Wall clock time and date at job start Mon Mar 30 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29519 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48500 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47134 * 300.00213 * 3 2 1 6 6 H 1.48494 * 109.47135 * 60.00187 * 3 2 1 7 7 C 1.46525 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99800 * 192.01022 * 7 2 1 9 9 C 1.40355 * 119.99827 * 12.01006 * 7 2 1 10 10 C 1.41335 * 120.25127 * 25.76733 * 9 7 2 11 11 C 1.37584 * 119.83048 * 180.29525 * 10 9 7 12 12 Cl 1.73598 * 119.82747 * 179.72760 * 11 10 9 13 13 C 1.38803 * 120.34472 * 359.70181 * 11 10 9 14 14 C 1.39446 * 120.50585 * 0.02562 * 13 11 10 15 15 N 1.39671 * 119.91884 * 179.97438 * 14 13 11 16 16 C 1.38146 * 120.15689 * 359.97438 * 14 13 11 17 17 N 1.48022 * 120.17179 * 180.02562 * 16 14 13 18 18 O 1.31700 * 120.00198 * 89.99564 * 17 16 14 19 19 O 1.31700 * 119.99590 * 269.72511 * 17 16 14 20 20 H 0.96997 * 119.99681 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.08132 * 0.02562 * 10 9 7 22 22 H 1.08001 * 119.74355 * 180.02562 * 13 11 10 23 23 H 0.97007 * 119.99378 * 179.97438 * 15 14 13 24 24 H 0.96998 * 120.00450 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 3.6892 1.3463 -0.0006 5 1 1.8704 2.3965 -1.2125 6 1 1.8705 2.3963 1.2125 7 6 2.0278 -1.2690 -0.0006 8 1 3.0900 -1.2793 0.1940 9 6 1.3489 -2.4710 -0.2540 10 6 0.1585 -2.4695 -1.0159 11 6 -0.5032 -3.6520 -1.2539 12 17 -1.9692 -3.6492 -2.1837 13 6 -0.0044 -4.8474 -0.7551 14 6 1.1719 -4.8661 -0.0065 15 7 1.6626 -6.0759 0.4900 16 6 1.8532 -3.6909 0.2451 17 7 3.1022 -3.7105 1.0392 18 8 4.2631 -3.8655 0.4369 19 8 3.0530 -3.5675 2.3474 20 1 -0.4849 0.8400 0.0004 21 1 -0.2331 -1.5419 -1.4064 22 1 -0.5315 -5.7701 -0.9482 23 1 2.4810 -6.0902 1.0106 24 1 1.1850 -6.9017 0.3144 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716800.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:03 Heat of formation + Delta-G solvation = 5.825084 kcal Electronic energy + Delta-G solvation = -14962.588753 eV Core-core repulsion = 12097.685397 eV Total energy + Delta-G solvation = -2864.903356 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73377 -38.98600 -37.35823 -36.60291 -35.29289 -34.71888 -32.38564 -30.12374 -27.87852 -26.53439 -23.24785 -22.66155 -19.95197 -19.16068 -19.12090 -18.32932 -17.59240 -16.81408 -16.37244 -15.74404 -15.18164 -14.80167 -14.56129 -13.98791 -13.51239 -13.08340 -12.98636 -12.84755 -12.58296 -12.42775 -12.11722 -11.92934 -11.76183 -11.72445 -11.57041 -10.99088 -9.86600 -9.12139 -8.79487 -6.89960 -1.10728 0.28157 0.55438 0.76050 1.27898 1.29876 1.38593 1.45789 2.04836 2.27018 2.75627 3.05650 4.09633 4.42787 4.53318 4.61222 4.71010 4.81321 5.18914 5.36319 5.50889 5.65488 5.78223 5.96304 6.13770 6.24736 6.42641 6.73398 7.79009 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.012523 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.791320 B = 2235.425145 C = 3724.964661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.045 3.955 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.242 1.242 6 H -0.252 1.252 7 C -0.466 4.466 8 H 0.071 0.929 9 C 0.148 3.852 10 C -0.209 4.209 11 C 0.057 3.943 12 Cl -0.074 7.074 13 C -0.310 4.310 14 C 0.306 3.694 15 N -0.865 5.865 16 C -0.238 4.238 17 N 0.022 4.978 18 O -0.194 6.194 19 O -0.192 6.192 20 H 0.315 0.685 21 H 0.138 0.862 22 H 0.148 0.852 23 H 0.393 0.607 24 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -1.963 -2.394 4.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.188 1.188 5 H -0.166 1.166 6 H -0.175 1.175 7 C -0.490 4.490 8 H 0.089 0.911 9 C 0.143 3.857 10 C -0.231 4.231 11 C 0.029 3.971 12 Cl -0.045 7.045 13 C -0.335 4.335 14 C 0.198 3.802 15 N -0.406 5.406 16 C -0.325 4.325 17 N 0.514 4.486 18 O -0.397 6.397 19 O -0.395 6.395 20 H 0.129 0.871 21 H 0.155 0.845 22 H 0.166 0.834 23 H 0.220 0.780 24 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.790 -1.816 -2.885 5.097 hybrid contribution 0.807 0.191 0.480 0.958 sum -2.982 -1.625 -2.405 4.162 Atomic orbital electron populations 1.69041 1.09763 1.33608 1.24433 1.28303 0.95577 1.04517 0.89954 0.84973 0.79073 0.74231 0.80567 1.18793 1.16572 1.17549 1.21127 0.95880 0.91303 1.40709 0.91057 1.16984 0.91546 0.89210 0.87921 1.21008 0.98416 0.97229 1.06413 1.20547 0.87770 0.94518 0.94226 1.98287 1.35127 1.98974 1.72121 1.19740 1.00382 0.97900 1.15491 1.16733 0.90527 0.83255 0.89662 1.42339 1.30598 1.06262 1.61372 1.19939 0.93290 0.97780 1.21502 1.50375 1.04347 0.91893 1.02023 1.96139 1.16415 1.54417 1.72695 1.96148 1.96143 1.54417 0.92818 0.87132 0.84487 0.83409 0.78005 0.75037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -33.40 10.85 23.21 0.25 -33.14 14 2 C 0.04 2.01 5.41 87.20 0.47 2.48 14 3 Si 0.99 33.99 29.66 68.60 2.03 36.02 14 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 5 H -0.24 -7.48 7.11 99.48 0.71 -6.78 14 6 H -0.25 -8.07 7.11 99.48 0.71 -7.37 14 7 C -0.47 -24.08 8.97 24.95 0.22 -23.86 14 8 H 0.07 3.85 7.63 -2.91 -0.02 3.83 14 9 C 0.15 7.67 5.61 -21.29 -0.12 7.55 14 10 C -0.21 -9.95 8.53 22.88 0.20 -9.75 14 11 C 0.06 2.39 6.30 22.25 0.14 2.53 14 12 Cl -0.07 -2.57 28.94 -2.72 -0.08 -2.65 14 13 C -0.31 -12.18 9.69 22.70 0.22 -11.96 14 14 C 0.31 12.88 6.74 38.16 0.26 13.14 14 15 N -0.87 -28.72 9.07 -51.51 -0.47 -29.18 14 16 C -0.24 -11.78 6.33 37.06 0.23 -11.54 14 17 N 0.02 1.10 3.19 -44.83 -0.14 0.96 14 18 O -0.19 -9.63 19.97 3.51 0.07 -9.56 14 19 O -0.19 -9.72 19.97 3.51 0.07 -9.65 14 20 H 0.32 11.99 8.27 -92.71 -0.77 11.23 14 21 H 0.14 6.61 6.07 -2.91 -0.02 6.59 14 22 H 0.15 4.81 8.06 -2.91 -0.02 4.78 14 23 H 0.39 13.30 8.06 -92.70 -0.75 12.55 14 24 H 0.42 10.47 8.84 -92.71 -0.82 9.65 14 Total: -1.00 -56.05 247.47 3.09 -52.96 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.28 Total: 25.65 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 1.62 Total: -31.41 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.36 Total: -61.37 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.14 Total: -19.20 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.65 kcal Total: -56.05 3.09 -52.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716800.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.790 kcal (2) G-P(sol) polarization free energy of solvation -56.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds