Wall clock time and date at job start Mon Mar 30 2020 03:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46841 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46864 * 179.97438 * 6 5 4 8 8 H 1.08009 * 120.00224 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00146 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99729 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00167 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47240 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47359 * 119.99735 * 11 9 7 14 14 H 1.48498 * 109.46962 * 239.99528 * 11 9 7 15 15 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 16 16 C 1.52997 * 109.47053 * 66.04702 * 15 2 1 17 17 H 1.09001 * 109.47321 * 305.00109 * 16 15 2 18 18 O 1.42901 * 109.47314 * 64.99816 * 16 15 2 19 19 C 1.53005 * 109.47055 * 184.99985 * 16 15 2 20 20 C 1.53001 * 117.49705 * 248.74629 * 19 16 15 21 21 C 1.53001 * 117.49885 * 180.08857 * 19 16 15 22 22 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 23 23 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 25 25 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 26 26 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 27 27 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 28 28 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 29 29 H 1.09001 * 109.46899 * 299.99594 * 5 4 3 30 30 H 1.08991 * 109.47614 * 59.99853 * 5 4 3 31 31 H 1.09001 * 109.46927 * 299.99436 * 6 5 4 32 32 H 1.08991 * 109.47228 * 60.00047 * 6 5 4 33 33 H 0.96997 * 120.00112 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.46783 * 186.04686 * 15 2 1 35 35 H 1.09002 * 109.46955 * 306.04307 * 15 2 1 36 36 H 0.96704 * 113.99350 * 59.99870 * 18 16 15 37 37 H 1.09003 * 115.54833 * 34.41759 * 19 16 15 38 38 H 1.08994 * 117.49803 * 0.02562 * 20 19 16 39 39 H 1.09003 * 117.49767 * 145.02075 * 20 19 16 40 40 H 1.09001 * 117.49798 * 214.98138 * 21 19 16 41 41 H 1.08997 * 117.49802 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 6 1.8156 4.1719 -2.6364 7 6 2.3557 5.5788 -2.6364 8 1 2.9037 5.9469 -1.7816 9 6 2.1492 6.3966 -3.7272 10 7 1.4814 5.9485 -4.7678 11 14 2.8179 8.1407 -3.7268 12 1 3.5262 8.3991 -2.4474 13 1 3.7638 8.3084 -4.8593 14 1 1.6951 9.1013 -3.8734 15 6 1.9955 -0.7660 1.1376 16 6 1.6315 -2.2426 0.9703 17 1 0.5533 -2.3389 0.8432 18 8 2.2956 -2.7696 -0.1800 19 6 2.0701 -3.0199 2.2131 20 6 3.2247 -4.0113 2.0553 21 6 1.7944 -4.5247 2.2389 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5611 1.9274 0.8310 26 1 3.0797 1.3444 0.1083 27 1 2.0658 1.5016 -2.1491 28 1 0.5471 2.0845 -1.4264 29 1 1.7462 4.0418 -0.4875 30 1 3.2645 3.4583 -1.2104 31 1 2.2493 3.6159 -3.4676 32 1 0.7314 4.1993 -2.7440 33 1 1.3358 6.5239 -5.5350 34 1 3.0798 -0.6611 1.1756 35 1 1.5612 -0.3872 2.0628 36 1 3.2602 -2.7166 -0.1359 37 1 1.9968 -2.4786 3.1564 38 1 3.6722 -4.1093 1.0663 39 1 3.9109 -4.1224 2.8950 40 1 1.5402 -4.9734 3.1992 41 1 1.3003 -4.9608 1.3708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:20 Heat of formation + Delta-G solvation = -64.201559 kcal Electronic energy + Delta-G solvation = -17104.385698 eV Core-core repulsion = 14404.494884 eV Total energy + Delta-G solvation = -2699.890814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14347 -38.36359 -36.25162 -35.68466 -34.16316 -31.10890 -29.53127 -27.72016 -26.03302 -23.70604 -23.23263 -21.90626 -21.60000 -21.31170 -18.43694 -17.74052 -17.04573 -16.74388 -16.52646 -16.47951 -15.90938 -15.32512 -14.87853 -14.48425 -14.37895 -13.81254 -13.63145 -13.45486 -13.11140 -12.84863 -12.64650 -12.61787 -12.33844 -12.29727 -12.17816 -12.08158 -11.92041 -11.39603 -11.33972 -11.29005 -11.11480 -11.00888 -10.60915 -10.56235 -9.21481 -8.20008 -6.31689 1.39447 1.40134 1.53655 2.40795 2.77083 2.93237 3.12655 3.59671 3.75089 3.96281 4.00090 4.05252 4.17061 4.20878 4.31661 4.45351 4.50977 4.56274 4.57808 4.68886 4.74727 4.81334 4.84264 4.87468 5.02954 5.04433 5.13533 5.22891 5.24377 5.28350 5.29087 5.37055 5.55494 5.77531 5.86835 6.10305 6.15429 6.25933 6.86221 6.88944 7.37722 8.92271 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.064718 B = 0.003124 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.545294 B = 8959.900186 C = 9039.685292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.067 3.933 4 C -0.103 4.103 5 C -0.096 4.096 6 C 0.023 3.977 7 C -0.543 4.543 8 H 0.061 0.939 9 C -0.005 4.005 10 N -0.936 5.936 11 Si 0.968 3.032 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.029 3.971 16 C 0.144 3.856 17 H 0.093 0.907 18 O -0.565 6.565 19 C -0.194 4.194 20 C -0.173 4.173 21 C -0.174 4.174 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.052 0.948 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.264 0.736 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.381 0.619 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 -18.673 16.525 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.060 4.060 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.014 4.014 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.202 4.202 10 N -0.576 5.576 11 Si 0.792 3.208 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.099 4.099 16 C 0.085 3.915 17 H 0.111 0.889 18 O -0.372 6.372 19 C -0.213 4.213 20 C -0.210 4.210 21 C -0.211 4.211 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.231 0.769 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.193 -18.970 15.750 24.685 hybrid contribution 0.274 1.500 0.414 1.580 sum 1.467 -17.470 16.164 23.846 Atomic orbital electron populations 1.22472 0.87394 1.02204 1.00746 1.61889 1.08282 1.13523 1.43480 1.22048 1.00175 0.87581 0.96238 1.21485 1.00184 0.94904 0.97552 1.21395 0.99781 0.94542 0.97666 1.19020 0.94646 0.94458 0.93307 1.21775 1.34933 0.99187 1.02223 0.92113 1.26050 0.95512 1.03496 0.95126 1.70117 1.42266 1.38292 1.06926 0.85360 0.78196 0.78724 0.78524 1.18452 1.20290 1.20314 1.22840 1.01093 0.94305 0.91672 1.21357 0.96972 0.89569 0.83615 0.88939 1.86589 1.24462 1.84109 1.42039 1.23075 1.05533 0.92615 1.00105 1.23040 0.91431 1.02620 1.03874 1.22951 0.99504 0.95357 1.03325 0.92175 0.90503 0.95128 0.94700 0.90382 0.92968 0.93114 0.93156 0.92912 0.99353 0.99378 0.92770 0.89814 0.93351 0.76949 0.86473 0.88069 0.87711 0.87850 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.13 127.69 1.17 1.64 16 2 N -0.55 -13.87 4.71 -922.42 -4.35 -18.21 16 3 C 0.07 1.88 4.96 86.30 0.43 2.31 16 4 C -0.10 -3.69 5.14 30.59 0.16 -3.53 16 5 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 6 C 0.02 1.26 4.97 29.85 0.15 1.40 16 7 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 10 N -0.94 -58.60 13.29 21.45 0.28 -58.31 16 11 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 C 0.03 0.55 4.58 86.30 0.40 0.95 16 16 C 0.14 2.56 3.29 30.59 0.10 2.66 16 17 H 0.09 1.79 6.26 -2.39 -0.01 1.77 16 18 O -0.56 -11.75 12.44 -148.98 -1.85 -13.61 16 19 C -0.19 -2.65 5.71 -10.79 -0.06 -2.71 16 20 C -0.17 -2.08 9.74 30.62 0.30 -1.78 16 21 C -0.17 -2.31 10.19 30.62 0.31 -2.00 16 22 H 0.06 1.62 6.47 -2.39 -0.02 1.60 16 23 H 0.08 1.63 6.21 -2.38 -0.01 1.62 16 24 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.03 0.94 8.12 -2.38 -0.02 0.92 16 26 H 0.08 2.06 7.93 -2.39 -0.02 2.04 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.85 6.55 -2.39 -0.02 1.83 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.08 1.49 7.93 -2.39 -0.02 1.47 16 35 H 0.05 0.84 8.12 -2.39 -0.02 0.83 16 36 H 0.38 5.85 7.56 -74.05 -0.56 5.29 16 37 H 0.12 1.39 8.11 -2.39 -0.02 1.37 16 38 H 0.10 1.21 6.37 -2.39 -0.02 1.19 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.61 327.70 0.33 -67.28 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.42 Total: 12.16 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 3.80 Total: -36.43 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -4.06 Total: -76.53 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.85 Total: -13.61 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.61 0.33 -67.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.076 kcal (2) G-P(sol) polarization free energy of solvation -67.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds