Wall clock time and date at job start Mon Mar 30 2020 05:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29519 * 1 3 3 Si 1.86798 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47080 * 274.23126 * 3 2 1 5 5 H 1.48495 * 109.47299 * 34.23650 * 3 2 1 6 6 H 1.48498 * 109.47123 * 154.23620 * 3 2 1 7 7 C 1.46516 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99898 * 341.22965 * 7 2 1 9 9 C 1.40358 * 120.00330 * 161.23871 * 7 2 1 10 10 C 1.41157 * 120.24254 * 334.50961 * 9 7 2 11 11 C 1.38098 * 119.65894 * 180.02562 * 10 9 7 12 12 N 1.39672 * 119.92721 * 180.02562 * 11 10 9 13 13 C 1.39496 * 120.15537 * 0.03089 * 11 10 9 14 14 C 1.38759 * 120.50402 * 359.67131 * 13 11 10 15 15 Cl 1.73594 * 119.82947 * 180.32554 * 14 13 11 16 16 C 1.37636 * 120.34258 * 0.60721 * 14 13 11 17 17 N 1.48019 * 120.08609 * 179.69237 * 16 14 13 18 18 O 1.31702 * 120.00241 * 269.72950 * 17 16 14 19 19 O 1.31697 * 119.99703 * 89.72516 * 17 16 14 20 20 H 0.96999 * 119.99787 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.17133 * 0.02562 * 10 9 7 22 22 H 0.96997 * 119.99713 * 0.02562 * 12 11 10 23 23 H 0.97000 * 120.00097 * 179.97438 * 12 11 10 24 24 H 1.07999 * 119.74550 * 179.97438 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 2.3872 2.0981 -1.3963 5 1 1.4743 2.6251 0.7877 6 1 3.5686 1.4160 0.6085 7 6 2.0277 -1.2689 -0.0006 8 1 1.5308 -2.1794 0.3000 9 6 3.3754 -1.3011 -0.3915 10 6 3.8866 -0.3154 -1.2630 11 6 5.2143 -0.3590 -1.6403 12 7 5.7262 0.6138 -2.5020 13 6 6.0456 -1.3724 -1.1629 14 6 5.5515 -2.3412 -0.3011 15 17 6.6036 -3.5895 0.2890 16 6 4.2302 -2.3208 0.0838 17 7 3.7076 -3.3610 0.9980 18 8 3.1991 -4.4729 0.5085 19 8 3.7511 -3.1745 2.3010 20 1 -0.4850 0.8401 0.0004 21 1 3.2427 0.4689 -1.6329 22 1 5.1493 1.3192 -2.8344 23 1 6.6587 0.5845 -2.7674 24 1 7.0828 -1.4004 -1.4626 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716685.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:59 Heat of formation + Delta-G solvation = 24.852647 kcal Electronic energy + Delta-G solvation = -15043.718141 eV Core-core repulsion = 12179.639883 eV Total energy + Delta-G solvation = -2864.078258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.97581 -37.32677 -36.21814 -34.59751 -33.48852 -33.24902 -30.92214 -28.93654 -26.12236 -24.39308 -22.21941 -20.67949 -18.36793 -17.54788 -17.11870 -16.77376 -16.03041 -15.33326 -14.73569 -14.18764 -13.51495 -13.27214 -13.13396 -12.69268 -12.31989 -11.74252 -11.51904 -11.20950 -10.80580 -10.67184 -10.41572 -10.23031 -10.05982 -9.90710 -9.64305 -9.57344 -8.26799 -7.64221 -7.27457 -5.20064 0.92486 1.86394 2.11350 2.28687 2.61724 2.70232 2.86805 2.93476 3.51904 3.83345 4.26805 4.68541 5.60571 5.83141 5.94975 6.13745 6.27563 6.47074 6.78031 6.83314 7.05423 7.11330 7.51105 7.72230 7.79458 7.98684 8.03189 8.14995 9.29540 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.012133 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.437478 B = 2307.273029 C = 3283.277666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.082 3.918 3 Si 0.932 3.068 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.233 1.233 7 C -0.407 4.407 8 H 0.100 0.900 9 C 0.149 3.851 10 C -0.308 4.308 11 C 0.282 3.718 12 N -0.879 5.879 13 C -0.301 4.301 14 C 0.105 3.895 15 Cl -0.083 7.083 16 C -0.157 4.157 17 N 0.013 4.987 18 O -0.180 6.180 19 O -0.168 6.168 20 H 0.304 0.696 21 H 0.118 0.882 22 H 0.395 0.605 23 H 0.394 0.606 24 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 4.961 -3.794 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.151 4.151 3 Si 0.756 3.244 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.156 1.156 7 C -0.430 4.430 8 H 0.118 0.882 9 C 0.143 3.857 10 C -0.334 4.334 11 C 0.177 3.823 12 N -0.418 5.418 13 C -0.324 4.324 14 C 0.076 3.924 15 Cl -0.054 7.054 16 C -0.241 4.241 17 N 0.508 4.492 18 O -0.383 6.383 19 O -0.375 6.375 20 H 0.116 0.884 21 H 0.135 0.865 22 H 0.223 0.777 23 H 0.221 0.779 24 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.969 5.380 -4.165 9.740 hybrid contribution 0.151 0.428 0.013 0.454 sum 7.120 5.808 -4.152 10.083 Atomic orbital electron populations 1.68984 1.09431 1.32681 1.24167 1.27874 0.94747 1.02767 0.89664 0.85976 0.81809 0.77178 0.79419 1.18833 1.20804 1.15579 1.20930 0.92512 0.95856 1.33751 0.88235 1.16494 0.91612 0.87926 0.89640 1.20219 0.94372 1.07087 1.11680 1.17264 0.91493 0.86719 0.86806 1.42410 1.13718 1.31271 1.54364 1.19536 0.99980 1.00857 1.12046 1.19755 0.87024 0.90290 0.95304 1.98347 1.66926 1.52737 1.87408 1.19422 0.92885 1.00295 1.11522 1.50093 0.94999 1.01413 1.02660 1.96170 1.46858 1.14379 1.80886 1.96160 1.61708 1.86218 0.93393 0.88370 0.86494 0.77732 0.77902 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.17 13.89 55.98 0.78 -16.40 14 2 C 0.08 1.91 5.59 -15.19 -0.08 1.82 14 3 Si 0.93 18.07 24.57 -169.99 -4.18 13.89 14 4 H -0.26 -4.66 6.69 56.52 0.38 -4.28 14 5 H -0.28 -5.19 7.11 56.52 0.40 -4.78 14 6 H -0.23 -4.75 6.85 56.52 0.39 -4.36 14 7 C -0.41 -10.53 9.50 -35.45 -0.34 -10.87 14 8 H 0.10 2.84 7.72 -52.49 -0.41 2.43 14 9 C 0.15 3.66 5.27 -106.83 -0.56 3.10 14 10 C -0.31 -6.62 7.14 -38.53 -0.27 -6.90 14 11 C 0.28 5.31 6.74 -83.87 -0.57 4.74 14 12 N -0.88 -12.10 9.09 32.37 0.29 -11.80 14 13 C -0.30 -5.78 9.69 -38.92 -0.38 -6.16 14 14 C 0.10 2.29 6.31 -39.61 -0.25 2.04 14 15 Cl -0.08 -1.63 28.40 -51.86 -1.47 -3.10 14 16 C -0.16 -3.87 6.30 -79.00 -0.50 -4.37 14 17 N 0.01 0.34 3.44 34.42 0.12 0.46 14 18 O -0.18 -4.69 19.97 -31.57 -0.63 -5.32 14 19 O -0.17 -4.36 19.97 -31.57 -0.63 -4.99 14 20 H 0.30 6.12 8.27 -40.82 -0.34 5.79 14 21 H 0.12 2.38 4.26 -52.48 -0.22 2.15 14 22 H 0.39 4.78 8.83 -40.82 -0.36 4.42 14 23 H 0.39 4.29 8.84 -40.82 -0.36 3.93 14 24 H 0.12 2.00 8.06 -52.49 -0.42 1.58 14 LS Contribution 242.48 15.07 3.65 3.65 Total: -1.00 -27.34 242.48 -5.96 -33.30 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -0.94 Total: 6.88 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.95 Total: -16.59 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: 1.19 Total: -27.74 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.26 Total: -10.30 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -4.18 Total: 13.89 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.47 Total: -3.10 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.34 -5.96 -33.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716685.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.155 kcal (2) G-P(sol) polarization free energy of solvation -27.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds