Wall clock time and date at job start Mon Mar 30 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00230 * 2 1 4 4 C 1.52999 * 109.46675 * 293.94999 * 3 2 1 5 5 C 1.53001 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47058 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47185 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99812 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00469 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99564 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00147 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47109 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47163 * 120.00458 * 11 9 7 14 14 H 1.48506 * 109.47124 * 240.00293 * 11 9 7 15 15 C 1.46903 * 110.99632 * 123.95063 * 2 1 3 16 16 C 1.53008 * 109.47002 * 164.00174 * 15 2 1 17 17 H 1.08996 * 109.46927 * 58.49606 * 16 15 2 18 18 O 1.42898 * 109.47009 * 298.49425 * 16 15 2 19 19 C 1.52997 * 109.46915 * 178.49554 * 16 15 2 20 20 C 1.53007 * 117.49689 * 248.74547 * 19 16 15 21 21 C 1.53005 * 117.49825 * 180.08879 * 19 16 15 22 22 H 1.09004 * 109.46989 * 302.03009 * 1 2 3 23 23 H 1.08998 * 109.46939 * 62.02623 * 1 2 3 24 24 H 1.08994 * 109.47121 * 182.02742 * 1 2 3 25 25 H 1.08999 * 109.47043 * 53.94763 * 3 2 1 26 26 H 1.09001 * 109.46838 * 173.95375 * 3 2 1 27 27 H 1.09001 * 109.47383 * 300.00184 * 4 3 2 28 28 H 1.09001 * 109.47181 * 60.00586 * 4 3 2 29 29 H 1.08991 * 109.47351 * 300.00384 * 5 4 3 30 30 H 1.09001 * 109.46577 * 60.00301 * 5 4 3 31 31 H 1.09001 * 109.47383 * 300.00269 * 6 5 4 32 32 H 1.09001 * 109.47181 * 60.00671 * 6 5 4 33 33 H 0.96999 * 119.99647 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.47270 * 43.99981 * 15 2 1 35 35 H 1.09003 * 109.47181 * 284.00049 * 15 2 1 36 36 H 0.96698 * 113.99934 * 300.00631 * 18 16 15 37 37 H 1.08994 * 115.55391 * 34.41776 * 19 16 15 38 38 H 1.08999 * 117.49786 * 0.02562 * 20 19 16 39 39 H 1.09003 * 117.49597 * 145.02561 * 20 19 16 40 40 H 1.08996 * 117.49765 * 214.98077 * 21 19 16 41 41 H 1.09003 * 117.49535 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1794 3.4859 -1.3182 6 6 1.8160 4.1716 -2.6367 7 6 2.3561 5.5785 -2.6369 8 1 2.9041 5.9466 -1.7821 9 6 2.1515 6.3955 -3.7285 10 7 1.4846 5.9470 -4.7696 11 14 2.8216 8.1391 -3.7289 12 1 3.5295 8.3976 -2.4494 13 1 3.7689 8.3051 -4.8605 14 1 1.6996 9.1005 -3.8774 15 6 1.9954 -0.7659 1.1377 16 6 3.4728 -1.0842 0.8984 17 1 4.0282 -0.1553 0.7694 18 8 3.6031 -1.8845 -0.2782 19 6 4.0307 -1.8494 2.1001 20 6 5.0528 -1.1303 2.9829 21 6 5.5038 -2.2603 2.0540 22 1 -0.3633 0.5451 0.8713 23 1 -0.3633 0.4820 -0.9076 24 1 -0.3633 -1.0270 0.0364 25 1 1.5611 1.9274 0.8308 26 1 3.0798 1.3443 0.1082 27 1 2.0659 1.5013 -2.1492 28 1 0.5473 2.0845 -1.4266 29 1 1.7447 4.0416 -0.4874 30 1 3.2636 3.4592 -1.2097 31 1 2.2510 3.6157 -3.4673 32 1 0.7318 4.1983 -2.7457 33 1 1.3404 6.5219 -5.5375 34 1 1.4354 -1.6955 1.2401 35 1 1.8934 -0.1780 2.0499 36 1 3.1329 -2.7283 -0.2340 37 1 3.3335 -2.5297 2.5892 38 1 5.3274 -0.1120 2.7077 39 1 5.0283 -1.3379 4.0527 40 1 5.7757 -3.2108 2.5130 41 1 6.0753 -1.9858 1.1673 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:23 Heat of formation + Delta-G solvation = -66.543123 kcal Electronic energy + Delta-G solvation = -17267.498096 eV Core-core repulsion = 14567.505744 eV Total energy + Delta-G solvation = -2699.992352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.99372 -38.23289 -36.38020 -35.92370 -34.14314 -30.88294 -29.95390 -27.26643 -25.83206 -23.89077 -23.21553 -21.90689 -21.78857 -21.49107 -18.44587 -17.56585 -16.92480 -16.79006 -16.61384 -16.30411 -15.72301 -15.17592 -15.03472 -14.59869 -14.41600 -13.84590 -13.68773 -13.49321 -13.12197 -12.84093 -12.70989 -12.63937 -12.41096 -12.24706 -12.24293 -12.09521 -11.73852 -11.42660 -11.32397 -11.28390 -11.09239 -10.99713 -10.70503 -10.56516 -9.21099 -8.20249 -6.32024 1.39100 1.40034 1.53553 2.40664 2.73763 2.95490 3.12297 3.60875 3.74023 3.94892 4.00446 4.11822 4.13966 4.21674 4.33016 4.40466 4.52437 4.55734 4.59676 4.66150 4.73862 4.79547 4.83720 4.89662 4.97505 5.04170 5.07778 5.21950 5.24722 5.26461 5.30528 5.36248 5.54338 5.76344 5.85865 6.09892 6.16668 6.25558 6.85448 7.00275 7.37326 8.92010 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031004 B = 0.003794 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.905225 B = 7377.514270 C = 7864.302836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.066 3.934 4 C -0.102 4.102 5 C -0.097 4.097 6 C 0.024 3.976 7 C -0.545 4.545 8 H 0.060 0.940 9 C -0.004 4.004 10 N -0.935 5.935 11 Si 0.968 3.032 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.030 3.970 16 C 0.143 3.857 17 H 0.075 0.925 18 O -0.564 6.564 19 C -0.190 4.190 20 C -0.176 4.176 21 C -0.168 4.168 22 H 0.028 0.972 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.048 0.952 31 H -0.013 1.013 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.383 0.617 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 -17.691 16.834 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.062 4.062 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.013 4.013 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.792 3.208 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.098 4.098 16 C 0.083 3.917 17 H 0.093 0.907 18 O -0.370 6.370 19 C -0.209 4.209 20 C -0.213 4.213 21 C -0.205 4.205 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.232 0.768 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.929 -17.377 16.053 23.838 hybrid contribution -0.478 0.989 0.374 1.160 sum 2.451 -16.389 16.427 23.333 Atomic orbital electron populations 1.22444 0.86710 1.02558 1.00732 1.61881 1.08356 1.13462 1.43492 1.22057 0.99868 0.87935 0.96308 1.21467 1.00277 0.94811 0.97424 1.21404 0.99597 0.94647 0.97823 1.19011 0.94722 0.94444 0.93158 1.21768 1.35030 0.99214 1.02234 0.92181 1.26046 0.95490 1.03504 0.95084 1.70121 1.42255 1.38292 1.06838 0.85354 0.78218 0.78696 0.78503 1.18513 1.20295 1.20190 1.22827 0.96314 0.99064 0.91546 1.21384 0.94017 0.92832 0.83449 0.90732 1.86618 1.76351 1.34954 1.39095 1.23015 0.93472 1.04384 0.99980 1.23046 1.02906 0.97396 0.97982 1.22883 0.96045 0.99903 1.01696 0.95385 0.92220 0.89799 0.94651 0.91243 0.93205 0.92768 0.93042 0.93301 0.99435 0.99190 0.92754 0.88661 0.93515 0.76841 0.85959 0.89407 0.87188 0.87325 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.27 127.69 1.18 1.71 16 2 N -0.55 -13.89 4.61 -922.42 -4.25 -18.15 16 3 C 0.07 1.95 4.81 86.30 0.41 2.36 16 4 C -0.10 -3.75 5.14 30.59 0.16 -3.59 16 5 C -0.10 -4.21 5.15 30.59 0.16 -4.05 16 6 C 0.02 1.33 4.97 29.85 0.15 1.47 16 7 C -0.54 -32.34 9.11 25.60 0.23 -32.11 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 10 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 11 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 12 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 C 0.03 0.58 4.61 86.31 0.40 0.98 16 16 C 0.14 2.86 3.18 30.60 0.10 2.95 16 17 H 0.07 1.83 6.31 -2.39 -0.02 1.81 16 18 O -0.56 -12.88 13.14 -148.98 -1.96 -14.83 16 19 C -0.19 -2.81 5.36 -10.79 -0.06 -2.87 16 20 C -0.18 -2.57 10.18 30.62 0.31 -2.26 16 21 C -0.17 -2.54 10.16 30.62 0.31 -2.23 16 22 H 0.03 0.59 8.13 -2.38 -0.02 0.57 16 23 H 0.06 1.53 6.57 -2.39 -0.02 1.51 16 24 H 0.08 1.49 7.95 -2.39 -0.02 1.47 16 25 H 0.04 1.00 8.11 -2.39 -0.02 0.98 16 26 H 0.07 2.06 6.38 -2.39 -0.02 2.04 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.99 6.60 -2.39 -0.02 1.97 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.10 1.39 7.87 -2.39 -0.02 1.38 16 35 H 0.05 0.86 8.05 -2.39 -0.02 0.84 16 36 H 0.38 5.78 9.05 -74.06 -0.67 5.11 16 37 H 0.12 1.38 8.11 -2.39 -0.02 1.36 16 38 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -69.10 331.66 0.22 -68.88 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.31 Total: 12.54 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 3.82 Total: -37.40 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -3.97 Total: -76.64 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.96 Total: -14.83 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.10 0.22 -68.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.336 kcal (2) G-P(sol) polarization free energy of solvation -69.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds