Wall clock time and date at job start Mon Mar 30 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29468 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46896 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47224 * 300.00248 * 3 2 1 6 6 H 1.48507 * 109.47013 * 60.00451 * 3 2 1 7 7 C 1.46653 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99491 * 191.66958 * 7 2 1 9 9 C 1.39407 * 120.00186 * 11.67098 * 7 2 1 10 10 C 1.41665 * 120.65708 * 25.86895 * 9 7 2 11 11 C 1.35918 * 119.83947 * 180.02562 * 10 9 7 12 12 Cl 1.73601 * 119.33933 * 179.97438 * 11 10 9 13 13 C 1.39398 * 121.32314 * 0.27055 * 11 10 9 14 14 N 1.48020 * 119.30885 * 179.70023 * 13 11 10 15 15 O 1.31699 * 120.00622 * 179.97438 * 14 13 11 16 16 O 1.31702 * 119.99359 * 0.02562 * 14 13 11 17 17 C 1.37688 * 121.39276 * 359.43575 * 13 11 10 18 18 C 1.39240 * 120.02574 * 0.56004 * 17 13 11 19 19 N 1.37547 * 120.63383 * 179.74779 * 18 17 13 20 20 H 0.96993 * 119.99636 * 359.97438 * 1 2 3 21 21 H 1.07994 * 120.08141 * 0.04190 * 10 9 7 22 22 H 1.08006 * 119.98731 * 180.30669 * 17 13 11 23 23 H 0.96998 * 120.00065 * 179.97438 * 19 18 17 24 24 H 0.97004 * 120.00142 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2287 1.6178 0.0000 4 1 3.6887 1.3464 -0.0006 5 1 1.8699 2.3965 -1.2124 6 1 1.8700 2.3964 1.2126 7 6 2.0279 -1.2701 -0.0006 8 1 3.0912 -1.2797 0.1886 9 6 1.3525 -2.4648 -0.2453 10 6 0.1559 -2.4759 -1.0035 11 6 -0.4893 -3.6502 -1.2316 12 17 -1.9551 -3.6486 -2.1619 13 6 -0.0010 -4.8550 -0.7285 14 7 -0.7433 -6.1069 -0.9984 15 8 -0.2940 -7.2529 -0.5301 16 8 -1.8524 -6.0748 -1.7078 17 6 1.1601 -4.9059 0.0098 18 6 1.8670 -3.7367 0.2780 19 7 3.0256 -3.7724 1.0186 20 1 -0.4849 0.8400 0.0004 21 1 -0.2426 -1.5535 -1.3995 22 1 1.5204 -5.8526 0.3845 23 1 3.5110 -2.9524 1.1996 24 1 3.3572 -4.6177 1.3599 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716661.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:20 Heat of formation + Delta-G solvation = 5.561404 kcal Electronic energy + Delta-G solvation = -14811.788727 eV Core-core repulsion = 11946.873938 eV Total energy + Delta-G solvation = -2864.914790 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25805 -38.42953 -37.33323 -36.31001 -35.00094 -34.25191 -32.45598 -29.78976 -28.49988 -25.52745 -23.34162 -22.35350 -20.00793 -18.99403 -18.47055 -17.59728 -17.25312 -16.68933 -16.06321 -15.71991 -15.19214 -14.71841 -14.31645 -14.30405 -13.59101 -13.16195 -12.98443 -12.80073 -12.34452 -12.31103 -11.92986 -11.55671 -11.30015 -11.12893 -10.99861 -10.44926 -10.16487 -9.46663 -8.68685 -6.73400 -1.09025 0.70237 0.89944 1.22193 1.34583 1.50321 1.60744 1.65509 2.02997 2.20760 2.98350 3.17955 3.85677 4.18477 4.36450 4.59441 4.76225 5.00224 5.15194 5.30261 5.43463 5.73106 5.74974 5.84608 6.14142 6.76041 6.93633 7.19898 7.41463 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.030439 B = 0.008508 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.651589 B = 3290.394582 C = 4142.305327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.010 3.990 3 Si 1.015 2.985 4 H -0.228 1.228 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.242 4.242 8 H 0.157 0.843 9 C 0.031 3.969 10 C -0.146 4.146 11 C 0.015 3.985 12 Cl -0.069 7.069 13 C -0.084 4.084 14 N 0.038 4.962 15 O -0.447 6.447 16 O -0.395 6.395 17 C -0.201 4.201 18 C 0.179 3.821 19 N -0.839 5.839 20 H 0.332 0.668 21 H 0.154 0.846 22 H 0.116 0.884 23 H 0.412 0.588 24 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.561 15.668 3.408 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.224 4.224 3 Si 0.831 3.169 4 H -0.149 1.149 5 H -0.185 1.185 6 H -0.181 1.181 7 C -0.266 4.266 8 H 0.174 0.826 9 C 0.025 3.975 10 C -0.170 4.170 11 C -0.014 4.014 12 Cl -0.040 7.040 13 C -0.199 4.199 14 N 0.418 4.582 15 O -0.567 6.567 16 O -0.525 6.525 17 C -0.230 4.230 18 C 0.068 3.932 19 N -0.382 5.382 20 H 0.147 0.853 21 H 0.172 0.828 22 H 0.134 0.866 23 H 0.243 0.757 24 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 10.060 15.586 3.293 18.841 hybrid contribution -0.624 -0.582 -0.099 0.859 sum 9.436 15.004 3.194 18.010 Atomic orbital electron populations 1.69030 1.11048 1.36057 1.15402 1.29128 0.95819 1.06041 0.91389 0.84579 0.80366 0.72100 0.79899 1.14939 1.18488 1.18137 1.22625 0.98715 0.88884 1.16335 0.82595 1.18890 0.93127 0.91847 0.93649 1.20960 0.97826 0.94786 1.03433 1.20256 0.90210 0.93389 0.97561 1.98323 1.34992 1.98852 1.71795 1.19307 1.00729 0.80420 1.19404 1.49708 1.02460 1.03341 1.02718 1.95946 1.76894 1.17912 1.65978 1.96037 1.14182 1.95772 1.46543 1.19229 0.97088 0.97883 1.08802 1.18539 0.89558 0.90825 0.94281 1.41498 1.24495 1.13117 1.59040 0.85274 0.82848 0.86610 0.75668 0.76424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -20.97 10.85 23.24 0.25 -20.72 14 2 C 0.01 0.26 5.43 87.24 0.47 0.74 14 3 Si 1.02 16.89 29.66 68.60 2.03 18.93 14 4 H -0.23 -3.25 7.11 99.48 0.71 -2.54 14 5 H -0.26 -4.66 7.11 99.48 0.71 -3.95 14 6 H -0.26 -4.37 7.11 99.48 0.71 -3.67 14 7 C -0.24 -6.69 8.84 24.75 0.22 -6.47 14 8 H 0.16 3.05 6.91 -2.91 -0.02 3.03 14 9 C 0.03 1.15 5.77 -19.90 -0.11 1.03 14 10 C -0.15 -6.16 8.44 22.58 0.19 -5.97 14 11 C 0.01 0.74 6.26 22.01 0.14 0.88 14 12 Cl -0.07 -3.33 25.57 -2.72 -0.07 -3.40 14 13 C -0.08 -4.56 6.89 36.52 0.25 -4.30 14 14 N 0.04 2.38 4.98 -46.10 -0.23 2.15 14 15 O -0.45 -29.53 19.07 3.52 0.07 -29.46 14 16 O -0.40 -25.61 16.43 3.51 0.06 -25.55 14 17 C -0.20 -9.40 9.40 22.38 0.21 -9.19 14 18 C 0.18 6.58 6.97 40.74 0.28 6.86 14 19 N -0.84 -21.13 8.95 -47.19 -0.42 -21.55 14 20 H 0.33 8.25 8.27 -92.71 -0.77 7.49 14 21 H 0.15 6.13 6.10 -2.91 -0.02 6.11 14 22 H 0.12 5.49 7.51 -2.91 -0.02 5.47 14 23 H 0.41 7.62 7.27 -92.71 -0.67 6.94 14 24 H 0.41 8.94 8.83 -92.71 -0.82 8.12 14 Total: -1.00 -72.18 239.70 3.14 -69.04 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.20 Total: 27.01 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 1.65 Total: -16.43 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.40 Total: -40.12 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: 0.12 Total: -55.02 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: 2.03 Total: 18.93 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.07 Total: -3.40 kcal Total: -72.18 3.14 -69.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716661.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.603 kcal (2) G-P(sol) polarization free energy of solvation -72.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds