Wall clock time and date at job start Mon Mar 30 2020 05:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29502 * 1 3 3 Si 1.86808 * 119.99657 * 2 1 4 4 H 1.48504 * 109.46864 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46907 * 120.00428 * 3 2 1 6 6 H 1.48501 * 109.46894 * 240.00588 * 3 2 1 7 7 C 1.46546 * 120.00436 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00113 * 155.30802 * 7 2 1 9 9 C 1.40175 * 119.99792 * 335.30969 * 7 2 1 10 10 C 1.41211 * 120.27087 * 334.85351 * 9 7 2 11 11 C 1.37949 * 119.64734 * 179.72623 * 10 9 7 12 12 N 1.39711 * 119.89988 * 180.31476 * 11 10 9 13 13 C 1.39642 * 120.20392 * 0.57644 * 11 10 9 14 14 C 1.38462 * 120.56272 * 359.69525 * 13 11 10 15 15 N 1.48011 * 119.83029 * 180.02562 * 14 13 11 16 16 O 1.31701 * 119.99764 * 359.97438 * 15 14 13 17 17 O 1.31691 * 120.00264 * 179.97438 * 15 14 13 18 18 C 1.37796 * 120.34366 * 359.97438 * 14 13 11 19 19 Cl 1.73595 * 120.10541 * 180.02562 * 18 14 13 20 20 H 0.97005 * 119.99907 * 174.21665 * 1 2 3 21 21 H 1.08003 * 120.17947 * 359.97438 * 10 9 7 22 22 H 0.96995 * 120.00596 * 180.25747 * 12 11 10 23 23 H 0.97003 * 119.99677 * 0.25917 * 12 11 10 24 24 H 1.08010 * 119.71825 * 179.71690 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6179 0.0000 4 1 1.2638 2.7465 0.0006 5 1 3.0828 1.6965 1.2124 6 1 3.0826 1.6966 -1.2126 7 6 2.0278 -1.2691 -0.0006 8 1 3.0338 -1.3116 -0.3913 9 6 1.4231 -2.4278 0.5060 10 6 0.3911 -2.3311 1.4650 11 6 -0.1989 -3.4795 1.9506 12 7 -1.2249 -3.3897 2.8946 13 6 0.2299 -4.7318 1.5057 14 6 1.2449 -4.8368 0.5699 15 7 1.6863 -6.1724 0.1092 16 8 1.1141 -7.2569 0.5897 17 8 2.6511 -6.2762 -0.7811 18 6 1.8457 -3.7044 0.0644 19 17 3.1173 -3.8433 -1.1091 20 1 -0.4850 -0.8358 -0.0847 21 1 0.0627 -1.3630 1.8134 22 1 -1.6383 -4.1964 3.2399 23 1 -1.5239 -2.5206 3.2047 24 1 -0.2345 -5.6260 1.8946 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716329.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:42 Heat of formation + Delta-G solvation = 9.978809 kcal Electronic energy + Delta-G solvation = -14889.390407 eV Core-core repulsion = 12024.667170 eV Total energy + Delta-G solvation = -2864.723237 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78353 -39.32692 -37.31640 -36.34208 -35.43850 -34.90280 -32.22929 -29.74682 -27.39545 -27.20944 -23.15039 -22.78277 -20.53489 -19.22263 -18.83023 -17.67540 -17.35032 -17.05751 -16.45399 -15.82144 -15.54661 -14.97324 -14.48445 -13.92567 -13.13501 -13.11060 -12.92913 -12.90073 -12.65178 -12.33639 -12.06521 -11.83591 -11.81175 -11.27436 -11.12871 -10.89332 -10.20487 -9.54492 -8.54888 -6.76862 -1.63312 0.20078 0.52831 0.63373 1.46277 1.53873 1.59104 1.83706 2.22084 2.36165 2.97945 3.07361 3.90641 4.18899 4.28922 4.32969 4.82657 4.85699 5.16967 5.25573 5.32538 5.63774 5.71157 5.81527 6.25342 6.41789 6.57732 7.03983 7.67659 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.009806 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.972653 B = 2854.638726 C = 3844.993298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.015 3.985 3 Si 1.120 2.880 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.275 4.275 11 C 0.266 3.734 12 N -0.859 5.859 13 C -0.276 4.276 14 C 0.077 3.923 15 N -0.012 5.012 16 O -0.213 6.213 17 O -0.186 6.186 18 C -0.151 4.151 19 Cl -0.055 7.055 20 H 0.298 0.702 21 H 0.124 0.876 22 H 0.407 0.593 23 H 0.408 0.592 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 3.124 3.728 5.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.212 4.212 3 Si 0.935 3.065 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.516 4.516 8 H 0.112 0.888 9 C 0.093 3.907 10 C -0.301 4.301 11 C 0.159 3.841 12 N -0.400 5.400 13 C -0.300 4.300 14 C -0.010 4.010 15 N 0.461 4.539 16 O -0.400 6.400 17 O -0.379 6.379 18 C -0.182 4.182 19 Cl -0.026 7.026 20 H 0.112 0.888 21 H 0.142 0.858 22 H 0.237 0.763 23 H 0.238 0.762 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.746 5.206 3.865 6.715 hybrid contribution 0.074 -2.579 -0.196 2.588 sum -1.671 2.627 3.669 4.812 Atomic orbital electron populations 1.70081 1.09270 1.34708 1.22958 1.30114 0.95273 1.06846 0.88957 0.82970 0.74998 0.68797 0.79774 1.18870 1.18086 1.18128 1.22249 1.02766 0.93237 1.33364 0.88809 1.17200 0.92168 0.89696 0.91683 1.20774 1.06775 0.96977 1.05584 1.17063 0.87777 0.91115 0.88171 1.42229 1.39288 1.11803 1.46691 1.19681 1.04872 0.98086 1.07389 1.19850 1.01795 0.76714 1.02674 1.50794 0.99328 1.05025 0.98766 1.96139 1.57906 1.25350 1.60598 1.96251 1.20270 1.95997 1.25373 1.20862 1.01609 0.92763 1.02920 1.98273 1.49647 1.97934 1.56725 0.88773 0.85778 0.76319 0.76222 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -32.63 12.31 23.21 0.29 -32.35 14 2 C 0.01 0.61 5.12 87.20 0.45 1.06 14 3 Si 1.12 34.87 30.08 68.60 2.06 36.93 14 4 H -0.26 -8.01 7.11 99.48 0.71 -7.31 14 5 H -0.26 -7.56 7.11 99.48 0.71 -6.85 14 6 H -0.26 -7.59 7.11 99.48 0.71 -6.88 14 7 C -0.49 -22.50 8.74 24.91 0.22 -22.28 14 8 H 0.09 4.29 7.22 -2.91 -0.02 4.27 14 9 C 0.10 4.58 5.37 -21.27 -0.11 4.47 14 10 C -0.28 -11.68 7.83 22.93 0.18 -11.50 14 11 C 0.27 10.06 6.74 38.16 0.26 10.32 14 12 N -0.86 -23.32 9.09 -51.48 -0.47 -23.78 14 13 C -0.28 -11.33 9.44 22.66 0.21 -11.11 14 14 C 0.08 3.59 6.87 36.33 0.25 3.84 14 15 N -0.01 -0.55 4.98 -46.59 -0.23 -0.78 14 16 O -0.21 -9.74 19.13 3.51 0.07 -9.67 14 17 O -0.19 -8.91 16.56 3.53 0.06 -8.85 14 18 C -0.15 -7.20 6.39 22.98 0.15 -7.05 14 19 Cl -0.05 -2.48 24.39 -2.72 -0.07 -2.54 14 20 H 0.30 13.48 6.70 -92.70 -0.62 12.86 14 21 H 0.12 5.17 6.45 -2.91 -0.02 5.16 14 22 H 0.41 8.92 8.84 -92.71 -0.82 8.10 14 23 H 0.41 9.55 8.83 -92.71 -0.82 8.73 14 24 H 0.14 5.28 7.55 -2.91 -0.02 5.26 14 Total: -1.00 -53.07 239.97 3.11 -49.97 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.20 Total: 23.34 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 1.60 Total: -32.26 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.41 Total: -56.91 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.13 Total: -18.53 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.06 Total: 36.93 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -0.07 Total: -2.54 kcal Total: -53.07 3.11 -49.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716329.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.948 kcal (2) G-P(sol) polarization free energy of solvation -53.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds