Wall clock time and date at job start Mon Mar 30 2020 04:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47651 * 2 1 4 4 N 1.46904 * 109.47058 * 119.99942 * 2 1 3 5 5 C 1.46901 * 111.00112 * 274.99892 * 4 2 1 6 6 C 1.50700 * 109.46960 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00334 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99814 * 180.27637 * 6 5 4 9 9 N 1.31520 * 119.99804 * 359.72103 * 8 6 5 10 10 Si 1.86799 * 120.00144 * 179.72181 * 8 6 5 11 11 H 1.48505 * 109.46835 * 59.99810 * 10 8 6 12 12 H 1.48494 * 109.47259 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46924 * 300.00431 * 10 8 6 14 14 C 1.53002 * 109.47107 * 239.99743 * 2 1 3 15 15 H 1.09003 * 109.48444 * 55.69865 * 14 2 1 16 16 C 1.53050 * 109.48799 * 295.65577 * 14 2 1 17 17 N 1.46963 * 109.35881 * 181.62838 * 16 14 2 18 18 C 1.46904 * 110.99268 * 183.18900 * 17 16 14 19 19 C 1.46954 * 110.88017 * 59.32536 * 17 16 14 20 20 C 1.53052 * 109.36527 * 300.67526 * 19 17 16 21 21 N 1.46954 * 109.48813 * 175.74372 * 14 2 1 22 22 C 1.46904 * 111.00046 * 303.15442 * 21 14 2 23 23 H 1.08994 * 109.47327 * 65.51280 * 1 2 3 24 24 H 1.09000 * 109.47091 * 185.51642 * 1 2 3 25 25 H 1.09009 * 109.46938 * 305.51493 * 1 2 3 26 26 H 1.00900 * 111.00122 * 38.95154 * 4 2 1 27 27 H 1.08999 * 109.46939 * 59.99967 * 5 4 2 28 28 H 1.08997 * 109.46951 * 299.99804 * 5 4 2 29 29 H 0.96998 * 119.99473 * 179.97438 * 9 8 6 30 30 H 1.08995 * 109.49253 * 301.59632 * 16 14 2 31 31 H 1.09004 * 109.48757 * 61.64550 * 16 14 2 32 32 H 1.08997 * 109.47271 * 60.00785 * 18 17 16 33 33 H 1.09004 * 109.46801 * 179.97438 * 18 17 16 34 34 H 1.08996 * 109.47617 * 299.99929 * 18 17 16 35 35 H 1.09000 * 109.49183 * 60.64424 * 19 17 16 36 36 H 1.09004 * 109.48938 * 180.68548 * 19 17 16 37 37 H 1.08996 * 109.49011 * 178.37330 * 20 19 17 38 38 H 1.09004 * 109.48615 * 298.43603 * 20 19 17 39 39 H 1.09000 * 109.46767 * 66.60590 * 22 21 14 40 40 H 1.09000 * 109.47038 * 186.59658 * 22 21 14 41 41 H 1.08994 * 109.47358 * 306.60321 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5885 -0.5216 3.5557 7 1 2.8380 -1.5696 3.4794 8 6 2.7270 0.1340 4.7608 9 7 2.4226 1.4101 4.8539 10 14 3.3468 -0.7902 6.2611 11 1 4.7042 -1.3264 5.9862 12 1 3.4046 0.1333 7.4225 13 1 2.4239 -1.9126 6.5672 14 6 2.0400 -0.7213 -1.2492 15 1 1.6152 -0.2541 -2.1377 16 6 1.6212 -2.1924 -1.1961 17 7 2.1456 -2.8912 -2.3778 18 6 1.7008 -4.2911 -2.4020 19 6 3.6116 -2.8035 -2.4304 20 6 4.0304 -1.3324 -2.4835 21 7 3.5059 -0.6331 -1.3021 22 6 3.9503 0.7669 -1.2782 23 1 -0.3634 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 -0.3633 0.5970 0.8366 26 1 1.4495 -1.4979 1.4101 27 1 1.0871 0.6163 2.5525 28 1 2.7589 1.0461 2.1183 29 1 2.5197 1.8712 5.7017 30 1 2.0230 -2.6526 -0.2934 31 1 0.5333 -2.2607 -1.1859 32 1 0.6117 -4.3258 -2.4302 33 1 2.1026 -4.7848 -3.2869 34 1 2.0575 -4.8013 -1.5073 35 1 4.0361 -3.2706 -1.5418 36 1 3.9750 -3.3177 -3.3202 37 1 5.1182 -1.2641 -2.4934 38 1 3.6286 -0.8722 -3.3862 39 1 3.7072 1.2087 -0.3118 40 1 5.0280 0.8087 -1.4359 41 1 3.4455 1.3219 -2.0688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:14 Heat of formation + Delta-G solvation = -7.445673 kcal Electronic energy + Delta-G solvation = -18586.172432 eV Core-core repulsion = 15921.035489 eV Total energy + Delta-G solvation = -2665.136943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68543 -37.68119 -36.14189 -34.86404 -32.39945 -30.46790 -29.55872 -27.89080 -26.21964 -25.40437 -24.02205 -23.44004 -21.76775 -20.17199 -18.50272 -17.16813 -16.77268 -16.41543 -16.15391 -15.69277 -15.57682 -15.32796 -15.06393 -14.70009 -14.45374 -14.00655 -13.55516 -13.44460 -13.30820 -13.19251 -12.88460 -12.70329 -12.63863 -12.51690 -12.41342 -12.19260 -12.12060 -11.90420 -11.61781 -11.30701 -11.07692 -10.62956 -9.32341 -9.03168 -8.87517 -8.19289 -6.29313 1.40474 1.43997 1.51877 2.41334 3.00420 3.03689 3.13711 3.62467 3.87857 4.02216 4.14732 4.28879 4.35344 4.40041 4.41772 4.45036 4.58108 4.65411 4.68222 4.74602 4.78675 4.88301 4.92020 5.00196 5.03094 5.03952 5.08755 5.17676 5.22578 5.27585 5.39885 5.65436 6.03970 6.05525 6.08445 6.30561 6.34592 6.55727 6.82475 6.98039 7.41292 8.91777 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.005997 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.634052 B = 4668.172973 C = 4808.489611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.085 3.915 3 H 0.057 0.943 4 N -0.661 5.661 5 C 0.218 3.782 6 C -0.530 4.530 7 H 0.060 0.940 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.969 3.031 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.115 3.885 15 H 0.046 0.954 16 C 0.068 3.932 17 N -0.552 5.552 18 C 0.026 3.974 19 C 0.059 3.941 20 C 0.058 3.942 21 N -0.542 5.542 22 C 0.035 3.965 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.328 0.672 27 H -0.041 1.041 28 H -0.007 1.007 29 H 0.264 0.736 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.020 0.980 35 H 0.026 0.974 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.781 -7.524 -16.208 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 H 0.075 0.925 4 N -0.291 5.291 5 C 0.090 3.910 6 C -0.568 4.568 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.794 3.206 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.005 3.995 15 H 0.063 0.937 16 C -0.060 4.060 17 N -0.276 5.276 18 C -0.122 4.122 19 C -0.069 4.069 20 C -0.069 4.069 21 N -0.266 5.266 22 C -0.113 4.113 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.145 0.855 27 H -0.024 1.024 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.104 -7.306 -16.258 17.825 hybrid contribution -0.651 0.250 1.372 1.539 sum -0.755 -7.056 -14.887 16.491 Atomic orbital electron populations 1.22430 0.96284 1.02355 1.02023 1.21623 0.92903 0.97020 0.91070 0.92518 1.60547 1.55934 1.09193 1.03441 1.19104 0.92419 0.91439 0.88067 1.21509 1.43513 0.97066 0.94748 0.92213 1.25899 0.95694 0.95763 1.02231 1.70087 1.49981 1.10643 1.26774 0.85447 0.79040 0.78274 0.77885 1.19611 1.20772 1.19165 1.21533 0.87350 0.95552 0.95046 0.93665 1.22092 0.99515 0.93110 0.91294 1.62249 1.10276 1.15121 1.39989 1.22392 1.01600 0.87225 1.01010 1.22183 0.87408 0.96255 1.01095 1.22207 1.00121 0.93837 0.90784 1.61923 1.09898 1.14510 1.40311 1.22240 1.00752 0.88263 1.00080 0.90574 0.91474 0.94337 0.85467 1.02384 0.98902 0.92762 0.94758 0.89918 0.90702 0.89868 0.96156 0.95516 0.88368 0.89530 0.94249 0.93523 0.90761 0.95179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.27 8.77 71.98 0.63 -4.64 16 2 C 0.09 3.04 2.01 44.91 0.09 3.13 16 3 H 0.06 2.23 5.93 -2.39 -0.01 2.22 16 4 N -0.66 -28.78 5.53 -495.58 -2.74 -31.52 16 5 C 0.22 11.84 5.24 85.56 0.45 12.29 16 6 C -0.53 -30.89 9.32 25.60 0.24 -30.65 16 7 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 10 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 14 C 0.11 3.50 1.80 44.92 0.08 3.58 16 15 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 16 C 0.07 1.93 4.29 86.31 0.37 2.30 16 17 N -0.55 -13.50 4.97 -921.92 -4.58 -18.08 16 18 C 0.03 0.50 9.60 127.69 1.23 1.73 16 19 C 0.06 1.39 5.62 86.31 0.49 1.87 16 20 C 0.06 1.46 5.61 86.31 0.48 1.94 16 21 N -0.54 -17.03 4.70 -896.53 -4.21 -21.24 16 22 C 0.03 1.05 8.98 127.69 1.15 2.20 16 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.07 1.88 6.75 -2.39 -0.02 1.86 16 25 H 0.04 1.33 7.60 -2.38 -0.02 1.32 16 26 H 0.33 13.80 7.58 -89.69 -0.68 13.12 16 27 H -0.04 -2.41 7.54 -2.39 -0.02 -2.43 16 28 H -0.01 -0.43 8.05 -2.39 -0.02 -0.45 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.03 1.15 7.05 -2.39 -0.02 1.13 16 31 H 0.08 2.13 6.76 -2.39 -0.02 2.11 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.31 8.13 -2.38 -0.02 1.29 16 34 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 1.80 8.13 -2.38 -0.02 1.78 16 37 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 38 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 1.71 6.55 -2.39 -0.02 1.69 16 40 H 0.07 2.00 8.02 -2.39 -0.02 1.98 16 41 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 Total: -1.00 -65.27 315.27 -3.26 -68.53 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.30 Total: 17.81 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.66 Total: -5.67 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -11.25 Total: -127.93 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.27 -3.26 -68.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.082 kcal (2) G-P(sol) polarization free energy of solvation -65.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds