Wall clock time and date at job start Mon Mar 30 2020 04:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47651 * 2 1 4 4 N 1.46904 * 109.47058 * 119.99942 * 2 1 3 5 5 C 1.46901 * 111.00112 * 274.99892 * 4 2 1 6 6 C 1.50700 * 109.46960 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00334 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99814 * 180.27637 * 6 5 4 9 9 N 1.31520 * 119.99804 * 359.72103 * 8 6 5 10 10 Si 1.86799 * 120.00144 * 179.72181 * 8 6 5 11 11 H 1.48505 * 109.46835 * 59.99810 * 10 8 6 12 12 H 1.48494 * 109.47259 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46924 * 300.00431 * 10 8 6 14 14 C 1.53002 * 109.47107 * 239.99743 * 2 1 3 15 15 H 1.09003 * 109.48444 * 55.69865 * 14 2 1 16 16 C 1.53050 * 109.48799 * 295.65577 * 14 2 1 17 17 N 1.46963 * 109.35881 * 181.62838 * 16 14 2 18 18 C 1.46904 * 110.99268 * 183.18900 * 17 16 14 19 19 C 1.46954 * 110.88017 * 59.32536 * 17 16 14 20 20 C 1.53052 * 109.36527 * 300.67526 * 19 17 16 21 21 N 1.46954 * 109.48813 * 175.74372 * 14 2 1 22 22 C 1.46904 * 111.00046 * 303.15442 * 21 14 2 23 23 H 1.08994 * 109.47327 * 65.51280 * 1 2 3 24 24 H 1.09000 * 109.47091 * 185.51642 * 1 2 3 25 25 H 1.09009 * 109.46938 * 305.51493 * 1 2 3 26 26 H 1.00900 * 111.00122 * 38.95154 * 4 2 1 27 27 H 1.08999 * 109.46939 * 59.99967 * 5 4 2 28 28 H 1.08997 * 109.46951 * 299.99804 * 5 4 2 29 29 H 0.96998 * 119.99473 * 179.97438 * 9 8 6 30 30 H 1.08995 * 109.49253 * 301.59632 * 16 14 2 31 31 H 1.09004 * 109.48757 * 61.64550 * 16 14 2 32 32 H 1.08997 * 109.47271 * 60.00785 * 18 17 16 33 33 H 1.09004 * 109.46801 * 179.97438 * 18 17 16 34 34 H 1.08996 * 109.47617 * 299.99929 * 18 17 16 35 35 H 1.09000 * 109.49183 * 60.64424 * 19 17 16 36 36 H 1.09004 * 109.48938 * 180.68548 * 19 17 16 37 37 H 1.08996 * 109.49011 * 178.37330 * 20 19 17 38 38 H 1.09004 * 109.48615 * 298.43603 * 20 19 17 39 39 H 1.09000 * 109.46767 * 66.60590 * 22 21 14 40 40 H 1.09000 * 109.47038 * 186.59658 * 22 21 14 41 41 H 1.08994 * 109.47358 * 306.60321 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5885 -0.5216 3.5557 7 1 2.8380 -1.5696 3.4794 8 6 2.7270 0.1340 4.7608 9 7 2.4226 1.4101 4.8539 10 14 3.3468 -0.7902 6.2611 11 1 4.7042 -1.3264 5.9862 12 1 3.4046 0.1333 7.4225 13 1 2.4239 -1.9126 6.5672 14 6 2.0400 -0.7213 -1.2492 15 1 1.6152 -0.2541 -2.1377 16 6 1.6212 -2.1924 -1.1961 17 7 2.1456 -2.8912 -2.3778 18 6 1.7008 -4.2911 -2.4020 19 6 3.6116 -2.8035 -2.4304 20 6 4.0304 -1.3324 -2.4835 21 7 3.5059 -0.6331 -1.3021 22 6 3.9503 0.7669 -1.2782 23 1 -0.3634 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 -0.3633 0.5970 0.8366 26 1 1.4495 -1.4979 1.4101 27 1 1.0871 0.6163 2.5525 28 1 2.7589 1.0461 2.1183 29 1 2.5197 1.8712 5.7017 30 1 2.0230 -2.6526 -0.2934 31 1 0.5333 -2.2607 -1.1859 32 1 0.6117 -4.3258 -2.4302 33 1 2.1026 -4.7848 -3.2869 34 1 2.0575 -4.8013 -1.5073 35 1 4.0361 -3.2706 -1.5418 36 1 3.9750 -3.3177 -3.3202 37 1 5.1182 -1.2641 -2.4934 38 1 3.6286 -0.8722 -3.3862 39 1 3.7072 1.2087 -0.3118 40 1 5.0280 0.8087 -1.4359 41 1 3.4455 1.3219 -2.0688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:15 Heat of formation + Delta-G solvation = 15.851906 kcal Electronic energy + Delta-G solvation = -18585.162173 eV Core-core repulsion = 15921.035489 eV Total energy + Delta-G solvation = -2664.126684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.47214 -36.25294 -34.86926 -32.83323 -30.75005 -29.30225 -28.27690 -25.91244 -25.14228 -24.12037 -22.67937 -21.59770 -20.52723 -18.84354 -16.47329 -15.77405 -15.42727 -15.00008 -14.62422 -14.47707 -14.32963 -13.78359 -13.66725 -13.39634 -12.99771 -12.39006 -12.29475 -12.09782 -11.80722 -11.72425 -11.52192 -11.28819 -11.22866 -11.04196 -10.94774 -10.73944 -10.55271 -10.42512 -9.97334 -9.72428 -9.11161 -8.42311 -8.24780 -7.83188 -7.08086 -5.97710 -3.98463 3.36587 3.40229 3.43797 4.04742 4.19946 4.47661 5.00070 5.09744 5.19576 5.37681 5.39380 5.40879 5.46404 5.51319 5.59556 5.67074 5.75956 5.77602 5.79570 5.84722 5.88879 5.91462 6.05243 6.09410 6.22178 6.35523 6.43579 6.46707 6.58724 7.07998 7.12177 7.32931 7.47338 7.50693 7.53982 7.86440 8.21619 8.51032 8.72595 9.11188 9.65964 11.13364 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.005997 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.634052 B = 4668.172973 C = 4808.489611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.086 3.914 3 H 0.075 0.925 4 N -0.665 5.665 5 C 0.197 3.803 6 C -0.509 4.509 7 H 0.060 0.940 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.106 3.894 15 H 0.037 0.963 16 C 0.061 3.939 17 N -0.549 5.549 18 C 0.026 3.974 19 C 0.058 3.942 20 C 0.057 3.943 21 N -0.516 5.516 22 C 0.029 3.971 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.324 0.676 27 H -0.017 1.017 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 -5.946 -15.077 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.093 0.907 4 N -0.295 5.295 5 C 0.071 3.929 6 C -0.547 4.547 7 H 0.078 0.922 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.003 4.003 15 H 0.055 0.945 16 C -0.067 4.067 17 N -0.274 5.274 18 C -0.122 4.122 19 C -0.071 4.071 20 C -0.071 4.071 21 N -0.241 5.241 22 C -0.119 4.119 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.141 0.859 27 H 0.001 0.999 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -0.169 -5.711 -15.097 16.142 hybrid contribution -0.635 -0.255 1.099 1.294 sum -0.804 -5.965 -13.998 15.238 Atomic orbital electron populations 1.22543 0.98120 1.01724 1.01562 1.21568 0.91386 0.97962 0.91683 0.90674 1.60683 1.54944 1.09790 1.04050 1.19529 0.94847 0.91814 0.86742 1.21156 1.43154 0.96881 0.93545 0.92172 1.24970 0.95766 0.94909 0.98925 1.69955 1.49183 1.09016 1.25809 0.86581 0.79459 0.79420 0.82030 1.20218 1.21429 1.20394 1.21669 0.87189 0.95063 0.96390 0.94525 1.22216 0.98987 0.93895 0.91562 1.62205 1.10062 1.13782 1.41329 1.22311 1.00886 0.88618 1.00411 1.22131 0.87647 0.96567 1.00706 1.22143 0.99442 0.93807 0.91742 1.61944 1.09730 1.14038 1.38349 1.22349 0.99772 0.88321 1.01452 0.93174 0.92759 0.92185 0.85908 0.99914 0.95700 0.92997 0.92235 0.90999 0.91638 0.91821 0.95497 0.93694 0.91033 0.90687 0.94992 0.90229 0.92066 0.96636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.77 37.16 0.33 -2.48 16 2 C 0.09 1.52 2.01 -67.71 -0.14 1.38 16 3 H 0.08 1.42 5.93 -51.93 -0.31 1.11 16 4 N -0.67 -14.08 5.53 -107.99 -0.60 -14.68 16 5 C 0.20 5.14 5.24 -4.97 -0.03 5.12 16 6 C -0.51 -14.52 9.32 -34.44 -0.32 -14.84 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 10 Si 0.90 22.01 29.54 -169.99 -5.02 16.98 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.11 1.67 1.80 -67.66 -0.12 1.55 16 15 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 16 C 0.06 0.91 4.29 -3.76 -0.02 0.89 16 17 N -0.55 -7.37 4.97 -242.75 -1.21 -8.58 16 18 C 0.03 0.29 9.60 60.07 0.58 0.87 16 19 C 0.06 0.75 5.62 -3.77 -0.02 0.73 16 20 C 0.06 0.77 5.61 -3.76 -0.02 0.75 16 21 N -0.52 -8.30 4.70 -234.72 -1.10 -9.40 16 22 C 0.03 0.44 8.98 60.07 0.54 0.98 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.79 6.75 -51.93 -0.35 0.44 16 25 H 0.06 1.03 7.60 -51.92 -0.39 0.63 16 26 H 0.32 6.70 7.58 -39.29 -0.30 6.41 16 27 H -0.02 -0.47 7.54 -51.93 -0.39 -0.86 16 28 H 0.02 0.71 8.05 -51.93 -0.42 0.29 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.06 1.01 7.05 -51.93 -0.37 0.64 16 31 H 0.07 1.00 6.76 -51.93 -0.35 0.65 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 37 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 1.40 6.55 -51.93 -0.34 1.06 16 40 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 41 H 0.02 0.21 8.12 -51.93 -0.42 -0.21 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -30.09 315.27 -9.16 -39.25 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.40 Total: 1.56 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 0.68 Total: -3.56 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -2.17 Total: -58.99 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.09 -9.16 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.102 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds