Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46977 * 2 1 4 4 C 1.46900 * 110.99819 * 72.25895 * 3 2 1 5 5 C 1.53003 * 109.47078 * 199.88059 * 4 3 2 6 6 O 1.42904 * 109.46971 * 64.85116 * 5 4 3 7 7 C 1.42901 * 113.99727 * 184.90110 * 6 5 4 8 8 C 1.50697 * 109.47168 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99626 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00041 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99906 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99607 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47262 * 60.00267 * 12 10 8 14 14 H 1.48500 * 109.46909 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47434 * 299.99989 * 12 10 8 16 16 C 1.46899 * 110.99533 * 196.21235 * 3 2 1 17 17 C 1.52998 * 109.47254 * 66.05072 * 16 3 2 18 18 H 1.08995 * 115.56302 * 29.30384 * 17 16 3 19 19 C 1.53003 * 117.49633 * 243.61642 * 17 16 3 20 20 C 1.52996 * 59.99966 * 252.51094 * 19 17 16 21 21 H 1.09005 * 117.51601 * 107.48518 * 20 19 17 22 22 C 1.52999 * 117.49984 * 252.50835 * 20 19 17 23 23 H 1.09007 * 109.46906 * 301.58171 * 1 2 3 24 24 H 1.09004 * 109.47340 * 61.57297 * 1 2 3 25 25 H 1.08997 * 109.47289 * 181.58016 * 1 2 3 26 26 H 1.09006 * 109.46644 * 240.00353 * 2 1 3 27 27 H 1.08991 * 109.47052 * 120.00424 * 2 1 3 28 28 H 1.09001 * 109.47057 * 319.88262 * 4 3 2 29 29 H 1.09002 * 109.46961 * 79.88135 * 4 3 2 30 30 H 1.08996 * 109.47061 * 184.85565 * 5 4 3 31 31 H 1.09003 * 109.46703 * 304.85643 * 5 4 3 32 32 H 1.08999 * 109.46894 * 300.00088 * 7 6 5 33 33 H 1.08994 * 109.47236 * 60.00038 * 7 6 5 34 34 H 0.97005 * 119.99352 * 179.97438 * 11 10 8 35 35 H 1.08997 * 109.47353 * 306.04294 * 16 3 2 36 36 H 1.09006 * 109.46914 * 186.04855 * 16 3 2 37 37 H 1.09006 * 117.49754 * 145.01767 * 19 17 16 38 38 H 1.09003 * 117.49942 * 0.02562 * 19 17 16 39 39 H 1.09000 * 109.47269 * 128.62490 * 22 20 19 40 40 H 1.09001 * 109.46852 * 8.62752 * 22 20 19 41 41 H 1.09001 * 109.47337 * 248.63061 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8011 2.0206 1.3062 5 6 1.8465 3.5417 1.1472 6 8 0.7554 3.9678 0.3288 7 6 0.7673 5.3642 0.0251 8 6 -0.4216 5.7009 -0.8375 9 1 -1.1166 4.9259 -1.1253 10 6 -0.6215 6.9980 -1.2600 11 7 0.2251 7.9414 -0.9099 12 14 -2.0950 7.4151 -2.3298 13 1 -3.3455 7.0776 -1.6034 14 1 -2.0826 8.8661 -2.6453 15 1 -2.0286 6.6333 -3.5906 16 6 3.4367 1.4423 -0.3829 17 6 3.5894 1.0024 -1.8403 18 1 2.7321 1.2002 -2.4836 19 6 4.4003 -0.2659 -2.1140 20 6 4.9814 1.1047 -2.4669 21 1 5.7884 1.4858 -1.8410 22 6 5.0635 1.4769 -3.9487 23 1 -0.3633 0.5382 0.8755 24 1 -0.3634 0.4892 -0.9038 25 1 -0.3634 -1.0272 0.0283 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.8270 1.7249 1.6957 29 1 2.5808 1.7043 1.9992 30 1 1.7707 4.0119 2.1276 31 1 2.7871 3.8300 0.6777 32 1 0.7183 5.9377 0.9507 33 1 1.6852 5.6122 -0.5079 34 1 0.0846 8.8539 -1.2075 35 1 4.0139 0.7776 0.2598 36 1 3.8022 2.4632 -0.2714 37 1 4.0763 -0.9025 -2.9375 38 1 4.8246 -0.7871 -1.2558 39 1 4.6054 2.4537 -4.1038 40 1 4.5353 0.7296 -4.5408 41 1 6.1084 1.5126 -4.2570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698363273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -31.895511 kcal Electronic energy + Delta-G solvation = -17720.219031 eV Core-core repulsion = 15021.729113 eV Total energy + Delta-G solvation = -2698.489919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.80805 -37.06036 -35.81628 -32.65223 -31.00679 -29.79385 -28.07454 -26.72456 -25.13348 -22.49771 -22.09561 -21.26876 -20.37206 -19.95876 -16.35262 -16.09221 -15.58000 -15.17015 -14.89805 -14.34495 -14.13044 -14.01057 -13.77905 -13.20669 -12.99216 -12.72421 -12.26618 -12.08500 -11.82316 -11.61008 -11.53734 -11.33341 -11.29250 -11.05083 -10.81643 -10.75630 -10.51329 -10.32680 -9.94494 -9.85060 -9.61219 -9.00763 -8.69934 -8.03833 -7.97992 -6.03014 -4.03542 3.37324 3.39410 3.43856 3.73771 4.05459 4.42063 4.71181 4.86864 4.94846 5.00963 5.20593 5.28733 5.33413 5.39003 5.45213 5.51960 5.68180 5.70594 5.73829 5.76575 5.80560 5.90475 5.94281 5.96926 6.03397 6.06527 6.19092 6.22849 6.25477 6.39312 6.45108 6.55603 7.20888 7.37831 7.39396 7.54248 7.88684 8.26383 8.72690 9.11401 9.60947 11.08738 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.005524 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.859842 B = 5067.214177 C = 5671.976148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 N -0.521 5.521 4 C 0.058 3.942 5 C 0.069 3.931 6 O -0.379 6.379 7 C 0.195 3.805 8 C -0.509 4.509 9 H 0.065 0.935 10 C 0.055 3.945 11 N -0.901 5.901 12 Si 0.906 3.094 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.086 3.914 17 C -0.135 4.135 18 H 0.115 0.885 19 C -0.184 4.184 20 C -0.152 4.152 21 H 0.100 0.900 22 C -0.122 4.122 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.000 1.000 33 H 0.003 0.997 34 H 0.263 0.737 35 H 0.027 0.973 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.253 -15.795 0.442 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 N -0.246 5.246 4 C -0.070 4.070 5 C -0.009 4.009 6 O -0.298 6.298 7 C 0.121 3.879 8 C -0.547 4.547 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.541 5.541 12 Si 0.734 3.266 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.041 4.041 17 C -0.153 4.153 18 H 0.133 0.867 19 C -0.221 4.221 20 C -0.171 4.171 21 H 0.118 0.882 22 C -0.179 4.179 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.862 -15.458 0.009 17.343 hybrid contribution 0.052 0.144 0.208 0.258 sum 7.914 -15.315 0.217 17.240 Atomic orbital electron populations 1.21775 0.94856 1.00408 1.03388 1.22055 0.96306 0.88980 1.00045 1.61854 1.16856 1.16460 1.29392 1.22187 1.01096 0.94599 0.89080 1.22217 0.91643 0.92833 0.94207 1.87928 1.44647 1.27925 1.69309 1.20142 0.97048 0.76062 0.94654 1.21027 1.09162 0.93895 1.30617 0.91639 1.24935 0.97087 0.95905 0.96616 1.69960 1.36627 1.01505 1.45974 0.86424 0.82483 0.77014 0.80703 1.20078 1.21246 1.20048 1.21686 0.88588 1.00878 0.92996 1.22411 0.95197 1.00402 0.97303 0.86670 1.23226 1.04880 0.90843 1.03119 1.22346 0.97176 1.00154 0.97424 0.88181 1.21350 1.01517 1.01845 0.93207 0.92499 0.91486 0.93151 0.90844 0.95835 0.90005 0.94442 0.94625 0.94716 0.98192 0.97964 0.92745 0.95474 0.90246 0.89097 0.89412 0.91766 0.92709 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.00 37.16 0.37 -1.58 16 2 C 0.05 0.71 5.55 -3.82 -0.02 0.69 16 3 N -0.52 -8.11 4.33 -234.62 -1.02 -9.13 16 4 C 0.06 0.91 5.21 -3.82 -0.02 0.89 16 5 C 0.07 1.34 6.13 37.16 0.23 1.57 16 6 O -0.38 -9.46 10.27 -35.23 -0.36 -9.82 16 7 C 0.20 5.54 5.69 36.00 0.20 5.74 16 8 C -0.51 -15.38 9.43 -34.44 -0.32 -15.71 16 9 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 12 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.09 1.20 5.07 -3.83 -0.02 1.18 16 17 C -0.13 -1.74 4.39 -90.62 -0.40 -2.13 16 18 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 19 C -0.18 -1.93 9.64 -26.73 -0.26 -2.18 16 20 C -0.15 -1.72 6.13 -90.62 -0.56 -2.27 16 21 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 22 C -0.12 -1.29 10.19 37.16 0.38 -0.91 16 23 H 0.06 0.80 6.51 -51.93 -0.34 0.46 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.91 6.74 -51.93 -0.35 0.56 16 27 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 28 H 0.08 1.29 6.24 -51.93 -0.32 0.96 16 29 H 0.04 0.50 8.00 -51.93 -0.42 0.08 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.66 6.67 -51.93 -0.35 0.32 16 32 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.03 0.34 7.85 -51.93 -0.41 -0.07 16 36 H 0.08 1.20 6.58 -51.93 -0.34 0.85 16 37 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 38 H 0.09 0.85 8.03 -51.93 -0.42 0.44 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -31.55 331.65 -8.71 -40.26 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.54 Total: -3.62 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.51 Total: -13.19 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.28 Total: -35.93 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.36 Total: -9.82 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.55 -8.71 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698363273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.367 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds