.10968 0.86638 0.96598 1.98215 1.96433 1.38692 1.72285 1.20430 0.95055 0.90957 0.97600 1.19638 1.13791 0.99016 1.00100 1.16966 0.90804 0.83103 0.90345 1.42478 1.58719 1.09653 1.31425 1.19463 1.16273 0.98465 0.92170 1.50176 1.01951 0.92898 1.03942 1.96171 1.76085 1.51778 1.13572 1.96162 0.94894 1.53005 1.95280 0.89082 0.86740 0.86516 0.77343 0.78167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.13 11.23 55.99 0.63 -16.50 14 2 C 0.09 2.17 3.92 -15.19 -0.06 2.11 14 3 Si 0.91 18.07 29.68 -169.99 -5.05 13.02 14 4 H -0.25 -5.02 7.11 56.52 0.40 -4.62 14 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 14 7 C -0.46 -11.97 8.41 -35.51 -0.30 -12.26 14 8 H 0.09 2.52 8.00 -52.48 -0.42 2.10 14 9 C 0.18 4.59 5.33 -106.78 -0.57 4.02 14 10 C -0.12 -2.74 6.00 -38.49 -0.23 -2.97 14 11 Cl -0.08 -1.85 24.88 -51.86 -1.29 -3.14 14 12 C -0.02 -0.42 9.80 -39.66 -0.39 -0.81 14 13 C -0.30 -5.89 9.90 -38.97 -0.39 -6.28 14 14 C 0.29 6.23 6.74 -83.85 -0.57 5.66 14 15 N -0.88 -15.18 9.08 32.38 0.29 -14.89 14 16 C -0.18 -4.34 6.32 -78.92 -0.50 -4.84 14 17 N 0.02 0.42 3.40 34.46 0.12 0.54 14 18 O -0.17 -4.28 19.97 -31.57 -0.63 -4.91 14 19 O -0.19 -4.78 19.97 -31.57 -0.63 -5.41 14 20 H 0.30 6.31 8.27 -40.82 -0.34 5.97 14 21 H 0.11 2.01 8.06 -52.49 -0.42 1.58 14 22 H 0.12 1.89 8.06 -52.48 -0.42 1.47 14 23 H 0.40 5.35 8.84 -40.82 -0.36 4.99 14 24 H 0.39 6.83 8.05 -40.82 -0.33 6.50 14 LS Contribution 245.23 15.07 3.70 3.70 Total: -1.00 -27.35 245.23 -6.95 -34.30 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -1.09 Total: 8.65 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.00 Total: -15.36 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 1.04 Total: -30.85 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.26 Total: -10.31 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.05 Total: 13.02 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -1.29 Total: -3.14 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.35 -6.95 -34.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716224.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.953 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds