Wall clock time and date at job start Mon Mar 30 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29499 * 1 3 3 Si 1.86805 * 120.00108 * 2 1 4 4 H 1.48498 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47119 * 300.00545 * 3 2 1 6 6 H 1.48507 * 109.46711 * 60.00409 * 3 2 1 7 7 C 1.46549 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99879 * 159.74947 * 7 2 1 9 9 C 1.40171 * 120.00078 * 339.73892 * 7 2 1 10 10 C 1.41565 * 120.27179 * 315.74588 * 9 7 2 11 11 Cl 1.73597 * 120.11002 * 359.96047 * 10 9 7 12 12 C 1.37751 * 119.78491 * 179.97438 * 10 9 7 13 13 C 1.38510 * 120.34381 * 0.02562 * 12 10 9 14 14 C 1.39607 * 120.56085 * 359.97438 * 13 12 10 15 15 N 1.39702 * 119.89631 * 179.72370 * 14 13 12 16 16 C 1.37989 * 120.20400 * 0.02562 * 14 13 12 17 17 N 1.48020 * 120.17422 * 179.97438 * 16 14 13 18 18 O 1.31695 * 120.00273 * 90.00032 * 17 16 14 19 19 O 1.31697 * 119.99784 * 269.99601 * 17 16 14 20 20 H 0.97002 * 119.99936 * 3.01621 * 1 2 3 21 21 H 1.07992 * 119.83390 * 179.97438 * 12 10 9 22 22 H 1.08004 * 119.72016 * 179.97438 * 13 12 10 23 23 H 0.97004 * 120.00090 * 0.02562 * 15 14 13 24 24 H 0.96999 * 119.99588 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6178 0.0000 4 1 3.6890 1.3463 -0.0006 5 1 1.8702 2.3965 -1.2124 6 1 1.8703 2.3964 1.2126 7 6 2.0277 -1.2692 -0.0006 8 1 3.0577 -1.2979 -0.3243 9 6 1.3919 -2.4457 0.4193 10 6 0.5891 -2.4460 1.5853 11 17 0.3878 -0.9871 2.5044 12 6 -0.0315 -3.6078 1.9885 13 6 0.1264 -4.7748 1.2594 14 6 0.9147 -4.7909 0.1073 15 7 1.0691 -5.9771 -0.6144 16 6 1.5469 -3.6402 -0.3174 17 7 2.3830 -3.6580 -1.5387 18 8 1.8424 -3.3967 -2.7107 19 8 3.6676 -3.9353 -1.4532 20 1 -0.4850 0.8389 -0.0442 21 1 -0.6437 -3.6090 2.8781 22 1 -0.3646 -5.6801 1.5849 23 1 0.6285 -6.7878 -0.3149 24 1 1.6161 -5.9898 -1.4152 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716224.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:39 Heat of formation + Delta-G solvation = 13.027706 kcal Electronic energy + Delta-G solvation = -15198.891006 eV Core-core repulsion = 12334.299980 eV Total energy + Delta-G solvation = -2864.591026 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71014 -38.93475 -37.10119 -35.97523 -35.29456 -34.80335 -32.57058 -30.02930 -27.67361 -26.52474 -23.12990 -22.66004 -19.85480 -19.17936 -19.10932 -18.24872 -17.42335 -16.78957 -16.30390 -15.93194 -15.16921 -14.78967 -14.50230 -13.77685 -13.45616 -13.14128 -12.95141 -12.72165 -12.62674 -12.42831 -12.10096 -11.97942 -11.73434 -11.56536 -11.08547 -10.50373 -9.94297 -9.01940 -8.53496 -6.79652 -1.11824 0.35963 0.53494 0.72837 1.29255 1.33571 1.41794 1.90367 2.08044 2.41177 2.74068 2.99625 4.07224 4.23006 4.50098 4.64447 4.84943 4.91373 5.16614 5.32242 5.56859 5.62221 5.76837 5.99842 6.18051 6.33027 6.45466 6.75196 7.96062 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.012420 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.539674 B = 2253.930962 C = 3164.759311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.067 3.933 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.255 1.255 6 H -0.248 1.248 7 C -0.507 4.507 8 H 0.069 0.931 9 C 0.159 3.841 10 C -0.145 4.145 11 Cl -0.080 7.080 12 C -0.013 4.013 13 C -0.284 4.284 14 C 0.289 3.711 15 N -0.866 5.866 16 C -0.211 4.211 17 N 0.023 4.977 18 O -0.192 6.192 19 O -0.193 6.193 20 H 0.307 0.693 21 H 0.149 0.851 22 H 0.162 0.838 23 H 0.419 0.581 24 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -3.394 4.063 5.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.180 1.180 6 H -0.172 1.172 7 C -0.532 4.532 8 H 0.087 0.913 9 C 0.154 3.846 10 C -0.174 4.174 11 Cl -0.051 7.051 12 C -0.033 4.033 13 C -0.307 4.307 14 C 0.181 3.819 15 N -0.406 5.406 16 C -0.298 4.298 17 N 0.515 4.485 18 O -0.395 6.395 19 O -0.396 6.396 20 H 0.120 0.880 21 H 0.167 0.833 22 H 0.179 0.821 23 H 0.251 0.749 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.145 -3.117 4.810 6.538 hybrid contribution 0.767 0.564 -0.851 1.277 sum -2.378 -2.553 3.959 5.277 Atomic orbital electron populations 1.69066 1.09685 1.32870 1.24681 1.27715 0.95028 1.03126 0.90325 0.85400 0.79909 0.76224 0.80151 1.18529 1.17951 1.17205 1.20659 0.98665 0.92184 1.41692 0.91338 1.16735 0.89575 0.89454 0.88798 1.20664 1.12094 0.88021 0.96636 1.98197 1.96396 1.38731 1.71803 1.20889 0.93989 0.90041 0.98349 1.20210 1.11829 1.00296 0.98404 1.17236 0.90295 0.83291 0.91080 1.42414 1.58159 1.09312 1.30739 1.19966 1.17579 0.99973 0.92298 1.50346 1.01873 0.92126 1.04171 1.96156 1.76119 1.52985 1.14265 1.96135 0.95381 1.52796 1.95286 0.88023 0.83329 0.82053 0.74865 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.54 11.23 23.21 0.26 -35.28 14 2 C 0.07 3.22 3.92 87.21 0.34 3.56 14 3 Si 0.96 37.13 29.68 68.60 2.04 39.17 14 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 14 5 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 6 H -0.25 -8.88 7.11 99.48 0.71 -8.17 14 7 C -0.51 -27.03 8.41 24.91 0.21 -26.82 14 8 H 0.07 3.86 8.00 -2.91 -0.02 3.84 14 9 C 0.16 8.21 5.33 -21.26 -0.11 8.09 14 10 C -0.14 -6.61 6.00 22.98 0.14 -6.47 14 11 Cl -0.08 -3.42 24.88 -2.72 -0.07 -3.48 14 12 C -0.01 -0.50 9.80 22.22 0.22 -0.28 14 13 C -0.28 -9.96 9.90 22.67 0.22 -9.73 14 14 C 0.29 11.61 6.74 38.16 0.26 11.87 14 15 N -0.87 -27.40 9.08 -51.48 -0.47 -27.87 14 16 C -0.21 -10.35 6.32 37.04 0.23 -10.11 14 17 N 0.02 1.15 3.40 -44.88 -0.15 1.00 14 18 O -0.19 -9.94 19.97 3.52 0.07 -9.87 14 19 O -0.19 -9.66 19.97 3.52 0.07 -9.59 14 20 H 0.31 12.97 8.27 -92.71 -0.77 12.21 14 21 H 0.15 4.56 8.06 -2.91 -0.02 4.53 14 22 H 0.16 4.23 8.06 -2.91 -0.02 4.20 14 23 H 0.42 9.61 8.84 -92.71 -0.82 8.79 14 24 H 0.39 12.93 8.05 -92.71 -0.75 12.19 14 Total: -1.00 -59.47 245.23 2.98 -56.49 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.28 Total: 19.34 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 1.51 Total: -29.90 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.36 Total: -62.15 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.14 Total: -19.46 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.04 Total: 39.17 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.07 Total: -3.48 kcal Total: -59.47 2.98 -56.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716224.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.517 kcal (2) G-P(sol) polarization free energy of solvation -59.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds