Wall clock time and date at job start Mon Mar 30 2020 04:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 109.47056 * 2 1 4 4 N 1.46899 * 109.47599 * 119.99780 * 2 1 3 5 5 C 1.46901 * 110.99961 * 275.00421 * 4 2 1 6 6 C 1.50708 * 109.46866 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99897 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00190 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99922 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46822 * 90.01007 * 10 8 6 12 12 H 1.48500 * 109.46811 * 210.00166 * 10 8 6 13 13 H 1.48496 * 109.47391 * 330.00366 * 10 8 6 14 14 C 1.53002 * 109.47309 * 240.00289 * 2 1 3 15 15 H 1.08999 * 109.49018 * 175.36573 * 14 2 1 16 16 C 1.53047 * 109.48670 * 295.40463 * 14 2 1 17 17 N 1.46958 * 109.36801 * 178.36838 * 16 14 2 18 18 C 1.46896 * 111.00006 * 176.81499 * 17 16 14 19 19 C 1.46958 * 110.87725 * 300.68008 * 17 16 14 20 20 C 1.53055 * 109.36330 * 59.32246 * 19 17 16 21 21 N 1.46954 * 109.48854 * 55.31661 * 14 2 1 22 22 C 1.46900 * 111.00009 * 56.85113 * 21 14 2 23 23 H 1.09000 * 109.47567 * 60.00409 * 1 2 3 24 24 H 1.09008 * 109.47056 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47449 * 300.00117 * 1 2 3 26 26 H 1.00904 * 110.99572 * 38.95475 * 4 2 1 27 27 H 1.08995 * 109.47174 * 299.99273 * 5 4 2 28 28 H 1.08999 * 109.47200 * 59.99856 * 5 4 2 29 29 H 0.97000 * 120.00886 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.49259 * 298.33681 * 16 14 2 31 31 H 1.09008 * 109.49122 * 58.40391 * 16 14 2 32 32 H 1.08994 * 109.47701 * 60.00527 * 18 17 16 33 33 H 1.09007 * 109.46641 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47351 * 299.99812 * 18 17 16 35 35 H 1.09003 * 109.48471 * 179.28356 * 19 17 16 36 36 H 1.08993 * 109.49202 * 299.35363 * 19 17 16 37 37 H 1.08994 * 109.49389 * 61.55894 * 20 19 17 38 38 H 1.09001 * 109.48896 * 181.61232 * 20 19 17 39 39 H 1.08999 * 109.47087 * 53.80189 * 22 21 14 40 40 H 1.08997 * 109.47190 * 173.80334 * 22 21 14 41 41 H 1.09002 * 109.46816 * 293.80657 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2227 2.3468 6 6 2.5874 -0.5217 3.5560 7 1 2.8364 -1.5699 3.4798 8 6 2.7306 0.1351 4.7598 9 7 3.1717 -0.5143 5.8148 10 14 2.2992 1.9478 4.8917 11 1 0.8697 2.0903 5.2676 12 1 3.1496 2.5847 5.9293 13 1 2.5354 2.6094 3.5835 14 6 2.0400 -0.7212 -1.2493 15 1 3.1268 -0.6500 -1.2920 16 6 1.6266 -2.1937 -1.1933 17 7 2.0839 -2.8750 -2.4125 18 6 1.7717 -4.3095 -2.3625 19 6 1.5036 -2.2512 -3.6099 20 6 1.9171 -0.7786 -3.6660 21 7 1.4602 -0.0971 -2.4467 22 6 1.7728 1.3374 -2.4965 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.4496 -1.4979 1.4100 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6163 2.5525 29 1 3.2728 -0.0523 6.6617 30 1 2.0795 -2.6657 -0.3213 31 1 0.5411 -2.2643 -1.1227 32 1 0.6940 -4.4440 -2.2704 33 1 2.1213 -4.7895 -3.2766 34 1 2.2687 -4.7598 -1.5032 35 1 1.8670 -2.7651 -4.4999 36 1 0.4169 -2.3224 -3.5667 37 1 3.0025 -0.7081 -3.7365 38 1 1.4645 -0.3067 -4.5380 39 1 2.8502 1.4777 -2.4095 40 1 1.4277 1.7518 -3.4437 41 1 1.2724 1.8471 -1.6731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:11 Heat of formation + Delta-G solvation = -5.208281 kcal Electronic energy + Delta-G solvation = -18480.944895 eV Core-core repulsion = 15815.904973 eV Total energy + Delta-G solvation = -2665.039923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80836 -37.79593 -36.29708 -34.80681 -32.60394 -30.37147 -29.82224 -28.22399 -26.28153 -25.39132 -24.10056 -23.07282 -21.98448 -20.05514 -18.88925 -17.24884 -16.75159 -16.57108 -16.17989 -15.74403 -15.65383 -15.50585 -15.00178 -14.89357 -14.53599 -14.16513 -13.94254 -13.54151 -13.34112 -13.11394 -12.92088 -12.71172 -12.59003 -12.55366 -12.41868 -12.23178 -11.88730 -11.84285 -11.66932 -11.44681 -11.16487 -10.82140 -9.39574 -9.24333 -9.08124 -8.30164 -6.34353 1.33683 1.35931 1.47039 2.33582 2.84014 2.99437 3.03981 3.60045 3.82570 4.00931 4.05389 4.22450 4.27441 4.38839 4.42171 4.50083 4.57157 4.63573 4.67026 4.71592 4.77235 4.82504 4.89350 4.92522 4.99905 5.01074 5.01831 5.08311 5.14978 5.19723 5.34702 5.52753 5.90876 5.98830 6.03662 6.18517 6.21715 6.55631 6.66885 6.77369 7.30588 8.86670 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031814 B = 0.005877 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.903454 B = 4763.415599 C = 5364.794431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.089 3.911 3 H 0.066 0.934 4 N -0.682 5.682 5 C 0.180 3.820 6 C -0.527 4.527 7 H 0.037 0.963 8 C 0.009 3.991 9 N -0.947 5.947 10 Si 0.950 3.050 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.251 1.251 14 C 0.112 3.888 15 H 0.028 0.972 16 C 0.072 3.928 17 N -0.562 5.562 18 C 0.027 3.973 19 C 0.057 3.943 20 C 0.057 3.943 21 N -0.540 5.540 22 C 0.022 3.978 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.336 0.664 27 H 0.021 0.979 28 H -0.013 1.013 29 H 0.267 0.733 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.039 0.961 37 H 0.031 0.969 38 H 0.102 0.898 39 H 0.019 0.981 40 H 0.088 0.912 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.343 0.579 -21.312 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 H 0.084 0.916 4 N -0.312 5.312 5 C 0.051 3.949 6 C -0.565 4.565 7 H 0.056 0.944 8 C -0.189 4.189 9 N -0.588 5.588 10 Si 0.773 3.227 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.175 1.175 14 C 0.003 3.997 15 H 0.046 0.954 16 C -0.056 4.056 17 N -0.287 5.287 18 C -0.121 4.121 19 C -0.071 4.071 20 C -0.071 4.071 21 N -0.265 5.265 22 C -0.126 4.126 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.154 0.846 27 H 0.039 0.961 28 H 0.005 0.995 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.120 0.880 39 H 0.038 0.962 40 H 0.107 0.893 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.624 0.671 -21.306 22.046 hybrid contribution -0.719 0.550 1.059 1.393 sum -6.343 1.220 -20.247 21.252 Atomic orbital electron populations 1.22290 0.95804 1.02027 1.01792 1.21538 0.94018 0.96981 0.89706 0.91580 1.60399 1.56973 1.09917 1.03959 1.19721 0.94045 0.92603 0.88528 1.21341 1.43654 0.97502 0.94009 0.94445 1.25859 0.94566 1.03396 0.95053 1.70048 1.48135 1.38921 1.01689 0.85675 0.78783 0.79401 0.78816 1.19026 1.20629 1.17529 1.21379 0.95638 0.93417 0.89310 0.95442 1.22052 0.97822 0.93136 0.92629 1.62138 1.59843 1.03891 1.02783 1.22361 0.99060 0.87334 1.03328 1.22233 0.97446 0.94226 0.93150 1.22248 0.98252 0.93939 0.92670 1.62186 1.58921 1.03460 1.01942 1.22442 0.98769 0.87922 1.03498 0.90089 0.92625 0.94278 0.84557 0.96118 0.99499 0.92363 0.91195 0.94230 0.95341 0.89767 0.91865 0.88569 0.94229 0.95050 0.87965 0.96233 0.89324 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 8.58 71.98 0.62 -4.07 16 2 C 0.09 2.93 1.90 44.91 0.09 3.02 16 3 H 0.07 2.27 6.43 -2.38 -0.02 2.25 16 4 N -0.68 -28.25 5.62 -495.57 -2.78 -31.03 16 5 C 0.18 8.71 4.31 85.56 0.37 9.08 16 6 C -0.53 -31.00 9.87 25.60 0.25 -30.74 16 7 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 8 C 0.01 0.52 5.47 84.65 0.46 0.98 16 9 N -0.95 -59.86 13.96 21.44 0.30 -59.56 16 10 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 14 C 0.11 3.34 1.99 44.92 0.09 3.43 16 15 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 16 C 0.07 2.07 4.28 86.31 0.37 2.44 16 17 N -0.56 -13.99 4.97 -921.93 -4.58 -18.57 16 18 C 0.03 0.55 9.60 127.69 1.23 1.78 16 19 C 0.06 1.14 5.62 86.31 0.49 1.63 16 20 C 0.06 1.14 5.61 86.31 0.48 1.63 16 21 N -0.54 -12.94 3.88 -896.53 -3.48 -16.41 16 22 C 0.02 0.46 8.78 127.69 1.12 1.58 16 23 H 0.08 2.10 6.88 -2.39 -0.02 2.08 16 24 H 0.05 1.58 6.51 -2.38 -0.02 1.57 16 25 H 0.04 1.21 7.45 -2.39 -0.02 1.19 16 26 H 0.34 13.76 7.72 -89.69 -0.69 13.07 16 27 H 0.02 1.02 7.11 -2.39 -0.02 1.01 16 28 H -0.01 -0.59 6.86 -2.39 -0.02 -0.61 16 29 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.07 2.30 7.23 -2.39 -0.02 2.28 16 31 H 0.04 1.12 6.48 -2.38 -0.02 1.11 16 32 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.38 8.13 -2.38 -0.02 1.36 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.51 8.13 -2.39 -0.02 1.49 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 1.54 8.07 -2.39 -0.02 1.52 16 39 H 0.02 0.44 8.12 -2.39 -0.02 0.42 16 40 H 0.09 1.43 8.03 -2.39 -0.02 1.41 16 41 H 0.07 1.49 6.21 -2.39 -0.01 1.48 16 Total: -1.00 -66.00 309.10 -2.86 -68.86 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.24 Total: 19.54 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.56 Total: -9.25 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -10.54 Total: -125.58 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -66.00 -2.86 -68.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.651 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds