Wall clock time and date at job start Mon Mar 30 2020 04:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47237 * 2 1 4 4 C 1.53002 * 109.46834 * 119.99620 * 2 1 3 5 5 C 1.50704 * 109.47473 * 184.99867 * 4 2 1 6 6 H 1.08004 * 119.99155 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00174 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99636 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00108 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47030 * 89.99645 * 9 7 5 11 11 H 1.48498 * 109.46792 * 209.99458 * 9 7 5 12 12 H 1.48494 * 109.47042 * 329.99514 * 9 7 5 13 13 N 1.46893 * 109.47340 * 239.99564 * 2 1 3 14 14 C 1.46958 * 111.00073 * 296.66319 * 13 2 1 15 15 C 1.53047 * 109.36346 * 183.18634 * 14 13 2 16 16 N 1.46959 * 109.36557 * 301.60116 * 15 14 13 17 17 C 1.46906 * 111.00044 * 183.18928 * 16 15 14 18 18 C 1.46953 * 110.88160 * 59.32528 * 16 15 14 19 19 C 1.46955 * 111.00015 * 60.46790 * 13 2 1 20 20 H 1.09000 * 109.50585 * 296.78784 * 19 13 2 21 21 C 1.52996 * 109.49115 * 56.84052 * 19 13 2 22 22 N 1.46897 * 109.47222 * 292.15184 * 21 19 13 23 23 H 1.08997 * 109.47237 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47286 * 300.00680 * 1 2 3 25 25 H 1.09006 * 109.46900 * 59.99972 * 1 2 3 26 26 H 1.09000 * 109.47541 * 305.00357 * 4 2 1 27 27 H 1.08996 * 109.47230 * 65.00127 * 4 2 1 28 28 H 0.97002 * 119.99728 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.48510 * 63.22396 * 14 13 2 30 30 H 1.08994 * 109.50826 * 303.16885 * 14 13 2 31 31 H 1.09002 * 109.49225 * 181.63494 * 15 14 13 32 32 H 1.09004 * 109.49221 * 61.57065 * 15 14 13 33 33 H 1.09000 * 109.46898 * 296.20228 * 17 16 15 34 34 H 1.09000 * 109.47085 * 56.19780 * 17 16 15 35 35 H 1.08990 * 109.47264 * 176.20247 * 17 16 15 36 36 H 1.09003 * 109.49293 * 180.71594 * 18 16 15 37 37 H 1.09000 * 109.51032 * 60.65426 * 18 16 15 38 38 H 1.08998 * 109.47192 * 52.15588 * 21 19 13 39 39 H 1.09002 * 109.47522 * 172.14954 * 21 19 13 40 40 H 1.00905 * 110.99713 * 179.97438 * 22 21 19 41 41 H 1.00897 * 111.00637 * 303.95415 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0855 0.5397 7 6 4.2302 -1.1926 2.3586 8 7 5.5409 -1.0994 2.4143 9 14 3.3012 -2.1076 3.6962 10 1 3.1705 -3.5378 3.3183 11 1 4.0445 -2.0000 4.9772 12 1 1.9502 -1.5124 3.8562 13 7 2.0197 -0.6925 -1.1993 14 6 1.6148 -2.1052 -1.1939 15 6 2.2099 -2.8083 -2.4162 16 7 1.7478 -2.1356 -3.6383 17 6 2.2375 -2.8282 -4.8378 18 6 2.1528 -0.7230 -3.6437 19 6 1.5577 -0.0198 -2.4214 20 1 0.4697 -0.0626 -2.4713 21 6 2.0107 1.4414 -2.4022 22 7 1.2960 2.1617 -1.3401 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6052 -0.2617 2.1370 27 1 1.7516 -1.7714 1.2057 28 1 6.0252 -1.5061 3.1497 29 1 0.5274 -2.1720 -1.2296 30 1 1.9789 -2.5848 -0.2854 31 1 1.8871 -3.8494 -2.4299 32 1 3.2980 -2.7653 -2.3666 33 1 3.3259 -2.7767 -4.8681 34 1 1.9239 -3.8717 -4.8083 35 1 1.8263 -2.3501 -5.7267 36 1 1.7882 -0.2436 -4.5523 37 1 3.2401 -0.6559 -3.6083 38 1 3.0833 1.4868 -2.2138 39 1 1.7913 1.9026 -3.3652 40 1 1.5784 3.1299 -1.3067 41 1 0.2972 2.0799 -1.4565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:11 Heat of formation + Delta-G solvation = 31.071162 kcal Electronic energy + Delta-G solvation = -19135.690200 eV Core-core repulsion = 16472.223472 eV Total energy + Delta-G solvation = -2663.466728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.51442 -36.28926 -34.33115 -32.44586 -31.08154 -30.14043 -27.86189 -26.91892 -24.86530 -23.51448 -22.72963 -21.07517 -19.92835 -18.29072 -16.44305 -16.08905 -15.56586 -15.09817 -14.81030 -14.41005 -14.25525 -13.95164 -13.52988 -13.35145 -12.70018 -12.42143 -12.15484 -12.07115 -11.93480 -11.71519 -11.53557 -11.22422 -11.12208 -10.82017 -10.60383 -10.34745 -10.12820 -9.81736 -9.65653 -9.31525 -8.93328 -8.33971 -8.16666 -7.87263 -7.26292 -5.81773 -3.74014 3.41240 3.48946 3.53146 4.10313 4.58061 4.62947 4.75116 5.19373 5.30306 5.42143 5.46769 5.53024 5.55551 5.62897 5.70631 5.84192 5.87089 5.90495 5.95579 6.01934 6.10397 6.15021 6.27051 6.35677 6.49170 6.60027 6.77987 6.92296 7.11897 7.21329 7.25321 7.33735 7.35450 7.59368 7.74042 8.00150 8.12370 8.20798 8.85841 9.33309 9.82891 11.32517 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.008460 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.159218 B = 3308.767208 C = 3827.987501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 H 0.138 0.862 4 C -0.013 4.013 5 C -0.481 4.481 6 H 0.078 0.922 7 C 0.058 3.942 8 N -0.912 5.912 9 Si 0.870 3.130 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.268 1.268 13 N -0.499 5.499 14 C 0.054 3.946 15 C 0.056 3.944 16 N -0.546 5.546 17 C 0.026 3.974 18 C 0.063 3.937 19 C 0.085 3.915 20 H 0.040 0.960 21 C 0.070 3.930 22 N -0.832 5.832 23 H 0.036 0.964 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.014 0.986 27 H 0.005 0.995 28 H 0.257 0.743 29 H 0.028 0.972 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.023 0.977 40 H 0.335 0.665 41 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 1.672 -12.507 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 H 0.155 0.845 4 C -0.050 4.050 5 C -0.519 4.519 6 H 0.096 0.904 7 C -0.140 4.140 8 N -0.553 5.553 9 Si 0.699 3.301 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.223 5.223 14 C -0.074 4.074 15 C -0.072 4.072 16 N -0.270 5.270 17 C -0.122 4.122 18 C -0.065 4.065 19 C -0.025 4.025 20 H 0.058 0.942 21 C -0.061 4.061 22 N -0.362 5.362 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.148 0.852 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.138 1.116 -11.909 15.053 hybrid contribution -0.810 -0.189 -0.002 0.831 sum -9.948 0.927 -11.911 15.546 Atomic orbital electron populations 1.22483 1.00730 0.99719 1.00235 1.22389 0.89486 1.02258 0.88764 0.84507 1.19810 0.97753 0.94626 0.92856 1.21104 0.89606 1.33023 1.08172 0.90354 1.25027 0.94630 0.96555 0.97807 1.69923 1.06385 1.46645 1.32334 0.86927 0.80514 0.80537 0.82131 1.20777 1.21797 1.19313 1.62315 1.58499 1.00587 1.00902 1.22179 0.96964 0.90569 0.97685 1.22228 0.98747 0.97130 0.89069 1.62176 1.59811 1.02485 1.02562 1.22314 0.97807 0.99176 0.92923 1.22117 0.98731 0.88353 0.97340 1.21612 0.96944 0.92767 0.91135 0.94228 1.21780 1.00331 0.92762 0.91271 1.59210 1.10248 1.17440 1.49327 0.94513 0.93219 0.93990 0.96797 0.97734 0.93290 0.95363 0.88951 0.91200 0.93614 0.95696 0.91683 0.91904 0.91441 0.93838 0.89703 0.95887 0.85179 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 7.92 37.16 0.29 -2.66 16 2 C 0.08 1.58 1.76 -67.72 -0.12 1.46 16 3 H 0.14 2.86 5.11 -51.93 -0.27 2.59 16 4 C -0.01 -0.32 3.22 -27.88 -0.09 -0.41 16 5 C -0.48 -13.83 9.39 -34.44 -0.32 -14.15 16 6 H 0.08 2.47 7.99 -52.48 -0.42 2.06 16 7 C 0.06 1.74 5.47 -17.82 -0.10 1.64 16 8 N -0.91 -28.85 13.96 55.43 0.77 -28.08 16 9 Si 0.87 22.42 27.47 -169.99 -4.67 17.76 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 13 N -0.50 -9.53 4.26 -218.57 -0.93 -10.47 16 14 C 0.05 1.01 4.84 -3.77 -0.02 0.99 16 15 C 0.06 0.92 5.62 -3.77 -0.02 0.90 16 16 N -0.55 -8.03 4.97 -242.75 -1.21 -9.24 16 17 C 0.03 0.31 9.60 60.07 0.58 0.89 16 18 C 0.06 0.92 4.90 -3.77 -0.02 0.90 16 19 C 0.09 1.33 1.93 -67.66 -0.13 1.20 16 20 H 0.04 0.63 6.48 -51.93 -0.34 0.30 16 21 C 0.07 0.97 6.09 -3.83 -0.02 0.95 16 22 N -0.83 -10.87 5.65 -10.37 -0.06 -10.93 16 23 H 0.04 0.64 6.55 -51.93 -0.34 0.30 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.63 4.52 -51.93 -0.23 0.39 16 26 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 27 H 0.00 0.11 5.44 -51.93 -0.28 -0.17 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.03 0.51 6.55 -51.93 -0.34 0.17 16 30 H 0.09 1.95 5.96 -51.93 -0.31 1.64 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.02 0.27 8.13 -51.93 -0.42 -0.16 16 40 H 0.34 3.71 9.08 -39.29 -0.36 3.36 16 41 H 0.34 3.94 7.00 -39.29 -0.28 3.67 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -31.52 299.38 -8.48 -40.00 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.93 Total: 4.74 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 0.03 Total: -8.28 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -1.42 Total: -58.72 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.52 -8.48 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.067 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds