Wall clock time and date at job start Mon Mar 30 2020 03:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46841 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46864 * 179.97438 * 6 5 4 8 8 H 1.08009 * 120.00224 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00146 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99729 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00167 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47240 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47359 * 119.99735 * 11 9 7 14 14 H 1.48498 * 109.46962 * 239.99528 * 11 9 7 15 15 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 16 16 C 1.52997 * 109.47053 * 66.04702 * 15 2 1 17 17 H 1.09001 * 109.47321 * 305.00109 * 16 15 2 18 18 O 1.42901 * 109.47314 * 64.99816 * 16 15 2 19 19 C 1.53005 * 109.47055 * 184.99985 * 16 15 2 20 20 C 1.53001 * 117.49705 * 248.74629 * 19 16 15 21 21 C 1.53001 * 117.49885 * 180.08857 * 19 16 15 22 22 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 23 23 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 25 25 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 26 26 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 27 27 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 28 28 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 29 29 H 1.09001 * 109.46899 * 299.99594 * 5 4 3 30 30 H 1.08991 * 109.47614 * 59.99853 * 5 4 3 31 31 H 1.09001 * 109.46927 * 299.99436 * 6 5 4 32 32 H 1.08991 * 109.47228 * 60.00047 * 6 5 4 33 33 H 0.96997 * 120.00112 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.46783 * 186.04686 * 15 2 1 35 35 H 1.09002 * 109.46955 * 306.04307 * 15 2 1 36 36 H 0.96704 * 113.99350 * 59.99870 * 18 16 15 37 37 H 1.09003 * 115.54833 * 34.41759 * 19 16 15 38 38 H 1.08994 * 117.49803 * 0.02562 * 20 19 16 39 39 H 1.09003 * 117.49767 * 145.02075 * 20 19 16 40 40 H 1.09001 * 117.49798 * 214.98138 * 21 19 16 41 41 H 1.08997 * 117.49802 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 6 1.8156 4.1719 -2.6364 7 6 2.3557 5.5788 -2.6364 8 1 2.9037 5.9469 -1.7816 9 6 2.1492 6.3966 -3.7272 10 7 1.4814 5.9485 -4.7678 11 14 2.8179 8.1407 -3.7268 12 1 3.5262 8.3991 -2.4474 13 1 3.7638 8.3084 -4.8593 14 1 1.6951 9.1013 -3.8734 15 6 1.9955 -0.7660 1.1376 16 6 1.6315 -2.2426 0.9703 17 1 0.5533 -2.3389 0.8432 18 8 2.2956 -2.7696 -0.1800 19 6 2.0701 -3.0199 2.2131 20 6 3.2247 -4.0113 2.0553 21 6 1.7944 -4.5247 2.2389 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5611 1.9274 0.8310 26 1 3.0797 1.3444 0.1083 27 1 2.0658 1.5016 -2.1491 28 1 0.5471 2.0845 -1.4264 29 1 1.7462 4.0418 -0.4875 30 1 3.2645 3.4583 -1.2104 31 1 2.2493 3.6159 -3.4676 32 1 0.7314 4.1993 -2.7440 33 1 1.3358 6.5239 -5.5350 34 1 3.0798 -0.6611 1.1756 35 1 1.5612 -0.3872 2.0628 36 1 3.2602 -2.7166 -0.1359 37 1 1.9968 -2.4786 3.1564 38 1 3.6722 -4.1093 1.0663 39 1 3.9109 -4.1224 2.8950 40 1 1.5402 -4.9734 3.1992 41 1 1.3003 -4.9608 1.3708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:21 Heat of formation + Delta-G solvation = -43.148201 kcal Electronic energy + Delta-G solvation = -17103.472756 eV Core-core repulsion = 14404.494884 eV Total energy + Delta-G solvation = -2698.977872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.36844 -37.34654 -35.14912 -34.23170 -32.23781 -29.80382 -28.20422 -26.45389 -24.45437 -22.79529 -22.21277 -20.70706 -20.53170 -19.95201 -17.03006 -16.28754 -16.15708 -15.68428 -15.54322 -14.91265 -14.41190 -14.03418 -13.90470 -13.56224 -12.76349 -12.49984 -12.24107 -11.93927 -11.78516 -11.71133 -11.50281 -11.43246 -11.29298 -10.95249 -10.80400 -10.47083 -10.45669 -10.38304 -10.32632 -9.97330 -9.56947 -9.21114 -8.95344 -8.30400 -8.20688 -5.95125 -3.97194 3.33423 3.40542 3.40934 3.44886 3.79224 4.33193 4.46389 4.50152 4.58645 4.62590 4.90629 5.00071 5.16260 5.25095 5.33414 5.39480 5.40793 5.48375 5.56640 5.64833 5.67522 5.79489 5.81795 5.85307 5.93863 6.05585 6.19535 6.29023 6.56993 6.86290 7.01897 7.10487 7.13615 7.28989 7.56543 7.74768 7.90979 8.06503 8.49242 9.10649 9.66491 11.16315 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.064718 B = 0.003124 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.545294 B = 8959.900186 C = 9039.685292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.021 3.979 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.026 3.974 16 C 0.140 3.860 17 H 0.102 0.898 18 O -0.546 6.546 19 C -0.194 4.194 20 C -0.177 4.177 21 C -0.170 4.170 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.022 0.978 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.371 0.629 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -18.744 14.759 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.103 4.103 16 C 0.081 3.919 17 H 0.119 0.881 18 O -0.351 6.351 19 C -0.213 4.213 20 C -0.214 4.214 21 C -0.207 4.207 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.219 0.781 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.259 -19.024 13.967 23.602 hybrid contribution 0.589 1.578 1.000 1.958 sum 0.848 -17.446 14.966 23.002 Atomic orbital electron populations 1.22483 0.87698 1.01513 1.01165 1.61953 1.07813 1.14324 1.41614 1.22264 0.99604 0.86787 0.98411 1.21662 1.00855 0.96781 0.95813 1.21597 0.99303 0.92997 1.00816 1.19091 0.96695 0.94636 0.91194 1.21335 1.34615 0.98003 1.01763 0.92754 1.25042 0.95404 0.98479 0.95678 1.69980 1.41130 1.36318 1.06130 0.86558 0.78727 0.84900 0.77940 1.19793 1.21020 1.21062 1.22795 1.00747 0.94286 0.92425 1.21419 0.97464 0.89919 0.83131 0.88068 1.86619 1.23396 1.83944 1.41155 1.23168 1.04804 0.92595 1.00714 1.22958 0.91516 1.03605 1.03337 1.22910 0.99095 0.95638 1.03105 0.90520 0.91692 0.95988 0.95308 0.91210 0.91632 0.92568 0.93785 0.93519 0.96579 0.96749 0.93115 0.90511 0.94367 0.78113 0.87439 0.88085 0.88915 0.89030 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.13 60.07 0.55 0.79 16 2 N -0.53 -7.10 4.71 -242.91 -1.14 -8.24 16 3 C 0.06 0.83 4.96 -3.83 -0.02 0.81 16 4 C -0.11 -2.02 5.14 -26.73 -0.14 -2.16 16 5 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 11 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.03 0.27 4.58 -3.82 -0.02 0.26 16 16 C 0.14 1.35 3.29 -26.73 -0.09 1.26 16 17 H 0.10 1.04 6.26 -51.93 -0.33 0.71 16 18 O -0.55 -5.98 12.44 -35.23 -0.44 -6.42 16 19 C -0.19 -1.52 5.71 -90.62 -0.52 -2.03 16 20 C -0.18 -1.25 9.74 -26.69 -0.26 -1.51 16 21 C -0.17 -1.27 10.19 -26.69 -0.27 -1.54 16 22 H 0.08 1.03 6.47 -51.93 -0.34 0.69 16 23 H 0.06 0.72 6.21 -51.93 -0.32 0.40 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.03 0.42 8.12 -51.92 -0.42 0.00 16 26 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.01 6.55 -51.93 -0.34 0.67 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 35 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 36 H 0.37 3.08 7.56 45.56 0.34 3.42 16 37 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16 38 H 0.10 0.69 6.37 -51.93 -0.33 0.36 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -31.62 327.70 -9.12 -40.74 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.74 Total: -1.14 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -1.45 Total: -20.05 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.41 Total: -35.10 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.44 Total: -6.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.62 -9.12 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.406 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds