Wall clock time and date at job start Mon Mar 30 2020 04:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47330 * 2 1 4 4 N 1.46894 * 109.47074 * 239.99634 * 2 1 3 5 5 C 1.46902 * 111.00151 * 85.00001 * 4 2 1 6 6 C 1.50697 * 109.47016 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00032 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00514 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46696 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47256 * 119.99779 * 10 8 6 13 13 H 1.48493 * 109.47434 * 240.00317 * 10 8 6 14 14 C 1.53001 * 109.46964 * 119.99707 * 2 1 3 15 15 H 1.09000 * 109.49076 * 301.85220 * 14 2 1 16 16 C 1.53050 * 109.49244 * 61.91575 * 14 2 1 17 17 N 1.46950 * 109.36684 * 178.36701 * 16 14 2 18 18 C 1.46897 * 111.00172 * 176.81573 * 17 16 14 19 19 C 1.46960 * 110.90217 * 300.69302 * 17 16 14 20 20 C 1.53056 * 109.36077 * 59.28685 * 19 17 16 21 21 N 1.46956 * 109.38065 * 301.63172 * 20 19 17 22 22 C 1.46901 * 110.99767 * 183.17973 * 21 20 19 23 23 H 1.08994 * 109.46777 * 54.00854 * 1 2 3 24 24 H 1.09002 * 109.47123 * 174.01105 * 1 2 3 25 25 H 1.08999 * 109.46751 * 294.00797 * 1 2 3 26 26 H 1.00907 * 110.99850 * 321.04294 * 4 2 1 27 27 H 1.08996 * 109.47106 * 300.00031 * 5 4 2 28 28 H 1.08995 * 109.46676 * 60.00075 * 5 4 2 29 29 H 0.96998 * 120.00455 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.49232 * 298.33875 * 16 14 2 31 31 H 1.09004 * 109.48291 * 58.40373 * 16 14 2 32 32 H 1.09006 * 109.47249 * 60.00072 * 18 17 16 33 33 H 1.09001 * 109.47299 * 180.02562 * 18 17 16 34 34 H 1.09004 * 109.47091 * 299.99863 * 18 17 16 35 35 H 1.09000 * 109.46917 * 299.33360 * 19 17 16 36 36 H 1.08996 * 109.50964 * 179.26324 * 19 17 16 37 37 H 1.09000 * 109.48894 * 181.65963 * 20 19 17 38 38 H 1.09000 * 109.48746 * 61.61444 * 20 19 17 39 39 H 1.08993 * 109.47730 * 53.41527 * 22 21 20 40 40 H 1.09003 * 109.47132 * 173.41922 * 22 21 20 41 41 H 1.09004 * 109.46856 * 293.41825 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2225 -2.3469 6 6 2.5885 -0.5218 -3.5556 7 1 2.8381 -1.5698 -3.4792 8 6 2.7319 0.1349 -4.7594 9 7 2.4275 1.4110 -4.8527 10 14 3.3585 -0.7876 -6.2580 11 1 3.6270 -2.2016 -5.8921 12 1 2.3343 -0.7407 -7.3322 13 1 4.6117 -0.1543 -6.7410 14 6 2.0400 -0.7212 1.2493 15 1 1.6500 -0.2271 2.1391 16 6 1.5699 -2.1775 1.2260 17 7 2.0937 -2.8777 2.4070 18 6 1.6016 -4.2607 2.4604 19 6 3.5626 -2.8402 2.4301 20 6 4.0328 -1.3838 2.4529 21 7 3.5089 -0.6837 1.2718 22 6 4.0011 0.6994 1.2184 23 1 -0.3633 0.6039 -0.8315 24 1 -0.3633 -1.0221 -0.1072 25 1 -0.3633 0.4181 0.9388 26 1 1.4495 -1.4981 -1.4098 27 1 1.0871 0.6161 -2.5525 28 1 2.7589 1.0460 -2.1182 29 1 2.5280 1.8730 -5.6996 30 1 0.4804 -2.2082 1.2385 31 1 1.9373 -2.6637 0.3222 32 1 1.9225 -4.7954 1.5663 33 1 2.0041 -4.7558 3.3442 34 1 0.5127 -4.2573 2.5105 35 1 3.9527 -3.3343 1.5402 36 1 3.9259 -3.3536 3.3203 37 1 5.1222 -1.3531 2.4403 38 1 3.6657 -0.8974 3.3567 39 1 5.0890 0.7009 1.2863 40 1 3.6951 1.1579 0.2781 41 1 3.5844 1.2657 2.0514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:19 Heat of formation + Delta-G solvation = -7.325927 kcal Electronic energy + Delta-G solvation = -18590.744174 eV Core-core repulsion = 15925.612423 eV Total energy + Delta-G solvation = -2665.131751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68720 -37.68204 -36.13262 -34.86746 -32.41242 -30.46719 -29.53758 -27.89093 -26.21746 -25.41975 -24.00038 -23.45193 -21.77529 -20.16056 -18.50735 -17.16679 -16.77492 -16.41716 -16.15923 -15.68797 -15.57656 -15.32132 -15.06282 -14.69302 -14.45783 -14.01501 -13.54735 -13.44827 -13.30849 -13.20233 -12.89039 -12.68905 -12.66436 -12.50663 -12.40391 -12.19007 -12.11660 -11.90488 -11.60852 -11.28739 -11.06362 -10.64282 -9.32276 -9.02686 -8.86826 -8.19644 -6.29424 1.40258 1.41204 1.54834 2.41254 3.00438 3.03918 3.13560 3.63111 3.87572 4.02293 4.14172 4.29153 4.34728 4.40214 4.41992 4.45341 4.58006 4.66150 4.68097 4.74815 4.78926 4.88086 4.92007 5.00099 5.03111 5.04051 5.09274 5.17914 5.22358 5.27886 5.39867 5.65916 6.04042 6.05635 6.08527 6.30763 6.35076 6.55998 6.83047 6.98328 7.41347 8.91864 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026594 B = 0.005971 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.603547 B = 4688.244502 C = 4801.894073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.085 3.915 3 H 0.056 0.944 4 N -0.661 5.661 5 C 0.217 3.783 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.969 3.031 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.114 3.886 15 H 0.045 0.955 16 C 0.068 3.932 17 N -0.552 5.552 18 C 0.026 3.974 19 C 0.059 3.941 20 C 0.058 3.942 21 N -0.540 5.540 22 C 0.035 3.965 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.328 0.672 27 H -0.041 1.041 28 H -0.007 1.007 29 H 0.263 0.737 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.020 0.980 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 -7.569 16.212 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 H 0.075 0.925 4 N -0.290 5.290 5 C 0.089 3.911 6 C -0.566 4.566 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.794 3.206 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.205 1.205 14 C 0.005 3.995 15 H 0.063 0.937 16 C -0.060 4.060 17 N -0.277 5.277 18 C -0.122 4.122 19 C -0.069 4.069 20 C -0.070 4.070 21 N -0.265 5.265 22 C -0.113 4.113 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.145 0.855 27 H -0.024 1.024 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.179 -7.359 16.266 17.855 hybrid contribution -0.644 0.272 -1.378 1.545 sum -0.823 -7.087 14.888 16.509 Atomic orbital electron populations 1.22434 0.96279 1.02336 1.02047 1.21623 0.92930 0.96961 0.91090 0.92549 1.60537 1.55945 1.09152 1.03399 1.19115 0.92436 0.91453 0.88093 1.21562 1.43218 0.97006 0.94774 0.92237 1.25896 0.95753 0.95751 1.02232 1.70096 1.50111 1.10629 1.26722 0.85339 0.77900 0.78845 0.78526 1.18909 1.20285 1.20507 1.21530 0.87375 0.95612 0.95018 0.93703 1.22100 0.99433 0.93204 0.91253 1.62235 1.09020 1.16378 1.40026 1.22393 1.01344 0.87486 1.00999 1.22181 0.87337 0.96313 1.01079 1.22206 1.00032 0.93956 0.90792 1.61924 1.08484 1.15807 1.40243 1.22236 1.00577 0.88548 0.99953 0.94337 0.91473 0.90551 0.85482 1.02387 0.98858 0.92774 0.89831 0.94845 0.96145 0.89878 0.90688 0.95493 0.88376 0.89575 0.94284 0.90930 0.93414 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.26 8.70 71.98 0.63 -4.63 16 2 C 0.09 3.04 1.94 44.92 0.09 3.13 16 3 H 0.06 2.22 5.97 -2.39 -0.01 2.20 16 4 N -0.66 -28.70 5.56 -495.59 -2.76 -31.45 16 5 C 0.22 11.78 5.24 85.56 0.45 12.23 16 6 C -0.53 -30.70 9.32 25.60 0.24 -30.46 16 7 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 8 C 0.00 0.08 5.46 84.65 0.46 0.55 16 9 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 10 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 11 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.11 3.48 1.84 44.92 0.08 3.56 16 15 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 16 C 0.07 1.92 4.28 86.31 0.37 2.29 16 17 N -0.55 -13.45 4.97 -921.93 -4.58 -18.03 16 18 C 0.03 0.50 9.60 127.69 1.23 1.72 16 19 C 0.06 1.39 5.62 86.31 0.49 1.88 16 20 C 0.06 1.45 5.62 86.31 0.48 1.94 16 21 N -0.54 -17.00 4.65 -896.53 -4.17 -21.17 16 22 C 0.03 1.07 9.06 127.69 1.16 2.23 16 23 H 0.04 1.33 7.61 -2.39 -0.02 1.31 16 24 H 0.07 1.88 6.72 -2.39 -0.02 1.86 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.33 13.80 7.59 -89.69 -0.68 13.12 16 27 H -0.04 -2.41 7.55 -2.39 -0.02 -2.43 16 28 H -0.01 -0.40 8.05 -2.39 -0.02 -0.42 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.08 2.13 6.70 -2.39 -0.02 2.12 16 31 H 0.03 1.11 7.09 -2.38 -0.02 1.09 16 32 H 0.02 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 34 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.10 1.80 8.13 -2.39 -0.02 1.78 16 37 H 0.09 1.94 8.10 -2.39 -0.02 1.92 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 40 H 0.05 1.76 6.37 -2.39 -0.02 1.74 16 41 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -65.22 315.23 -3.23 -68.45 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.30 Total: 17.55 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.67 Total: -5.58 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -11.22 Total: -127.72 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.22 -3.23 -68.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.125 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds