Wall clock time and date at job start Mon Mar 30 2020 04:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47006 * 2 1 4 4 C 1.53004 * 109.47006 * 240.00755 * 2 1 3 5 5 C 1.50697 * 109.47040 * 174.99533 * 4 2 1 6 6 H 1.07994 * 120.00487 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00004 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00137 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00328 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46917 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47125 * 120.00159 * 9 7 5 12 12 H 1.48499 * 109.47450 * 240.00503 * 9 7 5 13 13 N 1.46893 * 109.47856 * 120.00139 * 2 1 3 14 14 C 1.46965 * 110.99939 * 55.65849 * 13 2 1 15 15 C 1.53046 * 109.36731 * 176.81503 * 14 13 2 16 16 N 1.46958 * 109.36420 * 58.39890 * 15 14 13 17 17 C 1.46902 * 110.99907 * 176.81188 * 16 15 14 18 18 C 1.46955 * 110.88038 * 300.68290 * 16 15 14 19 19 C 1.46961 * 111.00188 * 291.86416 * 13 2 1 20 20 H 1.08993 * 109.48805 * 63.19070 * 19 13 2 21 21 C 1.53000 * 109.48435 * 303.15133 * 19 13 2 22 22 N 1.46897 * 109.47064 * 176.65631 * 21 19 13 23 23 H 1.09003 * 109.47173 * 299.99564 * 1 2 3 24 24 H 1.08994 * 109.47465 * 59.99476 * 1 2 3 25 25 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46624 * 294.99287 * 4 2 1 27 27 H 1.09001 * 109.47392 * 54.99581 * 4 2 1 28 28 H 0.96997 * 120.00669 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.48317 * 296.78375 * 14 13 2 30 30 H 1.08997 * 109.48634 * 56.82079 * 14 13 2 31 31 H 1.08996 * 109.48716 * 178.36803 * 15 14 13 32 32 H 1.08998 * 109.48765 * 298.41362 * 15 14 13 33 33 H 1.09001 * 109.47044 * 63.95191 * 17 16 15 34 34 H 1.08997 * 109.47392 * 183.95924 * 17 16 15 35 35 H 1.09007 * 109.47270 * 303.95918 * 17 16 15 36 36 H 1.09002 * 109.48888 * 299.34460 * 18 16 15 37 37 H 1.09004 * 109.48236 * 179.29059 * 18 16 15 38 38 H 1.08996 * 109.47115 * 56.65280 * 21 19 13 39 39 H 1.08997 * 109.47322 * 296.65188 * 21 19 13 40 40 H 1.00901 * 111.00072 * 173.82842 * 22 21 19 41 41 H 1.00902 * 110.99750 * 297.78120 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6147 -1.3129 6 1 4.0789 -0.0860 -0.5394 7 6 4.2303 -1.1931 -2.3581 8 7 3.5763 -1.8374 -3.2998 9 14 6.0919 -1.0606 -2.4373 10 1 6.5836 -0.2904 -1.2667 11 1 6.6863 -2.4214 -2.4189 12 1 6.4860 -0.3652 -3.6888 13 7 2.0198 -0.6925 1.1993 14 6 1.4657 -2.0509 1.2863 15 6 2.0603 -2.7646 2.5026 16 7 1.7543 -1.9953 3.7168 17 6 2.2441 -2.6878 4.9162 18 6 2.3084 -0.6370 3.6297 19 6 1.7137 0.0768 2.4136 20 1 0.6330 0.1565 2.5307 21 6 2.3192 1.4770 2.2968 22 7 1.9458 2.2717 3.4745 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -1.7714 -1.2057 27 1 1.6053 -0.2615 -2.1371 28 1 4.0606 -2.2440 -4.0353 29 1 0.3821 -1.9955 1.3909 30 1 1.7158 -2.6043 0.3812 31 1 1.6289 -3.7621 2.5857 32 1 3.1410 -2.8443 2.3850 33 1 3.3315 -2.7533 4.8794 34 1 1.9433 -2.1326 5.8046 35 1 1.8208 -3.6917 4.9545 36 1 3.3920 -0.6922 3.5252 37 1 2.0579 -0.0835 4.5348 38 1 1.9420 1.9620 1.3966 39 1 3.4050 1.3998 2.2401 40 1 2.4144 3.1653 3.4711 41 1 0.9450 2.3884 3.5293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:05 Heat of formation + Delta-G solvation = 12.641010 kcal Electronic energy + Delta-G solvation = -18909.483501 eV Core-core repulsion = 16245.217582 eV Total energy + Delta-G solvation = -2664.265919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.44774 -36.10930 -34.67238 -32.68004 -30.80365 -30.10567 -27.38799 -26.94477 -25.07025 -23.66380 -22.95435 -21.08314 -20.02186 -18.41545 -16.22114 -16.14174 -15.47259 -15.13715 -14.70212 -14.48091 -14.31090 -13.99998 -13.48496 -13.35696 -12.96388 -12.35067 -12.22505 -12.00183 -11.89029 -11.64099 -11.45050 -11.15251 -11.05349 -10.86218 -10.58817 -10.50061 -10.28322 -10.15966 -9.82231 -9.15379 -8.96351 -8.49837 -8.25303 -8.09399 -7.42310 -5.89405 -3.87038 3.36813 3.44541 3.49755 4.21286 4.34644 4.55723 4.93493 5.21142 5.26086 5.42766 5.47594 5.51828 5.62729 5.74058 5.77574 5.81897 5.86871 5.94207 5.94593 6.00523 6.06938 6.15241 6.28958 6.31059 6.41251 6.56663 6.64439 6.72888 7.01126 7.16118 7.29209 7.31847 7.47870 7.57498 7.71844 7.93805 8.04753 8.12842 8.58078 9.19152 9.74713 11.22585 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.007676 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.068284 B = 3646.652614 C = 3867.778013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.073 0.927 4 C 0.030 3.970 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.903 5.903 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.507 5.507 14 C 0.060 3.940 15 C 0.056 3.944 16 N -0.549 5.549 17 C 0.028 3.972 18 C 0.075 3.925 19 C 0.090 3.910 20 H 0.039 0.961 21 C 0.065 3.935 22 N -0.850 5.850 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.257 0.743 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.023 0.977 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.340 0.660 41 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 2.938 13.086 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.091 0.909 4 C -0.007 4.007 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.232 5.232 14 C -0.068 4.068 15 C -0.072 4.072 16 N -0.274 5.274 17 C -0.121 4.121 18 C -0.053 4.053 19 C -0.020 4.020 20 H 0.057 0.943 21 C -0.067 4.067 22 N -0.379 5.379 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.485 2.239 13.349 14.259 hybrid contribution 0.665 0.623 -0.885 1.270 sum -3.820 2.862 12.464 13.347 Atomic orbital electron populations 1.22505 0.99841 1.01455 1.00438 1.22003 0.90043 0.98649 0.91910 0.90923 1.19207 0.96343 0.95385 0.89806 1.21194 0.91790 1.32835 1.06838 0.92194 1.25001 0.97920 0.95925 0.96032 1.69969 1.35081 1.37034 1.12367 0.86604 0.86576 0.77567 0.77631 1.19841 1.21347 1.21403 1.62242 1.58659 1.01507 1.00784 1.22140 0.96259 0.90568 0.97859 1.22204 0.99405 0.96301 0.89262 1.62198 1.59316 1.03211 1.02627 1.22292 0.97669 0.98983 0.93134 1.22058 0.96976 0.88217 0.98075 1.21515 0.97234 0.92473 0.90777 0.94313 1.21876 1.01439 0.92865 0.90476 1.58654 1.12773 1.22320 1.44177 0.94278 0.92695 0.92730 0.96247 0.96426 0.93385 0.94898 0.88884 0.91128 0.93889 0.95889 0.91804 0.91841 0.94549 0.90074 0.94450 0.90226 0.84835 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.46 37.15 0.31 -2.89 16 2 C 0.08 1.65 2.01 -67.72 -0.14 1.51 16 3 H 0.07 1.48 5.75 -51.92 -0.30 1.19 16 4 C 0.03 0.74 4.34 -27.88 -0.12 0.62 16 5 C -0.49 -13.56 8.84 -34.44 -0.30 -13.86 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 9 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.51 -9.68 4.21 -218.57 -0.92 -10.60 16 14 C 0.06 1.10 4.78 -3.76 -0.02 1.08 16 15 C 0.06 0.92 5.62 -3.77 -0.02 0.90 16 16 N -0.55 -8.35 4.97 -242.76 -1.21 -9.55 16 17 C 0.03 0.34 9.60 60.07 0.58 0.92 16 18 C 0.07 1.16 4.75 -3.77 -0.02 1.15 16 19 C 0.09 1.45 1.93 -67.66 -0.13 1.32 16 20 H 0.04 0.65 6.69 -51.93 -0.35 0.30 16 21 C 0.06 0.96 5.97 -3.83 -0.02 0.94 16 22 N -0.85 -9.95 9.01 -10.37 -0.09 -10.04 16 23 H 0.04 0.62 6.69 -51.93 -0.35 0.27 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.96 6.41 -51.93 -0.33 0.63 16 26 H 0.02 0.52 6.21 -51.93 -0.32 0.19 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.03 0.59 6.43 -51.93 -0.33 0.25 16 30 H 0.09 1.92 6.17 -51.93 -0.32 1.60 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.19 7.76 -51.93 -0.40 0.79 16 38 H 0.04 0.58 6.00 -51.93 -0.31 0.27 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.34 3.37 9.08 -39.29 -0.36 3.01 16 41 H 0.34 3.54 9.06 -39.29 -0.36 3.18 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -29.70 309.65 -8.89 -38.58 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.07 Total: 3.25 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 0.02 Total: -6.95 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -1.48 Total: -56.59 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.70 -8.89 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.226 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds