Wall clock time and date at job start Mon Mar 30 2020 04:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47330 * 2 1 4 4 N 1.46894 * 109.47074 * 239.99634 * 2 1 3 5 5 C 1.46902 * 111.00151 * 85.00001 * 4 2 1 6 6 C 1.50697 * 109.47016 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00032 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00514 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46696 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47256 * 119.99779 * 10 8 6 13 13 H 1.48493 * 109.47434 * 240.00317 * 10 8 6 14 14 C 1.53001 * 109.46964 * 119.99707 * 2 1 3 15 15 H 1.09000 * 109.49076 * 301.85220 * 14 2 1 16 16 C 1.53050 * 109.49244 * 61.91575 * 14 2 1 17 17 N 1.46950 * 109.36684 * 178.36701 * 16 14 2 18 18 C 1.46897 * 111.00172 * 176.81573 * 17 16 14 19 19 C 1.46960 * 110.90217 * 300.69302 * 17 16 14 20 20 C 1.53056 * 109.36077 * 59.28685 * 19 17 16 21 21 N 1.46956 * 109.38065 * 301.63172 * 20 19 17 22 22 C 1.46901 * 110.99767 * 183.17973 * 21 20 19 23 23 H 1.08994 * 109.46777 * 54.00854 * 1 2 3 24 24 H 1.09002 * 109.47123 * 174.01105 * 1 2 3 25 25 H 1.08999 * 109.46751 * 294.00797 * 1 2 3 26 26 H 1.00907 * 110.99850 * 321.04294 * 4 2 1 27 27 H 1.08996 * 109.47106 * 300.00031 * 5 4 2 28 28 H 1.08995 * 109.46676 * 60.00075 * 5 4 2 29 29 H 0.96998 * 120.00455 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.49232 * 298.33875 * 16 14 2 31 31 H 1.09004 * 109.48291 * 58.40373 * 16 14 2 32 32 H 1.09006 * 109.47249 * 60.00072 * 18 17 16 33 33 H 1.09001 * 109.47299 * 180.02562 * 18 17 16 34 34 H 1.09004 * 109.47091 * 299.99863 * 18 17 16 35 35 H 1.09000 * 109.46917 * 299.33360 * 19 17 16 36 36 H 1.08996 * 109.50964 * 179.26324 * 19 17 16 37 37 H 1.09000 * 109.48894 * 181.65963 * 20 19 17 38 38 H 1.09000 * 109.48746 * 61.61444 * 20 19 17 39 39 H 1.08993 * 109.47730 * 53.41527 * 22 21 20 40 40 H 1.09003 * 109.47132 * 173.41922 * 22 21 20 41 41 H 1.09004 * 109.46856 * 293.41825 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2225 -2.3469 6 6 2.5885 -0.5218 -3.5556 7 1 2.8381 -1.5698 -3.4792 8 6 2.7319 0.1349 -4.7594 9 7 2.4275 1.4110 -4.8527 10 14 3.3585 -0.7876 -6.2580 11 1 3.6270 -2.2016 -5.8921 12 1 2.3343 -0.7407 -7.3322 13 1 4.6117 -0.1543 -6.7410 14 6 2.0400 -0.7212 1.2493 15 1 1.6500 -0.2271 2.1391 16 6 1.5699 -2.1775 1.2260 17 7 2.0937 -2.8777 2.4070 18 6 1.6016 -4.2607 2.4604 19 6 3.5626 -2.8402 2.4301 20 6 4.0328 -1.3838 2.4529 21 7 3.5089 -0.6837 1.2718 22 6 4.0011 0.6994 1.2184 23 1 -0.3633 0.6039 -0.8315 24 1 -0.3633 -1.0221 -0.1072 25 1 -0.3633 0.4181 0.9388 26 1 1.4495 -1.4981 -1.4098 27 1 1.0871 0.6161 -2.5525 28 1 2.7589 1.0460 -2.1182 29 1 2.5280 1.8730 -5.6996 30 1 0.4804 -2.2082 1.2385 31 1 1.9373 -2.6637 0.3222 32 1 1.9225 -4.7954 1.5663 33 1 2.0041 -4.7558 3.3442 34 1 0.5127 -4.2573 2.5105 35 1 3.9527 -3.3343 1.5402 36 1 3.9259 -3.3536 3.3203 37 1 5.1222 -1.3531 2.4403 38 1 3.6657 -0.8974 3.3567 39 1 5.0890 0.7009 1.2863 40 1 3.6951 1.1579 0.2781 41 1 3.5844 1.2657 2.0514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:20 Heat of formation + Delta-G solvation = 15.954669 kcal Electronic energy + Delta-G solvation = -18589.734652 eV Core-core repulsion = 15925.612423 eV Total energy + Delta-G solvation = -2664.122228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.47466 -36.25760 -34.85889 -32.83942 -30.76207 -29.30537 -28.25221 -25.91852 -25.13772 -24.13301 -22.66430 -21.60621 -20.53896 -18.83234 -16.47608 -15.77651 -15.42772 -15.00882 -14.62842 -14.47795 -14.32306 -13.78147 -13.66457 -13.38747 -13.00424 -12.38440 -12.28942 -12.11180 -11.81322 -11.73201 -11.51040 -11.29151 -11.23253 -11.04666 -10.93674 -10.76723 -10.51756 -10.41518 -9.97489 -9.72397 -9.08686 -8.43319 -8.25308 -7.82462 -7.07579 -5.98157 -3.98732 3.33726 3.40996 3.46418 4.04245 4.20654 4.47664 5.00036 5.09560 5.19582 5.37472 5.39465 5.41004 5.46118 5.50852 5.59210 5.66907 5.76408 5.77856 5.79752 5.84211 5.89582 5.91813 6.04987 6.09411 6.21787 6.35873 6.42955 6.47640 6.58423 7.07701 7.11861 7.32804 7.47996 7.51135 7.54003 7.86935 8.21318 8.51098 8.72709 9.11608 9.65896 11.13020 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026594 B = 0.005971 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.603547 B = 4688.244502 C = 4801.894073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.086 3.914 3 H 0.075 0.925 4 N -0.664 5.664 5 C 0.197 3.803 6 C -0.507 4.507 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.106 3.894 15 H 0.037 0.963 16 C 0.061 3.939 17 N -0.549 5.549 18 C 0.026 3.974 19 C 0.058 3.942 20 C 0.057 3.943 21 N -0.515 5.515 22 C 0.029 3.971 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.324 0.676 27 H -0.017 1.017 28 H 0.025 0.975 29 H 0.259 0.741 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 -6.018 15.092 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 H 0.093 0.907 4 N -0.294 5.294 5 C 0.070 3.930 6 C -0.545 4.545 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.004 4.004 15 H 0.055 0.945 16 C -0.066 4.066 17 N -0.274 5.274 18 C -0.122 4.122 19 C -0.070 4.070 20 C -0.072 4.072 21 N -0.239 5.239 22 C -0.119 4.119 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.141 0.859 27 H 0.001 0.999 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -0.244 -5.793 15.117 16.190 hybrid contribution -0.627 -0.225 -1.106 1.291 sum -0.870 -6.018 14.011 15.273 Atomic orbital electron populations 1.22547 0.98121 1.01738 1.01551 1.21569 0.91410 0.97899 0.91717 0.90717 1.60673 1.54966 1.09753 1.04001 1.19541 0.94858 0.91826 0.86790 1.21233 1.42849 0.96904 0.93559 0.92054 1.24973 0.95803 0.94901 0.98952 1.69971 1.49329 1.09011 1.25670 0.86470 0.78393 0.80038 0.82665 1.19730 1.21225 1.21076 1.21663 0.87247 0.95079 0.96369 0.94527 1.22221 0.98866 0.94052 0.91507 1.62191 1.08802 1.15036 1.41351 1.22312 1.00647 0.88855 1.00411 1.22133 0.87533 0.96696 1.00677 1.22143 0.99369 0.93897 0.91753 1.61940 1.08287 1.15398 1.38293 1.22348 0.99880 0.88538 1.01109 0.92198 0.92737 0.93163 0.85892 0.99915 0.95704 0.93111 0.90951 0.92386 0.95511 0.91811 0.91639 0.93702 0.91029 0.90690 0.94999 0.92011 0.90169 0.96769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.70 37.16 0.32 -2.48 16 2 C 0.09 1.51 1.94 -67.71 -0.13 1.38 16 3 H 0.07 1.41 5.97 -51.93 -0.31 1.10 16 4 N -0.66 -14.04 5.56 -108.00 -0.60 -14.64 16 5 C 0.20 5.11 5.24 -4.98 -0.03 5.09 16 6 C -0.51 -14.45 9.32 -34.44 -0.32 -14.77 16 7 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 10 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.11 1.66 1.84 -67.66 -0.12 1.54 16 15 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 16 C 0.06 0.91 4.28 -3.77 -0.02 0.89 16 17 N -0.55 -7.35 4.97 -242.75 -1.21 -8.55 16 18 C 0.03 0.29 9.60 60.06 0.58 0.86 16 19 C 0.06 0.75 5.62 -3.76 -0.02 0.73 16 20 C 0.06 0.77 5.62 -3.76 -0.02 0.75 16 21 N -0.52 -8.29 4.65 -234.72 -1.09 -9.38 16 22 C 0.03 0.45 9.06 60.07 0.54 0.99 16 23 H 0.06 1.02 7.61 -51.93 -0.40 0.63 16 24 H 0.05 0.79 6.72 -51.93 -0.35 0.45 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.32 6.71 7.59 -39.29 -0.30 6.41 16 27 H -0.02 -0.47 7.55 -51.93 -0.39 -0.86 16 28 H 0.02 0.70 8.05 -51.93 -0.42 0.28 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.07 1.00 6.70 -51.93 -0.35 0.65 16 31 H 0.06 0.98 7.09 -51.93 -0.37 0.61 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.08 1.42 6.37 -51.93 -0.33 1.08 16 41 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -30.11 315.23 -9.15 -39.25 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.40 Total: 1.47 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.69 Total: -3.54 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -2.16 Total: -58.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.11 -9.15 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.209 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds