Wall clock time and date at job start Mon Mar 30 2020 05:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29512 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48498 * 109.47533 * 240.00393 * 3 2 1 5 5 H 1.48506 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46975 * 120.00174 * 3 2 1 7 7 C 1.46526 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99602 * 192.43321 * 7 2 1 9 9 C 1.40351 * 120.00155 * 12.43812 * 7 2 1 10 10 C 1.41160 * 120.24564 * 25.20121 * 9 7 2 11 11 C 1.38107 * 119.65395 * 179.97438 * 10 9 7 12 12 N 1.39664 * 119.91864 * 179.97438 * 11 10 9 13 13 C 1.39487 * 120.15921 * 359.97438 * 11 10 9 14 14 N 1.48015 * 119.74552 * 180.02562 * 13 11 10 15 15 O 1.31701 * 120.00108 * 89.99843 * 14 13 11 16 16 O 1.31698 * 119.99821 * 269.71661 * 14 13 11 17 17 C 1.38761 * 120.50671 * 0.29275 * 13 11 10 18 18 Cl 1.73597 * 119.83040 * 179.70997 * 17 13 11 19 19 C 1.37638 * 120.33824 * 359.44536 * 17 13 11 20 20 H 0.97003 * 119.99856 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.17285 * 359.97438 * 10 9 7 22 22 H 0.96998 * 120.00293 * 179.97438 * 12 11 10 23 23 H 0.96998 * 120.00239 * 359.97438 * 12 11 10 24 24 H 1.08001 * 120.07941 * 180.27523 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 3.0829 1.6964 -1.2125 5 1 1.2642 2.7464 0.0006 6 1 3.0830 1.6962 1.2125 7 6 2.0277 -1.2690 -0.0006 8 1 3.0887 -1.2800 0.2008 9 6 1.3506 -2.4701 -0.2629 10 6 0.1601 -2.4642 -1.0214 11 6 -0.4959 -3.6532 -1.2727 12 7 -1.6745 -3.6538 -2.0220 13 6 0.0158 -4.8536 -0.7798 14 7 -0.6944 -6.1227 -1.0550 15 8 -0.4023 -6.8205 -2.1331 16 8 -1.6147 -6.5570 -0.2190 17 6 1.1825 -4.8665 -0.0288 18 17 1.7996 -6.3696 0.5823 19 6 1.8560 -3.6942 0.2295 20 1 -0.4850 0.8401 0.0004 21 1 -0.2356 -1.5347 -1.4032 22 1 -2.1360 -4.4882 -2.1996 23 1 -2.0315 -2.8196 -2.3650 24 1 2.7661 -3.7096 0.8108 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716916.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:43 Heat of formation + Delta-G solvation = 8.041220 kcal Electronic energy + Delta-G solvation = -14813.756189 eV Core-core repulsion = 11948.948932 eV Total energy + Delta-G solvation = -2864.807257 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69834 -39.05634 -37.72648 -36.23250 -35.36625 -34.97685 -32.24323 -29.66989 -28.80390 -25.75143 -23.41661 -22.61307 -19.86006 -19.33775 -19.21954 -18.30104 -17.45693 -16.85815 -16.26550 -15.48538 -15.07489 -15.03488 -14.62290 -14.09080 -13.44515 -13.06332 -12.94279 -12.75305 -12.49640 -12.29127 -12.15487 -12.10272 -11.82182 -11.79089 -11.50353 -11.02413 -9.89849 -9.03825 -8.67141 -6.74688 -1.20202 0.30201 0.37408 0.79484 1.01536 1.40927 1.47869 1.54569 2.11246 2.33675 2.83713 3.26870 4.13024 4.26777 4.54550 4.67749 4.87259 4.90364 5.23127 5.37228 5.54682 5.69251 5.73699 6.06863 6.38008 6.51062 6.56722 6.79746 7.89111 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.007732 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.038937 B = 3620.571294 C = 4253.237252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.036 3.964 3 Si 1.000 3.000 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.428 4.428 8 H 0.108 0.892 9 C 0.119 3.881 10 C -0.267 4.267 11 C 0.280 3.720 12 N -0.870 5.870 13 C -0.240 4.240 14 N 0.011 4.989 15 O -0.178 6.178 16 O -0.189 6.189 17 C 0.060 3.940 18 Cl -0.079 7.079 19 C -0.229 4.229 20 H 0.310 0.690 21 H 0.139 0.861 22 H 0.389 0.611 23 H 0.413 0.587 24 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 3.976 -0.872 4.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.192 4.192 3 Si 0.818 3.182 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.177 1.177 7 C -0.452 4.452 8 H 0.126 0.874 9 C 0.114 3.886 10 C -0.292 4.292 11 C 0.173 3.827 12 N -0.411 5.411 13 C -0.326 4.326 14 N 0.505 4.495 15 O -0.383 6.383 16 O -0.391 6.391 17 C 0.032 3.968 18 Cl -0.050 7.050 19 C -0.250 4.250 20 H 0.123 0.877 21 H 0.156 0.844 22 H 0.216 0.784 23 H 0.244 0.756 24 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.763 4.608 -0.622 4.973 hybrid contribution -0.492 -0.328 -0.138 0.607 sum 1.271 4.281 -0.759 4.529 Atomic orbital electron populations 1.69100 1.10313 1.33338 1.24618 1.28528 0.95449 1.05158 0.90035 0.84953 0.78871 0.73467 0.80888 1.17704 1.18664 1.17665 1.21463 0.97316 0.89749 1.36685 0.87426 1.17615 0.91151 0.92179 0.87630 1.20761 1.02598 0.94274 1.11585 1.16932 0.86724 0.90000 0.89033 1.42280 1.25718 1.12158 1.60980 1.18941 1.04314 0.79198 1.30148 1.50418 0.97956 1.02373 0.98800 1.96157 1.70079 1.57670 1.14409 1.96170 1.25360 1.75688 1.41926 1.19900 0.92556 0.87642 0.96722 1.98319 1.87125 1.32888 1.86682 1.21047 1.04238 0.89648 1.10042 0.87671 0.84363 0.78376 0.75594 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -30.59 10.84 23.21 0.25 -30.33 14 2 C 0.04 1.40 5.41 87.20 0.47 1.87 14 3 Si 1.00 28.56 29.66 68.60 2.03 30.59 14 4 H -0.25 -7.16 7.11 99.48 0.71 -6.45 14 5 H -0.26 -7.07 7.11 99.48 0.71 -6.36 14 6 H -0.25 -7.08 7.11 99.48 0.71 -6.37 14 7 C -0.43 -18.32 9.32 24.95 0.23 -18.09 14 8 H 0.11 4.23 7.96 -2.91 -0.02 4.21 14 9 C 0.12 5.49 5.62 -21.30 -0.12 5.37 14 10 C -0.27 -12.21 8.60 22.96 0.20 -12.01 14 11 C 0.28 12.53 6.74 38.16 0.26 12.78 14 12 N -0.87 -32.23 9.07 -51.51 -0.47 -32.70 14 13 C -0.24 -11.28 6.31 36.80 0.23 -11.05 14 14 N 0.01 0.53 3.35 -45.45 -0.15 0.38 14 15 O -0.18 -8.19 19.97 3.51 0.07 -8.12 14 16 O -0.19 -8.89 19.97 3.52 0.07 -8.82 14 17 C 0.06 2.75 6.31 22.25 0.14 2.89 14 18 Cl -0.08 -3.21 28.40 -2.72 -0.08 -3.29 14 19 C -0.23 -10.20 9.58 22.88 0.22 -9.98 14 20 H 0.31 10.93 8.27 -92.71 -0.77 10.17 14 21 H 0.14 6.24 6.04 -2.91 -0.02 6.22 14 22 H 0.39 14.06 8.06 -92.71 -0.75 13.32 14 23 H 0.41 12.95 8.83 -92.71 -0.82 12.13 14 24 H 0.14 5.49 8.06 -2.91 -0.02 5.47 14 Total: -1.00 -51.26 247.68 3.08 -48.18 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.28 Total: 32.33 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 1.63 Total: -28.21 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.37 Total: -62.66 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.14 Total: -16.95 kcal Atomic # 14 Polarization: 28.56 SS G_CDS: 2.03 Total: 30.59 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.08 Total: -3.29 kcal Total: -51.26 3.08 -48.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716916.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.220 kcal (2) G-P(sol) polarization free energy of solvation -51.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds