Wall clock time and date at job start Mon Mar 30 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29507 * 1 3 3 Si 1.86800 * 119.99652 * 2 1 4 4 H 1.48508 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47222 * 300.00060 * 3 2 1 6 6 H 1.48499 * 109.47120 * 60.00833 * 3 2 1 7 7 C 1.46538 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99875 * 171.65035 * 7 2 1 9 9 C 1.40182 * 120.00010 * 351.65200 * 7 2 1 10 10 C 1.41269 * 120.23352 * 325.06903 * 9 7 2 11 11 C 1.37959 * 119.52457 * 179.70426 * 10 9 7 12 12 N 1.39720 * 119.99225 * 180.26998 * 11 10 9 13 13 C 1.39784 * 120.01003 * 0.54855 * 11 10 9 14 14 Cl 1.73600 * 119.75912 * 179.71994 * 13 11 10 15 15 C 1.38851 * 120.47988 * 359.44739 * 13 11 10 16 16 C 1.36411 * 120.47679 * 0.27315 * 15 13 11 17 17 N 1.48023 * 120.00947 * 179.97438 * 16 15 13 18 18 O 1.31703 * 120.00159 * 353.82915 * 17 16 15 19 19 O 1.31704 * 119.99942 * 173.82580 * 17 16 15 20 20 H 0.97001 * 120.00164 * 359.97438 * 1 2 3 21 21 H 1.07991 * 120.23660 * 359.97438 * 10 9 7 22 22 H 0.97001 * 119.99249 * 180.27884 * 12 11 10 23 23 H 0.96998 * 119.99855 * 0.27881 * 12 11 10 24 24 H 1.07995 * 119.75937 * 180.25091 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2290 1.6178 0.0000 4 1 3.6891 1.3465 -0.0006 5 1 1.8702 2.3965 -1.2125 6 1 1.8703 2.3964 1.2126 7 6 2.0278 -1.2690 -0.0006 8 1 3.0992 -1.2739 -0.1364 9 6 1.3381 -2.4767 0.1751 10 6 0.2139 -2.5362 1.0287 11 6 -0.4577 -3.7309 1.1861 12 7 -1.5741 -3.7995 2.0235 13 6 -0.0179 -4.8742 0.5126 14 17 -0.8636 -6.3759 0.7212 15 6 1.0869 -4.8161 -0.3263 16 6 1.7623 -3.6438 -0.5009 17 7 2.9391 -3.5938 -1.3973 18 8 3.4082 -4.7028 -1.9308 19 8 3.5172 -2.4403 -1.6615 20 1 -0.4850 0.8400 0.0004 21 1 -0.1199 -1.6517 1.5507 22 1 -2.0439 -4.6405 2.1373 23 1 -1.8792 -3.0062 2.4908 24 1 1.4142 -5.7056 -0.8441 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716923.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:37 Heat of formation + Delta-G solvation = -0.040690 kcal Electronic energy + Delta-G solvation = -14924.205312 eV Core-core repulsion = 12059.047597 eV Total energy + Delta-G solvation = -2865.157715 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52700 -38.64394 -37.35540 -36.22194 -35.13730 -34.57816 -32.05284 -30.24823 -27.92422 -25.87656 -23.62728 -22.32097 -20.07811 -18.69923 -18.60808 -17.78193 -17.32151 -16.81702 -16.23147 -15.62200 -15.09672 -14.66561 -14.52109 -14.32485 -13.73105 -13.12160 -13.03953 -12.57028 -12.43126 -11.98765 -11.88764 -11.76378 -11.53006 -11.29096 -11.23640 -11.02001 -9.76253 -9.26861 -8.65307 -6.90929 -1.01029 0.52009 0.93334 0.99307 1.35796 1.42968 1.44646 1.54151 2.12975 2.26237 3.00307 3.04726 3.88129 4.31363 4.41079 4.60037 4.77914 4.86381 5.09894 5.34914 5.48502 5.65544 5.98719 6.19066 6.24454 6.58969 6.70355 7.05313 7.65877 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.009810 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.986941 B = 2853.526017 C = 3960.045944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.236 1.236 7 C -0.327 4.327 8 H 0.109 0.891 9 C 0.088 3.912 10 C -0.213 4.213 11 C 0.248 3.752 12 N -0.853 5.853 13 C -0.145 4.145 14 Cl -0.060 7.060 15 C -0.010 4.010 16 C -0.112 4.112 17 N 0.039 4.961 18 O -0.408 6.408 19 O -0.329 6.329 20 H 0.323 0.677 21 H 0.144 0.856 22 H 0.404 0.596 23 H 0.411 0.589 24 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 2.279 7.799 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.185 1.185 5 H -0.180 1.180 6 H -0.159 1.159 7 C -0.356 4.356 8 H 0.127 0.873 9 C 0.082 3.918 10 C -0.240 4.240 11 C 0.139 3.861 12 N -0.394 5.394 13 C -0.178 4.178 14 Cl -0.032 7.032 15 C -0.030 4.030 16 C -0.220 4.220 17 N 0.439 4.561 18 O -0.539 6.539 19 O -0.477 6.477 20 H 0.137 0.863 21 H 0.162 0.838 22 H 0.234 0.766 23 H 0.241 0.759 24 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.802 2.027 7.800 11.934 hybrid contribution 0.459 0.047 -0.477 0.663 sum -8.343 2.074 7.324 11.294 Atomic orbital electron populations 1.69007 1.09788 1.34585 1.20228 1.28629 0.95808 1.04766 0.90892 0.84883 0.79459 0.73538 0.80581 1.18522 1.18008 1.15865 1.22508 0.97413 0.90247 1.25384 0.87298 1.17308 0.93208 0.90529 0.90775 1.20494 1.00611 0.96351 1.06539 1.17306 0.88045 0.91283 0.89438 1.42337 1.30199 1.15614 1.51245 1.19961 1.00569 0.87707 1.09544 1.98269 1.76786 1.31454 1.96690 1.19888 0.92215 0.96112 0.94827 1.20165 0.95076 0.99142 1.07583 1.49810 1.03219 1.00680 1.02405 1.96020 1.73552 1.20118 1.64183 1.95992 1.64282 1.13123 1.74285 0.86304 0.83821 0.76569 0.75863 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -27.39 11.31 23.21 0.26 -27.13 14 2 C 0.03 1.20 5.42 87.20 0.47 1.67 14 3 Si 1.00 30.48 29.65 68.60 2.03 32.52 14 4 H -0.26 -8.76 7.11 99.48 0.71 -8.05 14 5 H -0.26 -7.57 7.11 99.48 0.71 -6.87 14 6 H -0.24 -6.16 7.11 99.48 0.71 -5.45 14 7 C -0.33 -15.69 7.85 24.91 0.20 -15.50 14 8 H 0.11 5.65 5.87 -2.91 -0.02 5.63 14 9 C 0.09 4.27 5.52 -21.29 -0.12 4.15 14 10 C -0.21 -8.72 8.53 22.95 0.20 -8.53 14 11 C 0.25 8.91 6.74 38.19 0.26 9.17 14 12 N -0.85 -22.07 9.04 -51.38 -0.46 -22.53 14 13 C -0.15 -5.53 6.38 22.79 0.15 -5.39 14 14 Cl -0.06 -1.83 27.57 -2.72 -0.07 -1.91 14 15 C -0.01 -0.44 9.28 21.99 0.20 -0.23 14 16 C -0.11 -5.84 6.90 36.72 0.25 -5.58 14 17 N 0.04 2.27 4.99 -45.63 -0.23 2.04 14 18 O -0.41 -24.77 19.13 3.51 0.07 -24.70 14 19 O -0.33 -19.86 16.24 3.51 0.06 -19.81 14 20 H 0.32 10.23 8.27 -92.71 -0.77 9.46 14 21 H 0.14 5.53 6.68 -2.92 -0.02 5.51 14 22 H 0.40 9.04 7.49 -92.71 -0.69 8.35 14 23 H 0.41 8.74 8.84 -92.71 -0.82 7.92 14 24 H 0.13 5.88 7.54 -2.91 -0.02 5.86 14 Total: -1.00 -62.44 240.55 3.04 -59.40 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.22 Total: 22.36 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 1.61 Total: -20.24 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.43 Total: -47.62 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: 0.12 Total: -44.51 kcal Atomic # 14 Polarization: 30.48 SS G_CDS: 2.03 Total: 32.52 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.07 Total: -1.91 kcal Total: -62.44 3.04 -59.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716923.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.356 kcal (2) G-P(sol) polarization free energy of solvation -62.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds