Wall clock time and date at job start Mon Mar 30 2020 04:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47006 * 2 1 4 4 C 1.53004 * 109.47006 * 240.00755 * 2 1 3 5 5 C 1.50697 * 109.47040 * 174.99533 * 4 2 1 6 6 H 1.07994 * 120.00487 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00004 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00137 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00328 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46917 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47125 * 120.00159 * 9 7 5 12 12 H 1.48499 * 109.47450 * 240.00503 * 9 7 5 13 13 N 1.46893 * 109.47856 * 120.00139 * 2 1 3 14 14 C 1.46965 * 110.99939 * 55.65849 * 13 2 1 15 15 C 1.53046 * 109.36731 * 176.81503 * 14 13 2 16 16 N 1.46958 * 109.36420 * 58.39890 * 15 14 13 17 17 C 1.46902 * 110.99907 * 176.81188 * 16 15 14 18 18 C 1.46955 * 110.88038 * 300.68290 * 16 15 14 19 19 C 1.46961 * 111.00188 * 291.86416 * 13 2 1 20 20 H 1.08993 * 109.48805 * 63.19070 * 19 13 2 21 21 C 1.53000 * 109.48435 * 303.15133 * 19 13 2 22 22 N 1.46897 * 109.47064 * 176.65631 * 21 19 13 23 23 H 1.09003 * 109.47173 * 299.99564 * 1 2 3 24 24 H 1.08994 * 109.47465 * 59.99476 * 1 2 3 25 25 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46624 * 294.99287 * 4 2 1 27 27 H 1.09001 * 109.47392 * 54.99581 * 4 2 1 28 28 H 0.96997 * 120.00669 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.48317 * 296.78375 * 14 13 2 30 30 H 1.08997 * 109.48634 * 56.82079 * 14 13 2 31 31 H 1.08996 * 109.48716 * 178.36803 * 15 14 13 32 32 H 1.08998 * 109.48765 * 298.41362 * 15 14 13 33 33 H 1.09001 * 109.47044 * 63.95191 * 17 16 15 34 34 H 1.08997 * 109.47392 * 183.95924 * 17 16 15 35 35 H 1.09007 * 109.47270 * 303.95918 * 17 16 15 36 36 H 1.09002 * 109.48888 * 299.34460 * 18 16 15 37 37 H 1.09004 * 109.48236 * 179.29059 * 18 16 15 38 38 H 1.08996 * 109.47115 * 56.65280 * 21 19 13 39 39 H 1.08997 * 109.47322 * 296.65188 * 21 19 13 40 40 H 1.00901 * 111.00072 * 173.82842 * 22 21 19 41 41 H 1.00902 * 110.99750 * 297.78120 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6147 -1.3129 6 1 4.0789 -0.0860 -0.5394 7 6 4.2303 -1.1931 -2.3581 8 7 3.5763 -1.8374 -3.2998 9 14 6.0919 -1.0606 -2.4373 10 1 6.5836 -0.2904 -1.2667 11 1 6.6863 -2.4214 -2.4189 12 1 6.4860 -0.3652 -3.6888 13 7 2.0198 -0.6925 1.1993 14 6 1.4657 -2.0509 1.2863 15 6 2.0603 -2.7646 2.5026 16 7 1.7543 -1.9953 3.7168 17 6 2.2441 -2.6878 4.9162 18 6 2.3084 -0.6370 3.6297 19 6 1.7137 0.0768 2.4136 20 1 0.6330 0.1565 2.5307 21 6 2.3192 1.4770 2.2968 22 7 1.9458 2.2717 3.4745 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -1.7714 -1.2057 27 1 1.6053 -0.2615 -2.1371 28 1 4.0606 -2.2440 -4.0353 29 1 0.3821 -1.9955 1.3909 30 1 1.7158 -2.6043 0.3812 31 1 1.6289 -3.7621 2.5857 32 1 3.1410 -2.8443 2.3850 33 1 3.3315 -2.7533 4.8794 34 1 1.9433 -2.1326 5.8046 35 1 1.8208 -3.6917 4.9545 36 1 3.3920 -0.6922 3.5252 37 1 2.0579 -0.0835 4.5348 38 1 1.9420 1.9620 1.3966 39 1 3.4050 1.3998 2.2401 40 1 2.4144 3.1653 3.4711 41 1 0.9450 2.3884 3.5293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:04 Heat of formation + Delta-G solvation = -10.689999 kcal Electronic energy + Delta-G solvation = -18910.495209 eV Core-core repulsion = 16245.217582 eV Total energy + Delta-G solvation = -2665.277628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84040 -37.49674 -35.92984 -34.69306 -32.38320 -31.36033 -29.28794 -28.21400 -26.29392 -25.24627 -24.67006 -22.38019 -21.53428 -19.87447 -18.36429 -17.50688 -16.77676 -16.56737 -16.22325 -15.90710 -15.65349 -15.36078 -14.87850 -14.64421 -14.54424 -13.92041 -13.79460 -13.42306 -13.29244 -13.11225 -13.00613 -12.70754 -12.48576 -12.44887 -12.34025 -12.19792 -11.86910 -11.68025 -11.34842 -11.08367 -10.93311 -10.48429 -9.53918 -9.32521 -8.90160 -8.10533 -6.14778 1.38805 1.40364 1.52750 2.45998 2.98053 3.02906 3.25062 3.76402 3.97199 4.03462 4.10449 4.29856 4.36030 4.37999 4.45300 4.47845 4.55364 4.62347 4.65395 4.77967 4.88824 4.94873 4.97208 4.99686 5.02281 5.13416 5.15697 5.21323 5.35984 5.49734 5.70534 5.90022 6.05359 6.11510 6.20348 6.33521 6.43673 6.55628 6.66297 6.99131 7.50903 9.01684 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.007676 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.068284 B = 3646.652614 C = 3867.778013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.071 0.929 4 C 0.036 3.964 5 C -0.495 4.495 6 H 0.056 0.944 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.526 5.526 14 C 0.064 3.936 15 C 0.063 3.937 16 N -0.551 5.551 17 C 0.027 3.973 18 C 0.082 3.918 19 C 0.094 3.906 20 H 0.043 0.957 21 C 0.074 3.926 22 N -0.842 5.842 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.050 0.950 26 H -0.003 1.003 27 H -0.009 1.009 28 H 0.258 0.742 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.023 0.977 33 H 0.020 0.980 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.017 0.983 37 H 0.097 0.903 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.352 0.648 41 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 3.592 15.104 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 H 0.089 0.911 4 C -0.001 4.001 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.207 1.207 13 N -0.251 5.251 14 C -0.064 4.064 15 C -0.065 4.065 16 N -0.276 5.276 17 C -0.121 4.121 18 C -0.046 4.046 19 C -0.016 4.016 20 H 0.061 0.939 21 C -0.058 4.058 22 N -0.374 5.374 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.016 0.984 27 H 0.010 0.990 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.166 0.834 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.571 2.911 15.392 16.318 hybrid contribution 0.666 0.419 -1.478 1.674 sum -3.905 3.330 13.914 14.830 Atomic orbital electron populations 1.22362 0.97505 1.01597 1.01695 1.21694 0.91833 0.97680 0.90431 0.91066 1.19057 0.95172 0.94425 0.91430 1.21479 0.93222 1.32188 1.06446 0.92612 1.25810 1.02584 0.95745 0.95818 1.70091 1.36901 1.38097 1.13068 0.85579 0.81031 0.77603 0.77888 1.19117 1.21057 1.20719 1.62142 1.59379 1.02087 1.01499 1.22027 0.96737 0.90181 0.97484 1.22107 0.98051 0.97173 0.89178 1.62233 1.59335 1.03093 1.02921 1.22386 0.97575 0.99803 0.92306 1.22000 0.95709 0.88718 0.98177 1.21552 0.97525 0.92873 0.89605 0.93920 1.21651 1.00084 0.92610 0.91426 1.58568 1.13756 1.22910 1.42139 0.91955 0.92424 0.93126 0.98442 0.99026 0.93297 0.94160 0.92159 0.89188 0.95891 0.96182 0.90074 0.90399 0.96425 0.88525 0.95223 0.92090 0.83407 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 8.46 71.98 0.61 -5.27 16 2 C 0.09 3.72 2.01 44.92 0.09 3.81 16 3 H 0.07 2.91 5.75 -2.38 -0.01 2.89 16 4 C 0.04 1.89 4.34 29.85 0.13 2.02 16 5 C -0.49 -28.09 8.84 25.60 0.23 -27.87 16 6 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 9 Si 0.95 45.76 29.54 68.60 2.03 47.78 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.53 -20.02 4.21 -845.42 -3.55 -23.57 16 14 C 0.06 2.35 4.78 86.31 0.41 2.77 16 15 C 0.06 2.02 5.62 86.31 0.49 2.50 16 16 N -0.55 -15.62 4.97 -921.95 -4.58 -20.20 16 17 C 0.03 0.60 9.60 127.69 1.23 1.83 16 18 C 0.08 2.41 4.75 86.31 0.41 2.82 16 19 C 0.09 2.90 1.93 44.92 0.09 2.99 16 20 H 0.04 1.32 6.69 -2.39 -0.02 1.30 16 21 C 0.07 2.10 5.97 86.30 0.52 2.61 16 22 N -0.84 -17.60 9.01 -186.73 -1.68 -19.28 16 23 H 0.06 1.83 6.69 -2.39 -0.02 1.81 16 24 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.05 1.75 6.41 -2.39 -0.02 1.73 16 26 H 0.00 -0.15 6.21 -2.39 -0.01 -0.16 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.04 1.41 6.43 -2.38 -0.02 1.40 16 30 H 0.06 2.60 6.17 -2.39 -0.01 2.58 16 31 H 0.09 2.49 8.13 -2.39 -0.02 2.47 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.51 8.13 -2.38 -0.02 1.49 16 36 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 2.55 7.76 -2.38 -0.02 2.53 16 38 H 0.03 0.88 6.00 -2.39 -0.01 0.87 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.35 6.09 9.08 -89.69 -0.81 5.28 16 41 H 0.35 6.24 9.06 -89.69 -0.81 5.43 16 Total: -1.00 -64.04 309.65 -3.46 -67.50 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.61 Total: 16.74 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.65 Total: -11.55 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -9.53 Total: -120.48 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -64.04 -3.46 -67.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.809 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds