Wall clock time and date at job start Mon Mar 30 2020 04:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47237 * 2 1 4 4 C 1.53002 * 109.46834 * 119.99620 * 2 1 3 5 5 C 1.50704 * 109.47473 * 184.99867 * 4 2 1 6 6 H 1.08004 * 119.99155 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00174 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99636 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00108 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47030 * 89.99645 * 9 7 5 11 11 H 1.48498 * 109.46792 * 209.99458 * 9 7 5 12 12 H 1.48494 * 109.47042 * 329.99514 * 9 7 5 13 13 N 1.46893 * 109.47340 * 239.99564 * 2 1 3 14 14 C 1.46958 * 111.00073 * 296.66319 * 13 2 1 15 15 C 1.53047 * 109.36346 * 183.18634 * 14 13 2 16 16 N 1.46959 * 109.36557 * 301.60116 * 15 14 13 17 17 C 1.46906 * 111.00044 * 183.18928 * 16 15 14 18 18 C 1.46953 * 110.88160 * 59.32528 * 16 15 14 19 19 C 1.46955 * 111.00015 * 60.46790 * 13 2 1 20 20 H 1.09000 * 109.50585 * 296.78784 * 19 13 2 21 21 C 1.52996 * 109.49115 * 56.84052 * 19 13 2 22 22 N 1.46897 * 109.47222 * 292.15184 * 21 19 13 23 23 H 1.08997 * 109.47237 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47286 * 300.00680 * 1 2 3 25 25 H 1.09006 * 109.46900 * 59.99972 * 1 2 3 26 26 H 1.09000 * 109.47541 * 305.00357 * 4 2 1 27 27 H 1.08996 * 109.47230 * 65.00127 * 4 2 1 28 28 H 0.97002 * 119.99728 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.48510 * 63.22396 * 14 13 2 30 30 H 1.08994 * 109.50826 * 303.16885 * 14 13 2 31 31 H 1.09002 * 109.49225 * 181.63494 * 15 14 13 32 32 H 1.09004 * 109.49221 * 61.57065 * 15 14 13 33 33 H 1.09000 * 109.46898 * 296.20228 * 17 16 15 34 34 H 1.09000 * 109.47085 * 56.19780 * 17 16 15 35 35 H 1.08990 * 109.47264 * 176.20247 * 17 16 15 36 36 H 1.09003 * 109.49293 * 180.71594 * 18 16 15 37 37 H 1.09000 * 109.51032 * 60.65426 * 18 16 15 38 38 H 1.08998 * 109.47192 * 52.15588 * 21 19 13 39 39 H 1.09002 * 109.47522 * 172.14954 * 21 19 13 40 40 H 1.00905 * 110.99713 * 179.97438 * 22 21 19 41 41 H 1.00897 * 111.00637 * 303.95415 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0855 0.5397 7 6 4.2302 -1.1926 2.3586 8 7 5.5409 -1.0994 2.4143 9 14 3.3012 -2.1076 3.6962 10 1 3.1705 -3.5378 3.3183 11 1 4.0445 -2.0000 4.9772 12 1 1.9502 -1.5124 3.8562 13 7 2.0197 -0.6925 -1.1993 14 6 1.6148 -2.1052 -1.1939 15 6 2.2099 -2.8083 -2.4162 16 7 1.7478 -2.1356 -3.6383 17 6 2.2375 -2.8282 -4.8378 18 6 2.1528 -0.7230 -3.6437 19 6 1.5577 -0.0198 -2.4214 20 1 0.4697 -0.0626 -2.4713 21 6 2.0107 1.4414 -2.4022 22 7 1.2960 2.1617 -1.3401 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6052 -0.2617 2.1370 27 1 1.7516 -1.7714 1.2057 28 1 6.0252 -1.5061 3.1497 29 1 0.5274 -2.1720 -1.2296 30 1 1.9789 -2.5848 -0.2854 31 1 1.8871 -3.8494 -2.4299 32 1 3.2980 -2.7653 -2.3666 33 1 3.3259 -2.7767 -4.8681 34 1 1.9239 -3.8717 -4.8083 35 1 1.8263 -2.3501 -5.7267 36 1 1.7882 -0.2436 -4.5523 37 1 3.2401 -0.6559 -3.6083 38 1 3.0833 1.4868 -2.2138 39 1 1.7913 1.9026 -3.3652 40 1 1.5784 3.1299 -1.3067 41 1 0.2972 2.0799 -1.4565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:10 Heat of formation + Delta-G solvation = 5.720911 kcal Electronic energy + Delta-G solvation = -19136.789470 eV Core-core repulsion = 16472.223472 eV Total energy + Delta-G solvation = -2664.565997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85171 -37.57912 -35.71650 -34.46022 -32.62117 -31.42368 -29.72627 -28.16283 -26.01684 -24.85673 -24.60905 -22.33739 -21.44057 -19.74983 -18.70679 -17.39867 -16.82693 -16.42701 -16.07203 -15.97284 -15.67560 -15.38394 -14.82401 -14.73027 -14.52567 -13.91458 -13.80063 -13.37582 -13.27252 -13.11438 -13.04401 -12.64785 -12.49908 -12.39505 -12.04099 -11.90893 -11.64205 -11.59680 -11.28272 -11.15737 -10.97936 -10.62877 -9.35889 -9.07048 -8.67010 -8.13503 -6.10264 1.36058 1.37926 1.49462 2.44188 2.96906 3.14734 3.29742 3.68955 4.00853 4.15608 4.19026 4.36642 4.40652 4.45566 4.53169 4.57396 4.63486 4.71409 4.72649 4.77815 4.82550 4.90593 4.99710 5.02462 5.05630 5.19884 5.27557 5.31234 5.38513 5.45943 5.82344 5.98597 6.08141 6.10404 6.33271 6.51919 6.66802 6.68744 6.75515 6.98702 7.50067 9.04076 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.008460 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.159218 B = 3308.767208 C = 3827.987501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.083 3.917 3 H 0.130 0.870 4 C -0.010 4.010 5 C -0.476 4.476 6 H 0.035 0.965 7 C -0.005 4.005 8 N -0.960 5.960 9 Si 0.939 3.061 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.251 1.251 13 N -0.525 5.525 14 C 0.058 3.942 15 C 0.063 3.937 16 N -0.547 5.547 17 C 0.026 3.974 18 C 0.065 3.935 19 C 0.087 3.913 20 H 0.047 0.953 21 C 0.076 3.924 22 N -0.844 5.844 23 H 0.032 0.968 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.011 0.989 27 H 0.005 0.995 28 H 0.258 0.742 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.023 0.977 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.347 0.653 41 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 1.602 -13.582 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 H 0.147 0.853 4 C -0.048 4.048 5 C -0.514 4.514 6 H 0.053 0.947 7 C -0.199 4.199 8 N -0.603 5.603 9 Si 0.765 3.235 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.175 1.175 13 N -0.250 5.250 14 C -0.071 4.071 15 C -0.066 4.066 16 N -0.271 5.271 17 C -0.122 4.122 18 C -0.064 4.064 19 C -0.022 4.022 20 H 0.065 0.935 21 C -0.055 4.055 22 N -0.377 5.377 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.029 0.971 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.161 0.839 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.719 1.059 -13.007 17.540 hybrid contribution 0.047 -0.116 0.239 0.270 sum -11.672 0.943 -12.768 17.325 Atomic orbital electron populations 1.22319 0.97947 0.99936 1.01728 1.22209 0.91606 1.01174 0.87501 0.85281 1.19773 0.94582 0.95222 0.95198 1.21289 0.91966 1.31572 1.06611 0.94680 1.25912 0.95448 0.97858 1.00666 1.70090 1.08314 1.48393 1.33533 0.85815 0.79696 0.79318 0.78696 1.19954 1.21487 1.17506 1.62225 1.59704 1.01034 1.01995 1.22056 0.97294 0.90452 0.97254 1.22108 0.96880 0.98110 0.89473 1.62221 1.59614 1.02625 1.02631 1.22411 0.97595 0.99886 0.92321 1.22163 0.97554 0.88575 0.98093 1.21707 0.97227 0.93462 0.89807 0.93517 1.21655 0.98610 0.92207 0.93047 1.59037 1.10936 1.18366 1.49346 0.94852 0.92733 0.91498 0.97062 0.97678 0.93276 0.94508 0.92297 0.89436 0.96371 0.96251 0.90531 0.89691 0.88371 0.95858 0.92671 0.92644 0.83856 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 7.92 71.98 0.57 -4.54 16 2 C 0.08 3.30 1.76 44.92 0.08 3.37 16 3 H 0.13 5.38 5.11 -2.39 -0.01 5.37 16 4 C -0.01 -0.50 3.22 29.85 0.10 -0.40 16 5 C -0.48 -28.27 9.39 25.60 0.24 -28.03 16 6 H 0.03 2.33 7.99 -2.91 -0.02 2.31 16 7 C 0.00 -0.29 5.47 84.65 0.46 0.18 16 8 N -0.96 -62.78 13.96 21.45 0.30 -62.48 16 9 Si 0.94 46.76 27.47 68.60 1.88 48.65 16 10 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 13 N -0.52 -20.03 4.26 -845.43 -3.60 -23.63 16 14 C 0.06 2.14 4.84 86.31 0.42 2.56 16 15 C 0.06 2.03 5.62 86.31 0.49 2.52 16 16 N -0.55 -14.99 4.97 -921.93 -4.58 -19.57 16 17 C 0.03 0.55 9.60 127.69 1.23 1.77 16 18 C 0.06 1.76 4.90 86.31 0.42 2.19 16 19 C 0.09 2.57 1.93 44.92 0.09 2.66 16 20 H 0.05 1.34 6.48 -2.39 -0.02 1.32 16 21 C 0.08 2.00 6.09 86.30 0.53 2.52 16 22 N -0.84 -20.58 5.65 -186.73 -1.05 -21.63 16 23 H 0.03 1.08 6.55 -2.39 -0.02 1.06 16 24 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.07 1.79 4.52 -2.38 -0.01 1.78 16 26 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 27 H 0.01 0.25 5.44 -2.39 -0.01 0.24 16 28 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 29 H 0.04 1.29 6.55 -2.38 -0.02 1.27 16 30 H 0.06 2.54 5.96 -2.39 -0.01 2.52 16 31 H 0.09 2.48 8.13 -2.39 -0.02 2.46 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 40 H 0.35 7.13 9.08 -89.69 -0.81 6.31 16 41 H 0.35 7.12 7.00 -89.70 -0.63 6.50 16 Total: -1.00 -69.94 299.38 -2.92 -72.86 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.48 Total: 21.02 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.61 Total: -15.21 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -8.94 Total: -127.32 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.88 Total: 48.65 kcal Total: -69.94 -2.92 -72.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.586 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds