Wall clock time and date at job start Mon Mar 30 2020 04:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47702 * 2 1 4 4 C 1.53003 * 109.47206 * 239.99854 * 2 1 3 5 5 C 1.50700 * 109.47229 * 168.70324 * 4 2 1 6 6 H 1.08001 * 119.99808 * 353.45361 * 5 4 2 7 7 C 1.37876 * 119.99916 * 173.45852 * 5 4 2 8 8 N 1.31514 * 119.99940 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00012 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46909 * 60.00613 * 9 7 5 11 11 H 1.48507 * 109.47113 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47655 * 300.00046 * 9 7 5 13 13 N 1.46901 * 109.47443 * 120.00107 * 2 1 3 14 14 C 1.46958 * 111.00381 * 78.33262 * 13 2 1 15 15 C 1.53051 * 109.36700 * 183.19096 * 14 13 2 16 16 N 1.46953 * 109.36474 * 301.60260 * 15 14 13 17 17 C 1.46900 * 110.99862 * 183.18808 * 16 15 14 18 18 C 1.46955 * 110.88349 * 59.31973 * 16 15 14 19 19 C 1.46955 * 111.00511 * 202.13825 * 13 2 1 20 20 H 1.09002 * 109.48878 * 296.77935 * 19 13 2 21 21 C 1.53006 * 109.48765 * 56.84080 * 19 13 2 22 22 N 1.46899 * 109.47094 * 53.68859 * 21 19 13 23 23 H 1.08998 * 109.47210 * 64.88418 * 1 2 3 24 24 H 1.08997 * 109.47590 * 184.89125 * 1 2 3 25 25 H 1.09004 * 109.47139 * 304.88812 * 1 2 3 26 26 H 1.09000 * 109.46717 * 48.70181 * 4 2 1 27 27 H 1.09005 * 109.46787 * 288.70427 * 4 2 1 28 28 H 0.96996 * 120.00444 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.48567 * 303.16415 * 14 13 2 30 30 H 1.09001 * 109.48179 * 63.22398 * 14 13 2 31 31 H 1.09001 * 109.48488 * 61.56658 * 15 14 13 32 32 H 1.08997 * 109.48711 * 181.61384 * 15 14 13 33 33 H 1.09000 * 109.46859 * 63.95579 * 17 16 15 34 34 H 1.09000 * 109.47068 * 183.95347 * 17 16 15 35 35 H 1.08997 * 109.46967 * 303.94966 * 17 16 15 36 36 H 1.09000 * 109.49126 * 60.64570 * 18 16 15 37 37 H 1.09000 * 109.49327 * 180.71259 * 18 16 15 38 38 H 1.09000 * 109.46950 * 173.69088 * 21 19 13 39 39 H 1.08999 * 109.46760 * 293.68524 * 21 19 13 40 40 H 1.00894 * 110.99911 * 61.60200 * 22 21 19 41 41 H 1.00898 * 110.99857 * 185.55261 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5210 -0.4849 -1.3964 6 1 4.0264 0.2031 -0.7347 7 6 4.2309 -1.1468 -2.3757 8 7 3.6155 -1.9848 -3.1810 9 14 6.0665 -0.8532 -2.5585 10 1 6.7560 -1.2306 -1.2986 11 1 6.5910 -1.6790 -3.6757 12 1 6.3120 0.5828 -2.8462 13 7 2.0197 -0.6925 1.1994 14 6 1.9337 -2.1506 1.0378 15 6 2.3770 -2.8321 2.3345 16 7 3.7507 -2.4208 2.6561 17 6 4.2404 -3.1133 3.8556 18 6 3.8367 -0.9627 2.8179 19 6 3.3934 -0.2813 1.5211 20 1 4.0600 -0.5742 0.7100 21 6 3.4429 1.2375 1.6998 22 7 2.4364 1.6473 2.6882 23 1 -0.3633 0.4362 -0.9305 24 1 -0.3634 -1.0239 0.0876 25 1 -0.3634 0.5878 0.8430 26 1 1.5216 -0.3370 -2.1277 27 1 1.8503 -1.7905 -1.1543 28 1 4.1148 -2.4502 -3.8702 29 1 0.9049 -2.4315 0.8126 30 1 2.5838 -2.4648 0.2212 31 1 1.7104 -2.5390 3.1456 32 1 2.3414 -3.9140 2.2073 33 1 4.2954 -4.1841 3.6598 34 1 5.2316 -2.7393 4.1118 35 1 3.5574 -2.9301 4.6851 36 1 3.1866 -0.6484 3.6344 37 1 4.8655 -0.6817 3.0430 38 1 4.4337 1.5303 2.0473 39 1 3.2343 1.7225 0.7462 40 1 2.6230 1.2313 3.5882 41 1 2.3865 2.6527 2.7579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:08 Heat of formation + Delta-G solvation = 21.640665 kcal Electronic energy + Delta-G solvation = -19393.221039 eV Core-core repulsion = 16729.345374 eV Total energy + Delta-G solvation = -2663.875665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.28479 -35.99157 -34.34466 -32.50950 -30.73920 -29.81930 -27.33196 -26.88962 -25.06051 -23.45169 -22.86425 -20.97515 -19.76735 -17.98142 -16.46752 -15.92184 -15.34424 -14.98535 -14.54964 -14.30363 -14.18614 -13.75219 -13.54469 -12.99525 -12.50087 -12.36403 -12.03423 -11.87636 -11.79022 -11.46440 -11.25267 -11.05799 -10.92946 -10.64779 -10.57975 -10.42110 -10.05884 -9.86053 -9.60607 -9.22441 -8.87860 -8.30362 -8.17286 -7.91938 -6.96288 -5.96606 -3.96837 3.34436 3.38967 3.41263 4.32206 4.48202 4.76242 5.12540 5.33582 5.36726 5.39505 5.59972 5.65418 5.76644 5.81181 5.95799 5.97018 6.02473 6.03942 6.17522 6.25855 6.37156 6.41846 6.45736 6.61863 6.89147 6.95275 6.98187 6.99357 7.26499 7.41182 7.44789 7.53353 7.67052 7.76692 7.83590 7.99171 8.21144 8.29811 8.45554 9.07115 9.64959 11.14237 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.010276 C = 0.009042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.745781 B = 2724.142131 C = 3096.049573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.082 3.918 3 H 0.070 0.930 4 C -0.011 4.011 5 C -0.516 4.516 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.499 5.499 14 C 0.048 3.952 15 C 0.063 3.937 16 N -0.539 5.539 17 C 0.028 3.972 18 C 0.066 3.934 19 C 0.071 3.929 20 H 0.097 0.903 21 C 0.069 3.931 22 N -0.829 5.829 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.009 0.991 27 H 0.031 0.969 28 H 0.259 0.741 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.032 0.968 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.081 0.919 40 H 0.331 0.669 41 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 2.061 12.346 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.025 4.025 3 H 0.088 0.912 4 C -0.049 4.049 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.224 5.224 14 C -0.080 4.080 15 C -0.065 4.065 16 N -0.264 5.264 17 C -0.121 4.121 18 C -0.062 4.062 19 C -0.038 4.038 20 H 0.115 0.885 21 C -0.062 4.062 22 N -0.357 5.357 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.099 0.901 40 H 0.143 0.857 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.482 1.559 11.709 11.905 hybrid contribution 1.929 0.453 0.312 2.006 sum 0.448 2.012 12.021 12.196 Atomic orbital electron populations 1.21722 0.96840 1.00487 0.99841 1.21742 0.93059 0.98194 0.89546 0.91156 1.19865 0.95756 0.96939 0.92367 1.21252 0.93680 1.24959 1.15453 0.92253 1.24966 0.97847 0.95270 0.95886 1.69946 1.35822 1.27892 1.19442 0.86808 0.86338 0.78049 0.77768 1.20082 1.21425 1.20426 1.62423 1.19780 1.04282 1.35896 1.22193 1.00531 0.89266 0.96059 1.22167 0.87517 0.98982 0.97810 1.62053 1.22978 1.06350 1.34982 1.22315 0.99434 0.99426 0.90905 1.22186 0.99164 0.87152 0.97737 1.22043 0.92621 0.92289 0.96896 0.88527 1.21874 0.91559 0.96181 0.96579 1.58562 1.53150 1.12335 1.11686 0.93674 0.93915 0.93400 0.97233 0.95053 0.93095 0.91598 0.91153 0.95121 0.91428 0.91750 0.92017 0.96275 0.94979 0.91945 0.96452 0.90109 0.85657 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.37 37.15 0.35 -2.09 16 2 C 0.08 1.72 2.33 -67.71 -0.16 1.56 16 3 H 0.07 1.51 5.40 -51.93 -0.28 1.23 16 4 C -0.01 -0.29 3.97 -27.88 -0.11 -0.40 16 5 C -0.52 -13.83 7.08 -34.44 -0.24 -14.07 16 6 H 0.06 1.54 5.12 -52.49 -0.27 1.27 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.47 13.28 55.43 0.74 -25.73 16 9 Si 0.88 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.50 -9.65 4.09 -218.56 -0.89 -10.54 16 14 C 0.05 0.94 4.40 -3.77 -0.02 0.93 16 15 C 0.06 1.07 5.62 -3.77 -0.02 1.05 16 16 N -0.54 -9.18 4.97 -242.76 -1.21 -10.38 16 17 C 0.03 0.37 9.63 60.06 0.58 0.95 16 18 C 0.07 1.09 4.72 -3.77 -0.02 1.07 16 19 C 0.07 1.33 1.70 -67.65 -0.12 1.21 16 20 H 0.10 2.21 4.85 -51.93 -0.25 1.96 16 21 C 0.07 1.14 5.61 -3.82 -0.02 1.12 16 22 N -0.83 -11.70 9.27 -10.37 -0.10 -11.80 16 23 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 24 H 0.04 0.78 6.89 -51.93 -0.36 0.42 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.01 0.26 8.07 -51.93 -0.42 -0.16 16 27 H 0.03 0.85 5.69 -51.93 -0.30 0.55 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.07 1.26 6.87 -51.93 -0.36 0.90 16 30 H 0.07 1.68 6.03 -51.93 -0.31 1.37 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.03 0.51 6.77 -51.93 -0.35 0.15 16 37 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 1.47 5.92 -51.93 -0.31 1.16 16 40 H 0.33 4.33 7.47 -39.29 -0.29 4.03 16 41 H 0.33 3.91 9.08 -39.29 -0.36 3.56 16 LS Contribution 301.93 15.07 4.55 4.55 Total: -1.00 -29.07 301.93 -8.59 -37.66 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.78 Total: 6.73 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 0.13 Total: -7.03 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -1.46 Total: -58.45 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.07 -8.59 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.299 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds