Wall clock time and date at job start Mon Mar 30 2020 03:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00230 * 2 1 4 4 C 1.52999 * 109.46675 * 293.94999 * 3 2 1 5 5 C 1.53001 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47058 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47185 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99812 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00469 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99564 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00147 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47109 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47163 * 120.00458 * 11 9 7 14 14 H 1.48506 * 109.47124 * 240.00293 * 11 9 7 15 15 C 1.46903 * 110.99632 * 123.95063 * 2 1 3 16 16 C 1.53008 * 109.47002 * 164.00174 * 15 2 1 17 17 H 1.08996 * 109.46927 * 58.49606 * 16 15 2 18 18 O 1.42898 * 109.47009 * 298.49425 * 16 15 2 19 19 C 1.52997 * 109.46915 * 178.49554 * 16 15 2 20 20 C 1.53007 * 117.49689 * 248.74547 * 19 16 15 21 21 C 1.53005 * 117.49825 * 180.08879 * 19 16 15 22 22 H 1.09004 * 109.46989 * 302.03009 * 1 2 3 23 23 H 1.08998 * 109.46939 * 62.02623 * 1 2 3 24 24 H 1.08994 * 109.47121 * 182.02742 * 1 2 3 25 25 H 1.08999 * 109.47043 * 53.94763 * 3 2 1 26 26 H 1.09001 * 109.46838 * 173.95375 * 3 2 1 27 27 H 1.09001 * 109.47383 * 300.00184 * 4 3 2 28 28 H 1.09001 * 109.47181 * 60.00586 * 4 3 2 29 29 H 1.08991 * 109.47351 * 300.00384 * 5 4 3 30 30 H 1.09001 * 109.46577 * 60.00301 * 5 4 3 31 31 H 1.09001 * 109.47383 * 300.00269 * 6 5 4 32 32 H 1.09001 * 109.47181 * 60.00671 * 6 5 4 33 33 H 0.96999 * 119.99647 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.47270 * 43.99981 * 15 2 1 35 35 H 1.09003 * 109.47181 * 284.00049 * 15 2 1 36 36 H 0.96698 * 113.99934 * 300.00631 * 18 16 15 37 37 H 1.08994 * 115.55391 * 34.41776 * 19 16 15 38 38 H 1.08999 * 117.49786 * 0.02562 * 20 19 16 39 39 H 1.09003 * 117.49597 * 145.02561 * 20 19 16 40 40 H 1.08996 * 117.49765 * 214.98077 * 21 19 16 41 41 H 1.09003 * 117.49535 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1794 3.4859 -1.3182 6 6 1.8160 4.1716 -2.6367 7 6 2.3561 5.5785 -2.6369 8 1 2.9041 5.9466 -1.7821 9 6 2.1515 6.3955 -3.7285 10 7 1.4846 5.9470 -4.7696 11 14 2.8216 8.1391 -3.7289 12 1 3.5295 8.3976 -2.4494 13 1 3.7689 8.3051 -4.8605 14 1 1.6996 9.1005 -3.8774 15 6 1.9954 -0.7659 1.1377 16 6 3.4728 -1.0842 0.8984 17 1 4.0282 -0.1553 0.7694 18 8 3.6031 -1.8845 -0.2782 19 6 4.0307 -1.8494 2.1001 20 6 5.0528 -1.1303 2.9829 21 6 5.5038 -2.2603 2.0540 22 1 -0.3633 0.5451 0.8713 23 1 -0.3633 0.4820 -0.9076 24 1 -0.3633 -1.0270 0.0364 25 1 1.5611 1.9274 0.8308 26 1 3.0798 1.3443 0.1082 27 1 2.0659 1.5013 -2.1492 28 1 0.5473 2.0845 -1.4266 29 1 1.7447 4.0416 -0.4874 30 1 3.2636 3.4592 -1.2097 31 1 2.2510 3.6157 -3.4673 32 1 0.7318 4.1983 -2.7457 33 1 1.3404 6.5219 -5.5375 34 1 1.4354 -1.6955 1.2401 35 1 1.8934 -0.1780 2.0499 36 1 3.1329 -2.7283 -0.2340 37 1 3.3335 -2.5297 2.5892 38 1 5.3274 -0.1120 2.7077 39 1 5.0283 -1.3379 4.0527 40 1 5.7757 -3.2108 2.5130 41 1 6.0753 -1.9858 1.1673 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:31 Heat of formation + Delta-G solvation = -44.827043 kcal Electronic energy + Delta-G solvation = -17266.556417 eV Core-core repulsion = 14567.505744 eV Total energy + Delta-G solvation = -2699.050672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.14040 -37.22674 -35.41688 -34.21671 -32.17492 -29.65169 -28.52948 -25.80011 -24.49244 -22.62937 -22.36698 -21.06141 -20.44663 -19.94781 -16.75643 -16.26133 -16.04955 -15.67412 -15.42152 -14.43959 -14.40809 -14.26062 -14.03228 -13.52137 -12.86239 -12.48077 -12.20281 -11.91274 -11.79505 -11.76785 -11.62669 -11.30553 -11.05681 -10.92670 -10.76469 -10.44883 -10.43355 -10.41223 -10.26086 -9.91241 -9.54882 -9.20605 -8.94377 -8.29019 -8.19914 -5.93818 -3.95789 3.34467 3.41564 3.43411 3.46028 3.84604 4.39100 4.48313 4.52009 4.63738 4.79896 4.91401 5.04644 5.15667 5.27535 5.39611 5.41484 5.42918 5.48720 5.58118 5.63103 5.73469 5.74224 5.87207 5.92228 5.99107 6.04809 6.21349 6.32321 6.58983 6.88523 7.03651 7.11219 7.15502 7.30090 7.68837 7.76228 7.92685 8.07920 8.50759 9.12006 9.67838 11.17618 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031004 B = 0.003794 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.905225 B = 7377.514270 C = 7864.302836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.533 5.533 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.021 3.979 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.026 3.974 16 C 0.142 3.858 17 H 0.098 0.902 18 O -0.541 6.541 19 C -0.195 4.195 20 C -0.175 4.175 21 C -0.165 4.165 22 H 0.021 0.979 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.369 0.631 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 -17.364 14.992 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.102 4.102 16 C 0.082 3.918 17 H 0.116 0.884 18 O -0.345 6.345 19 C -0.214 4.214 20 C -0.212 4.212 21 C -0.202 4.202 22 H 0.040 0.960 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.215 0.785 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.687 -17.027 14.195 22.330 hybrid contribution -0.383 0.938 0.991 1.417 sum 2.303 -16.089 15.186 22.244 Atomic orbital electron populations 1.22423 0.87511 1.01199 1.01316 1.61950 1.07501 1.14628 1.41621 1.22299 0.99762 0.86737 0.98391 1.21651 1.00744 0.96781 0.95880 1.21598 0.99331 0.93009 1.00794 1.19091 0.96665 0.94640 0.91207 1.21337 1.34601 0.98033 1.01721 0.92751 1.25038 0.95414 0.98469 0.95672 1.69985 1.41202 1.36309 1.06065 0.86559 0.78727 0.84900 0.77951 1.19786 1.21023 1.21069 1.22786 0.96351 0.98561 0.92542 1.21457 0.94063 0.93405 0.82886 0.88388 1.86659 1.75768 1.33868 1.38184 1.23089 0.93187 1.04300 1.00792 1.22974 1.03267 0.97872 0.97137 1.22859 0.96237 0.99070 1.02053 0.96012 0.90529 0.92019 0.95323 0.91158 0.91564 0.92644 0.93802 0.93529 0.96560 0.96765 0.93138 0.90928 0.94126 0.78528 0.87875 0.88494 0.88793 0.88918 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.27 60.07 0.56 0.84 16 2 N -0.53 -7.12 4.61 -242.91 -1.12 -8.24 16 3 C 0.06 0.84 4.81 -3.82 -0.02 0.82 16 4 C -0.11 -2.05 5.14 -26.73 -0.14 -2.18 16 5 C -0.11 -2.35 5.15 -26.73 -0.14 -2.48 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 11 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.03 0.28 4.61 -3.82 -0.02 0.26 16 16 C 0.14 1.51 3.18 -26.73 -0.09 1.42 16 17 H 0.10 1.21 6.31 -51.93 -0.33 0.88 16 18 O -0.54 -6.43 13.14 -35.23 -0.46 -6.89 16 19 C -0.19 -1.65 5.36 -90.61 -0.49 -2.13 16 20 C -0.18 -1.43 10.18 -26.69 -0.27 -1.70 16 21 C -0.17 -1.37 10.16 -26.69 -0.27 -1.64 16 22 H 0.02 0.25 8.13 -51.93 -0.42 -0.17 16 23 H 0.08 1.00 6.57 -51.93 -0.34 0.66 16 24 H 0.06 0.63 7.95 -51.93 -0.41 0.21 16 25 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 26 H 0.07 1.06 6.38 -51.93 -0.33 0.73 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.05 1.00 6.60 -51.93 -0.34 0.66 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.07 0.65 7.87 -51.93 -0.41 0.25 16 35 H 0.04 0.43 8.05 -51.93 -0.42 0.01 16 36 H 0.37 3.07 9.05 45.56 0.41 3.48 16 37 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 38 H 0.10 0.82 8.05 -51.93 -0.42 0.41 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -32.00 331.66 -9.06 -41.06 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.78 Total: -0.75 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.42 Total: -20.36 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.38 Total: -35.19 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.46 Total: -6.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.00 -9.06 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.764 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds