Wall clock time and date at job start Mon Mar 30 2020 04:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 109.47056 * 2 1 4 4 N 1.46899 * 109.47599 * 119.99780 * 2 1 3 5 5 C 1.46901 * 110.99961 * 275.00421 * 4 2 1 6 6 C 1.50708 * 109.46866 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99897 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00190 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99922 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46822 * 90.01007 * 10 8 6 12 12 H 1.48500 * 109.46811 * 210.00166 * 10 8 6 13 13 H 1.48496 * 109.47391 * 330.00366 * 10 8 6 14 14 C 1.53002 * 109.47309 * 240.00289 * 2 1 3 15 15 H 1.08999 * 109.49018 * 175.36573 * 14 2 1 16 16 C 1.53047 * 109.48670 * 295.40463 * 14 2 1 17 17 N 1.46958 * 109.36801 * 178.36838 * 16 14 2 18 18 C 1.46896 * 111.00006 * 176.81499 * 17 16 14 19 19 C 1.46958 * 110.87725 * 300.68008 * 17 16 14 20 20 C 1.53055 * 109.36330 * 59.32246 * 19 17 16 21 21 N 1.46954 * 109.48854 * 55.31661 * 14 2 1 22 22 C 1.46900 * 111.00009 * 56.85113 * 21 14 2 23 23 H 1.09000 * 109.47567 * 60.00409 * 1 2 3 24 24 H 1.09008 * 109.47056 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47449 * 300.00117 * 1 2 3 26 26 H 1.00904 * 110.99572 * 38.95475 * 4 2 1 27 27 H 1.08995 * 109.47174 * 299.99273 * 5 4 2 28 28 H 1.08999 * 109.47200 * 59.99856 * 5 4 2 29 29 H 0.97000 * 120.00886 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.49259 * 298.33681 * 16 14 2 31 31 H 1.09008 * 109.49122 * 58.40391 * 16 14 2 32 32 H 1.08994 * 109.47701 * 60.00527 * 18 17 16 33 33 H 1.09007 * 109.46641 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47351 * 299.99812 * 18 17 16 35 35 H 1.09003 * 109.48471 * 179.28356 * 19 17 16 36 36 H 1.08993 * 109.49202 * 299.35363 * 19 17 16 37 37 H 1.08994 * 109.49389 * 61.55894 * 20 19 17 38 38 H 1.09001 * 109.48896 * 181.61232 * 20 19 17 39 39 H 1.08999 * 109.47087 * 53.80189 * 22 21 14 40 40 H 1.08997 * 109.47190 * 173.80334 * 22 21 14 41 41 H 1.09002 * 109.46816 * 293.80657 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2227 2.3468 6 6 2.5874 -0.5217 3.5560 7 1 2.8364 -1.5699 3.4798 8 6 2.7306 0.1351 4.7598 9 7 3.1717 -0.5143 5.8148 10 14 2.2992 1.9478 4.8917 11 1 0.8697 2.0903 5.2676 12 1 3.1496 2.5847 5.9293 13 1 2.5354 2.6094 3.5835 14 6 2.0400 -0.7212 -1.2493 15 1 3.1268 -0.6500 -1.2920 16 6 1.6266 -2.1937 -1.1933 17 7 2.0839 -2.8750 -2.4125 18 6 1.7717 -4.3095 -2.3625 19 6 1.5036 -2.2512 -3.6099 20 6 1.9171 -0.7786 -3.6660 21 7 1.4602 -0.0971 -2.4467 22 6 1.7728 1.3374 -2.4965 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.4496 -1.4979 1.4100 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6163 2.5525 29 1 3.2728 -0.0523 6.6617 30 1 2.0795 -2.6657 -0.3213 31 1 0.5411 -2.2643 -1.1227 32 1 0.6940 -4.4440 -2.2704 33 1 2.1213 -4.7895 -3.2766 34 1 2.2687 -4.7598 -1.5032 35 1 1.8670 -2.7651 -4.4999 36 1 0.4169 -2.3224 -3.5667 37 1 3.0025 -0.7081 -3.7365 38 1 1.4645 -0.3067 -4.5380 39 1 2.8502 1.4777 -2.4095 40 1 1.4277 1.7518 -3.4437 41 1 1.2724 1.8471 -1.6731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:12 Heat of formation + Delta-G solvation = 18.500736 kcal Electronic energy + Delta-G solvation = -18479.916795 eV Core-core repulsion = 15815.904973 eV Total energy + Delta-G solvation = -2664.011822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.69318 -36.42805 -35.14238 -32.77885 -31.03281 -29.31447 -28.57050 -26.38540 -25.33156 -24.20589 -22.93810 -21.23960 -20.79863 -18.82484 -16.80301 -15.98657 -15.62553 -15.24341 -14.82324 -14.59210 -14.37979 -14.01114 -13.73579 -13.48698 -12.87338 -12.82939 -12.49257 -12.37895 -12.03667 -11.78877 -11.67048 -11.56162 -11.52658 -11.26580 -10.84868 -10.76763 -10.64127 -10.37025 -9.99416 -9.73882 -9.26485 -8.59562 -8.36618 -8.18934 -7.44389 -6.04977 -4.02638 3.28655 3.36291 3.38923 3.91621 3.97162 4.42660 4.84123 5.01735 5.04386 5.17997 5.26015 5.28440 5.34550 5.40912 5.52636 5.53135 5.57279 5.59376 5.69166 5.76213 5.85336 5.87306 5.90483 5.93961 6.14421 6.20266 6.35113 6.39065 6.55641 6.80607 6.97672 7.00999 7.04308 7.19799 7.24145 7.62911 7.91588 8.34669 8.66241 9.03303 9.57179 11.08403 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031814 B = 0.005877 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.903454 B = 4763.415599 C = 5364.794431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.071 0.929 4 N -0.674 5.674 5 C 0.166 3.834 6 C -0.515 4.515 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.877 3.123 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.101 3.899 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.546 5.546 18 C 0.027 3.973 19 C 0.057 3.943 20 C 0.058 3.942 21 N -0.540 5.540 22 C 0.023 3.977 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.335 0.665 27 H 0.025 0.975 28 H -0.020 1.020 29 H 0.263 0.737 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -0.809 -19.129 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.025 4.025 3 H 0.090 0.910 4 N -0.304 5.304 5 C 0.039 3.961 6 C -0.553 4.553 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.705 3.295 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.007 4.007 15 H 0.073 0.927 16 C -0.063 4.063 17 N -0.271 5.271 18 C -0.122 4.122 19 C -0.071 4.071 20 C -0.070 4.070 21 N -0.265 5.265 22 C -0.125 4.125 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.153 0.847 27 H 0.043 0.957 28 H -0.002 1.002 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.377 -0.706 -19.085 19.593 hybrid contribution -1.146 1.090 0.443 1.643 sum -5.523 0.384 -18.642 19.447 Atomic orbital electron populations 1.22420 0.97437 1.01727 1.01528 1.21510 0.92807 0.97501 0.90685 0.91032 1.60516 1.55845 1.10118 1.03939 1.20008 0.94334 0.92837 0.88967 1.21067 1.43567 0.98827 0.91835 0.90301 1.24898 0.94838 0.97924 0.95651 1.69895 1.46686 1.36526 1.00870 0.86829 0.78522 0.86068 0.78095 1.20372 1.21183 1.19211 1.21636 0.97327 0.92905 0.88876 0.92723 1.22249 0.98194 0.93542 0.92359 1.62140 1.59265 1.02848 1.02823 1.22325 0.98758 0.88470 1.02614 1.22143 0.97443 0.94226 0.93323 1.22125 0.98547 0.93653 0.92715 1.62157 1.59360 1.02768 1.02255 1.22382 0.99197 0.88707 1.02262 0.91771 0.92933 0.93287 0.84681 0.95749 1.00195 0.92674 0.88938 0.94255 0.95826 0.91740 0.91052 0.90748 0.94310 0.94160 0.90656 0.95455 0.91904 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 8.58 37.15 0.32 -2.33 16 2 C 0.09 1.46 1.90 -67.72 -0.13 1.33 16 3 H 0.07 1.26 6.43 -51.92 -0.33 0.93 16 4 N -0.67 -13.79 5.62 -107.99 -0.61 -14.39 16 5 C 0.17 4.04 4.31 -4.97 -0.02 4.01 16 6 C -0.51 -14.76 9.87 -34.44 -0.34 -15.10 16 7 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 10 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 14 C 0.10 1.54 1.99 -67.66 -0.13 1.41 16 15 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.06 0.94 4.28 -3.77 -0.02 0.92 16 17 N -0.55 -7.15 4.97 -242.75 -1.21 -8.35 16 18 C 0.03 0.29 9.60 60.06 0.58 0.87 16 19 C 0.06 0.64 5.62 -3.76 -0.02 0.62 16 20 C 0.06 0.66 5.61 -3.76 -0.02 0.64 16 21 N -0.54 -7.03 3.88 -234.73 -0.91 -7.94 16 22 C 0.02 0.27 8.78 60.06 0.53 0.79 16 23 H 0.06 0.91 6.88 -51.93 -0.36 0.56 16 24 H 0.05 0.79 6.51 -51.92 -0.34 0.45 16 25 H 0.05 0.80 7.45 -51.93 -0.39 0.42 16 26 H 0.34 6.69 7.72 -39.29 -0.30 6.39 16 27 H 0.02 0.61 7.11 -51.93 -0.37 0.24 16 28 H -0.02 -0.47 6.86 -51.93 -0.36 -0.83 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.09 1.48 7.23 -51.93 -0.38 1.10 16 31 H 0.04 0.58 6.48 -51.92 -0.34 0.24 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.60 8.13 -51.92 -0.42 0.18 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 40 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 41 H 0.07 0.88 6.21 -51.93 -0.32 0.56 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -30.29 309.10 -8.60 -38.90 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.29 Total: 2.04 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 0.64 Total: -4.92 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -1.95 Total: -57.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.29 -8.60 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.398 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds