Wall clock time and date at job start Mon Mar 30 2020 05:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29512 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48498 * 109.47533 * 240.00393 * 3 2 1 5 5 H 1.48506 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46975 * 120.00174 * 3 2 1 7 7 C 1.46526 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99602 * 192.43321 * 7 2 1 9 9 C 1.40351 * 120.00155 * 12.43812 * 7 2 1 10 10 C 1.41160 * 120.24564 * 25.20121 * 9 7 2 11 11 C 1.38107 * 119.65395 * 179.97438 * 10 9 7 12 12 N 1.39664 * 119.91864 * 179.97438 * 11 10 9 13 13 C 1.39487 * 120.15921 * 359.97438 * 11 10 9 14 14 N 1.48015 * 119.74552 * 180.02562 * 13 11 10 15 15 O 1.31701 * 120.00108 * 89.99843 * 14 13 11 16 16 O 1.31698 * 119.99821 * 269.71661 * 14 13 11 17 17 C 1.38761 * 120.50671 * 0.29275 * 13 11 10 18 18 Cl 1.73597 * 119.83040 * 179.70997 * 17 13 11 19 19 C 1.37638 * 120.33824 * 359.44536 * 17 13 11 20 20 H 0.97003 * 119.99856 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.17285 * 359.97438 * 10 9 7 22 22 H 0.96998 * 120.00293 * 179.97438 * 12 11 10 23 23 H 0.96998 * 120.00239 * 359.97438 * 12 11 10 24 24 H 1.08001 * 120.07941 * 180.27523 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 3.0829 1.6964 -1.2125 5 1 1.2642 2.7464 0.0006 6 1 3.0830 1.6962 1.2125 7 6 2.0277 -1.2690 -0.0006 8 1 3.0887 -1.2800 0.2008 9 6 1.3506 -2.4701 -0.2629 10 6 0.1601 -2.4642 -1.0214 11 6 -0.4959 -3.6532 -1.2727 12 7 -1.6745 -3.6538 -2.0220 13 6 0.0158 -4.8536 -0.7798 14 7 -0.6944 -6.1227 -1.0550 15 8 -0.4023 -6.8205 -2.1331 16 8 -1.6147 -6.5570 -0.2190 17 6 1.1825 -4.8665 -0.0288 18 17 1.7996 -6.3696 0.5823 19 6 1.8560 -3.6942 0.2295 20 1 -0.4850 0.8401 0.0004 21 1 -0.2356 -1.5347 -1.4032 22 1 -2.1360 -4.4882 -2.1996 23 1 -2.0315 -2.8196 -2.3650 24 1 2.7661 -3.7096 0.8108 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716916.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:43 Heat of formation + Delta-G solvation = 21.582091 kcal Electronic energy + Delta-G solvation = -14813.169012 eV Core-core repulsion = 11948.948932 eV Total energy + Delta-G solvation = -2864.220080 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.96219 -37.28159 -36.04987 -34.60764 -33.52065 -33.34701 -30.52989 -27.98919 -27.07344 -24.02063 -21.69742 -20.91095 -18.21774 -17.56392 -17.37777 -16.66149 -15.81409 -15.34555 -14.55773 -13.82338 -13.52371 -13.34212 -12.92144 -12.50943 -11.88093 -11.59000 -11.41849 -11.14288 -10.73260 -10.64809 -10.55894 -10.45041 -10.11719 -9.96386 -9.92901 -9.42150 -8.16407 -7.48043 -7.00858 -5.04316 0.63298 2.01063 2.16783 2.48017 2.70278 2.74370 2.76283 2.80082 3.45276 3.90724 4.39512 4.98191 5.84871 5.98638 6.23589 6.34514 6.54329 6.56356 6.95860 7.08594 7.21068 7.43776 7.52876 7.69815 8.03219 8.17585 8.20884 8.34868 9.41651 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.007732 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.038937 B = 3620.571294 C = 4253.237252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.070 3.930 3 Si 0.928 3.072 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.418 4.418 8 H 0.096 0.904 9 C 0.146 3.854 10 C -0.250 4.250 11 C 0.283 3.717 12 N -0.883 5.883 13 C -0.208 4.208 14 N 0.005 4.995 15 O -0.177 6.177 16 O -0.177 6.177 17 C 0.072 3.928 18 Cl -0.092 7.092 19 C -0.225 4.225 20 H 0.298 0.702 21 H 0.141 0.859 22 H 0.386 0.614 23 H 0.401 0.599 24 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 2.444 -0.937 2.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.160 4.160 3 Si 0.750 3.250 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.443 4.443 8 H 0.114 0.886 9 C 0.142 3.858 10 C -0.275 4.275 11 C 0.178 3.822 12 N -0.423 5.423 13 C -0.295 4.295 14 N 0.499 4.501 15 O -0.381 6.381 16 O -0.381 6.381 17 C 0.044 3.956 18 Cl -0.064 7.064 19 C -0.246 4.246 20 H 0.110 0.890 21 H 0.158 0.842 22 H 0.213 0.787 23 H 0.229 0.771 24 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.231 3.097 -0.692 3.403 hybrid contribution -0.323 0.085 -0.138 0.362 sum 0.908 3.181 -0.830 3.411 Atomic orbital electron populations 1.69098 1.08980 1.31571 1.25709 1.27667 0.94768 1.02582 0.90970 0.86014 0.80217 0.77784 0.80969 1.17890 1.19667 1.18026 1.21006 0.96566 0.89053 1.37718 0.88554 1.17277 0.90473 0.91319 0.86779 1.20770 1.01970 0.94255 1.10530 1.16833 0.85975 0.90398 0.89019 1.42355 1.26783 1.11293 1.61836 1.18698 1.03378 0.79048 1.28346 1.50392 0.98236 1.02420 0.99072 1.96173 1.70139 1.57548 1.14286 1.96180 1.24863 1.75423 1.41674 1.19733 0.92471 0.86835 0.96610 1.98327 1.87344 1.33816 1.86890 1.20867 1.03851 0.89869 1.09985 0.88973 0.84196 0.78717 0.77057 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -15.38 10.84 55.98 0.61 -14.77 14 2 C 0.07 1.41 5.41 -15.19 -0.08 1.33 14 3 Si 0.93 14.97 29.66 -169.99 -5.04 9.93 14 4 H -0.25 -4.12 7.11 56.52 0.40 -3.71 14 5 H -0.27 -4.27 7.11 56.52 0.40 -3.87 14 6 H -0.26 -4.13 7.11 56.52 0.40 -3.72 14 7 C -0.42 -9.19 9.32 -35.45 -0.33 -9.52 14 8 H 0.10 1.97 7.96 -52.48 -0.42 1.55 14 9 C 0.15 3.39 5.62 -106.83 -0.60 2.79 14 10 C -0.25 -5.73 8.60 -38.52 -0.33 -6.06 14 11 C 0.28 6.35 6.74 -83.87 -0.57 5.78 14 12 N -0.88 -16.57 9.07 32.37 0.29 -16.28 14 13 C -0.21 -4.91 6.31 -79.29 -0.50 -5.41 14 14 N 0.01 0.12 3.35 34.28 0.11 0.23 14 15 O -0.18 -4.13 19.97 -31.57 -0.63 -4.76 14 16 O -0.18 -4.18 19.97 -31.57 -0.63 -4.81 14 17 C 0.07 1.64 6.31 -39.61 -0.25 1.39 14 18 Cl -0.09 -1.91 28.40 -51.86 -1.47 -3.38 14 19 C -0.22 -5.03 9.58 -38.64 -0.37 -5.40 14 20 H 0.30 5.51 8.27 -40.82 -0.34 5.17 14 21 H 0.14 3.17 6.04 -52.49 -0.32 2.85 14 22 H 0.39 7.09 8.06 -40.82 -0.33 6.76 14 23 H 0.40 6.43 8.83 -40.82 -0.36 6.07 14 24 H 0.12 2.51 8.06 -52.49 -0.42 2.09 14 LS Contribution 247.68 15.07 3.73 3.73 Total: -1.00 -24.97 247.68 -7.04 -32.01 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.98 Total: 13.19 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -3.03 Total: -15.09 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 1.02 Total: -30.82 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.26 Total: -9.57 kcal Atomic # 14 Polarization: 14.97 SS G_CDS: -5.04 Total: 9.93 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -1.47 Total: -3.38 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -24.97 -7.04 -32.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716916.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.593 kcal (2) G-P(sol) polarization free energy of solvation -24.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds