Wall clock time and date at job start Mon Mar 30 2020 05:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29519 * 1 3 3 Si 1.86798 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47080 * 274.23126 * 3 2 1 5 5 H 1.48495 * 109.47299 * 34.23650 * 3 2 1 6 6 H 1.48498 * 109.47123 * 154.23620 * 3 2 1 7 7 C 1.46516 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99898 * 341.22965 * 7 2 1 9 9 C 1.40358 * 120.00330 * 161.23871 * 7 2 1 10 10 C 1.41157 * 120.24254 * 334.50961 * 9 7 2 11 11 C 1.38098 * 119.65894 * 180.02562 * 10 9 7 12 12 N 1.39672 * 119.92721 * 180.02562 * 11 10 9 13 13 C 1.39496 * 120.15537 * 0.03089 * 11 10 9 14 14 C 1.38759 * 120.50402 * 359.67131 * 13 11 10 15 15 Cl 1.73594 * 119.82947 * 180.32554 * 14 13 11 16 16 C 1.37636 * 120.34258 * 0.60721 * 14 13 11 17 17 N 1.48019 * 120.08609 * 179.69237 * 16 14 13 18 18 O 1.31702 * 120.00241 * 269.72950 * 17 16 14 19 19 O 1.31697 * 119.99703 * 89.72516 * 17 16 14 20 20 H 0.96999 * 119.99787 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.17133 * 0.02562 * 10 9 7 22 22 H 0.96997 * 119.99713 * 0.02562 * 12 11 10 23 23 H 0.97000 * 120.00097 * 179.97438 * 12 11 10 24 24 H 1.07999 * 119.74550 * 179.97438 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 2.3872 2.0981 -1.3963 5 1 1.4743 2.6251 0.7877 6 1 3.5686 1.4160 0.6085 7 6 2.0277 -1.2689 -0.0006 8 1 1.5308 -2.1794 0.3000 9 6 3.3754 -1.3011 -0.3915 10 6 3.8866 -0.3154 -1.2630 11 6 5.2143 -0.3590 -1.6403 12 7 5.7262 0.6138 -2.5020 13 6 6.0456 -1.3724 -1.1629 14 6 5.5515 -2.3412 -0.3011 15 17 6.6036 -3.5895 0.2890 16 6 4.2302 -2.3208 0.0838 17 7 3.7076 -3.3610 0.9980 18 8 3.1991 -4.4729 0.5085 19 8 3.7511 -3.1745 2.3010 20 1 -0.4850 0.8401 0.0004 21 1 3.2427 0.4689 -1.6329 22 1 5.1493 1.3192 -2.8344 23 1 6.6587 0.5845 -2.7674 24 1 7.0828 -1.4004 -1.4626 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716685.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:59 Heat of formation + Delta-G solvation = 6.310450 kcal Electronic energy + Delta-G solvation = -15044.522191 eV Core-core repulsion = 12179.639883 eV Total energy + Delta-G solvation = -2864.882308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72288 -39.19737 -37.82756 -36.23612 -35.29220 -35.08977 -32.62128 -30.59387 -27.87088 -26.21256 -23.91585 -22.39212 -20.08774 -19.37342 -19.14783 -18.28204 -17.58636 -16.95322 -16.41857 -15.80881 -15.23211 -14.88205 -14.77012 -14.32231 -13.96222 -13.34904 -13.10806 -12.80175 -12.48687 -12.45467 -12.33617 -11.95127 -11.81983 -11.71820 -11.54241 -11.16714 -9.95929 -9.33957 -8.72042 -7.03695 -1.10731 0.16182 0.45092 0.46108 0.90869 1.15522 1.34967 1.42619 1.96354 2.20051 2.90645 3.03169 3.94742 4.17837 4.32532 4.43488 4.58892 4.82895 5.13672 5.20797 5.24005 5.49936 5.67876 5.74769 6.05391 6.18498 6.54742 7.05770 7.68073 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.012133 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.437478 B = 2307.273029 C = 3283.277666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.050 3.950 3 Si 0.985 3.015 4 H -0.226 1.226 5 H -0.266 1.266 6 H -0.247 1.247 7 C -0.460 4.460 8 H 0.047 0.953 9 C 0.146 3.854 10 C -0.320 4.320 11 C 0.297 3.703 12 N -0.850 5.850 13 C -0.274 4.274 14 C 0.090 3.910 15 Cl -0.067 7.067 16 C -0.202 4.202 17 N 0.019 4.981 18 O -0.203 6.203 19 O -0.179 6.179 20 H 0.318 0.682 21 H 0.131 0.869 22 H 0.409 0.591 23 H 0.414 0.586 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.590 7.563 -5.594 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.150 1.150 5 H -0.192 1.192 6 H -0.171 1.171 7 C -0.484 4.484 8 H 0.066 0.934 9 C 0.140 3.860 10 C -0.346 4.346 11 C 0.188 3.812 12 N -0.390 5.390 13 C -0.297 4.297 14 C 0.061 3.939 15 Cl -0.038 7.038 16 C -0.286 4.286 17 N 0.512 4.488 18 O -0.403 6.403 19 O -0.386 6.386 20 H 0.132 0.868 21 H 0.148 0.852 22 H 0.239 0.761 23 H 0.245 0.755 24 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.634 7.986 -6.024 13.889 hybrid contribution -0.480 -0.417 0.492 0.804 sum 9.154 7.569 -5.532 13.103 Atomic orbital electron populations 1.68966 1.10629 1.34458 1.25191 1.28681 0.95439 1.04883 0.88760 0.85246 0.79702 0.73269 0.81456 1.14953 1.19179 1.17064 1.20782 0.93985 0.95564 1.38114 0.93428 1.16741 0.91040 0.88671 0.89520 1.20348 0.95918 1.06817 1.11469 1.17283 0.90457 0.87119 0.86358 1.42345 1.15065 1.29674 1.51911 1.20072 1.01616 0.98894 1.09152 1.20020 0.86343 0.91518 0.95998 1.98348 1.65910 1.52238 1.87337 1.19871 0.94450 1.00942 1.13380 1.50370 0.94199 1.01530 1.02731 1.96142 1.47895 1.15449 1.80797 1.96123 1.61978 1.86239 0.94305 0.86837 0.85171 0.76086 0.75527 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -37.28 13.89 23.21 0.32 -36.96 14 2 C 0.05 2.40 5.59 87.19 0.49 2.89 14 3 Si 0.99 35.47 24.57 68.60 1.69 37.16 14 4 H -0.23 -6.77 6.69 99.48 0.67 -6.10 14 5 H -0.27 -8.85 7.11 99.48 0.71 -8.15 14 6 H -0.25 -9.42 6.85 99.48 0.68 -8.73 14 7 C -0.46 -25.11 9.50 24.95 0.24 -24.87 14 8 H 0.05 2.98 7.72 -2.91 -0.02 2.96 14 9 C 0.15 7.24 5.27 -21.30 -0.11 7.13 14 10 C -0.32 -12.98 7.14 22.95 0.16 -12.81 14 11 C 0.30 9.83 6.74 38.16 0.26 10.08 14 12 N -0.85 -18.17 9.09 -51.50 -0.47 -18.63 14 13 C -0.27 -9.37 9.69 22.70 0.22 -9.15 14 14 C 0.09 3.78 6.31 22.25 0.14 3.92 14 15 Cl -0.07 -2.53 28.40 -2.72 -0.08 -2.61 14 16 C -0.20 -10.10 6.30 36.98 0.23 -9.86 14 17 N 0.02 1.00 3.44 -45.02 -0.15 0.85 14 18 O -0.20 -11.10 19.97 3.51 0.07 -11.03 14 19 O -0.18 -9.65 19.97 3.52 0.07 -9.58 14 20 H 0.32 12.98 8.27 -92.71 -0.77 12.22 14 21 H 0.13 4.86 4.26 -2.91 -0.01 4.84 14 22 H 0.41 7.29 8.83 -92.71 -0.82 6.47 14 23 H 0.41 6.16 8.84 -92.71 -0.82 5.34 14 24 H 0.16 4.26 8.06 -2.91 -0.02 4.24 14 Total: -1.00 -63.06 242.48 2.66 -60.39 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -0.41 Total: 13.09 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 1.63 Total: -32.68 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.30 Total: -54.74 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.14 Total: -20.61 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 1.69 Total: 37.16 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -0.08 Total: -2.61 kcal Total: -63.06 2.66 -60.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716685.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.705 kcal (2) G-P(sol) polarization free energy of solvation -63.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds