Wall clock time and date at job start Mon Mar 30 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29457 * 1 3 3 Si 1.86799 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47219 * 274.85043 * 3 2 1 5 5 H 1.48505 * 109.47095 * 34.85041 * 3 2 1 6 6 H 1.48499 * 109.47042 * 154.84566 * 3 2 1 7 7 C 1.46671 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99797 * 164.47532 * 7 2 1 9 9 C 1.39295 * 120.00109 * 344.47772 * 7 2 1 10 10 C 1.41749 * 120.64611 * 335.65737 * 9 7 2 11 11 C 1.35744 * 119.86405 * 179.71846 * 10 9 7 12 12 N 1.48011 * 119.34448 * 180.27071 * 11 10 9 13 13 O 1.31701 * 120.00380 * 0.24985 * 12 11 10 14 14 O 1.31708 * 120.00171 * 180.24758 * 12 11 10 15 15 C 1.39492 * 121.31193 * 0.52703 * 11 10 9 16 16 Cl 1.73597 * 119.31885 * 179.74439 * 15 11 10 17 17 C 1.37941 * 121.36923 * 359.46537 * 15 11 10 18 18 C 1.39072 * 120.01034 * 0.26293 * 17 15 11 19 19 N 1.37576 * 120.63246 * 179.97438 * 18 17 15 20 20 H 0.97005 * 119.99590 * 359.97438 * 1 2 3 21 21 H 1.08007 * 120.07029 * 359.97438 * 10 9 7 22 22 H 1.08003 * 119.99561 * 180.23227 * 17 15 11 23 23 H 0.97001 * 119.99704 * 359.97438 * 19 18 17 24 24 H 0.96995 * 120.00039 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 2.3737 2.1056 -1.3950 5 1 1.4811 2.6209 0.8001 6 1 3.5736 1.4126 0.5951 7 6 2.0278 -1.2702 -0.0006 8 1 3.0783 -1.2872 -0.2509 9 6 1.3694 -2.4547 0.3217 10 6 0.1997 -2.4364 1.1222 11 6 -0.4325 -3.5996 1.4219 12 7 -1.6564 -3.5666 2.2536 13 8 -2.1245 -2.4160 2.6910 14 8 -2.2774 -4.6880 2.5563 15 6 0.0512 -4.8260 0.9660 16 17 -0.7947 -6.2826 1.3858 17 6 1.1847 -4.9048 0.1837 18 6 1.8735 -3.7471 -0.1616 19 7 3.0056 -3.8109 -0.9406 20 1 -0.4850 0.8401 0.0004 21 1 -0.1901 -1.4985 1.4895 22 1 1.5375 -5.8659 -0.1602 23 1 3.3307 -4.6693 -1.2543 24 1 3.4786 -2.9976 -1.1763 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716889.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:56 Heat of formation + Delta-G solvation = 15.763666 kcal Electronic energy + Delta-G solvation = -14898.843526 eV Core-core repulsion = 12034.371140 eV Total energy + Delta-G solvation = -2864.472386 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49057 -39.02118 -37.37222 -35.82862 -35.21316 -35.08638 -31.91347 -30.69847 -27.39327 -26.20817 -23.47975 -22.36668 -20.04465 -19.02962 -18.37055 -17.91215 -17.70690 -16.81168 -16.72521 -15.26766 -15.08202 -14.69826 -14.36241 -14.34415 -13.50270 -13.00451 -12.87613 -12.74566 -12.39952 -12.37295 -11.98314 -11.86014 -11.61998 -11.45305 -11.21581 -10.91485 -9.75086 -9.02202 -8.73878 -6.29729 -1.36107 0.54211 0.60030 0.85199 1.35524 1.39949 1.45717 1.56871 2.09840 2.38992 3.14585 3.21479 3.83687 4.22047 4.54120 4.67334 4.85272 4.90355 5.17630 5.32709 5.42273 5.66922 6.11423 6.15257 6.36995 6.50759 6.76215 7.12452 7.98873 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.009119 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.853078 B = 3069.883314 C = 4014.796064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.454 4.454 8 H 0.116 0.884 9 C 0.048 3.952 10 C -0.177 4.177 11 C -0.009 4.009 12 N 0.007 4.993 13 O -0.297 6.297 14 O -0.204 6.204 15 C -0.062 4.062 16 Cl -0.054 7.054 17 C -0.181 4.181 18 C 0.199 3.801 19 N -0.823 5.823 20 H 0.304 0.696 21 H 0.126 0.874 22 H 0.161 0.839 23 H 0.412 0.588 24 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.202 -2.380 -4.788 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.195 4.195 3 Si 0.814 3.186 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.166 1.166 7 C -0.479 4.479 8 H 0.134 0.866 9 C 0.042 3.958 10 C -0.201 4.201 11 C -0.102 4.102 12 N 0.460 4.540 13 O -0.461 6.461 14 O -0.394 6.394 15 C -0.093 4.093 16 Cl -0.025 7.025 17 C -0.207 4.207 18 C 0.086 3.914 19 N -0.362 5.362 20 H 0.116 0.884 21 H 0.143 0.857 22 H 0.179 0.821 23 H 0.243 0.757 24 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 9.278 -2.246 -5.014 10.783 hybrid contribution -0.641 0.584 0.341 0.932 sum 8.637 -1.662 -4.673 9.960 Atomic orbital electron populations 1.69120 1.10770 1.32905 1.26861 1.28512 0.95118 1.05574 0.90308 0.84972 0.79478 0.74242 0.79901 1.17772 1.20086 1.16631 1.20778 0.97941 0.89633 1.39574 0.86578 1.18314 0.92415 0.91954 0.93108 1.20403 1.00857 0.94969 1.03883 1.19834 0.88272 0.96682 1.05394 1.50823 1.02778 1.01340 0.99017 1.96163 1.73175 1.14488 1.62260 1.96139 1.61822 1.17315 1.64132 1.19967 0.98296 0.84451 1.06539 1.98317 1.77134 1.34961 1.92112 1.20008 0.96594 0.98400 1.05725 1.19276 0.89123 0.92236 0.90728 1.41730 1.26638 1.12806 1.54986 0.88368 0.85658 0.82142 0.75675 0.75842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.38 10.96 23.24 0.25 -36.12 14 2 C 0.03 1.27 5.36 87.25 0.47 1.74 14 3 Si 1.00 30.95 29.67 68.60 2.04 32.99 14 4 H -0.25 -7.41 7.11 99.48 0.71 -6.70 14 5 H -0.28 -8.85 7.11 99.48 0.71 -8.14 14 6 H -0.24 -7.11 7.11 99.48 0.71 -6.40 14 7 C -0.45 -18.90 8.86 24.73 0.22 -18.68 14 8 H 0.12 4.07 6.87 -2.91 -0.02 4.05 14 9 C 0.05 2.16 5.77 -19.89 -0.11 2.05 14 10 C -0.18 -9.11 8.23 22.56 0.19 -8.93 14 11 C -0.01 -0.48 6.83 36.10 0.25 -0.23 14 12 N 0.01 0.39 4.98 -47.13 -0.23 0.15 14 13 O -0.30 -17.05 19.05 3.51 0.07 -16.98 14 14 O -0.20 -10.55 16.43 3.50 0.06 -10.50 14 15 C -0.06 -2.67 6.33 22.50 0.14 -2.53 14 16 Cl -0.05 -2.14 25.58 -2.72 -0.07 -2.21 14 17 C -0.18 -6.53 9.64 22.40 0.22 -6.32 14 18 C 0.20 7.19 6.97 40.71 0.28 7.47 14 19 N -0.82 -20.58 8.95 -47.24 -0.42 -21.01 14 20 H 0.30 12.94 8.27 -92.70 -0.77 12.18 14 21 H 0.13 7.07 5.54 -2.91 -0.02 7.06 14 22 H 0.16 4.51 8.06 -2.91 -0.02 4.49 14 23 H 0.41 7.30 8.83 -92.71 -0.82 6.48 14 24 H 0.41 9.44 7.24 -92.71 -0.67 8.77 14 Total: -1.00 -60.46 239.74 3.14 -57.32 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.20 Total: 21.79 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 1.65 Total: -25.43 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.40 Total: -56.97 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: 0.12 Total: -27.48 kcal Atomic # 14 Polarization: 30.95 SS G_CDS: 2.04 Total: 32.99 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.07 Total: -2.21 kcal Total: -60.46 3.14 -57.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716889.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.082 kcal (2) G-P(sol) polarization free energy of solvation -60.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds