Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46977 * 2 1 4 4 C 1.46900 * 110.99819 * 72.25895 * 3 2 1 5 5 C 1.53003 * 109.47078 * 199.88059 * 4 3 2 6 6 O 1.42904 * 109.46971 * 64.85116 * 5 4 3 7 7 C 1.42901 * 113.99727 * 184.90110 * 6 5 4 8 8 C 1.50697 * 109.47168 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99626 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00041 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99906 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99607 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47262 * 60.00267 * 12 10 8 14 14 H 1.48500 * 109.46909 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47434 * 299.99989 * 12 10 8 16 16 C 1.46899 * 110.99533 * 196.21235 * 3 2 1 17 17 C 1.52998 * 109.47254 * 66.05072 * 16 3 2 18 18 H 1.08995 * 115.56302 * 29.30384 * 17 16 3 19 19 C 1.53003 * 117.49633 * 243.61642 * 17 16 3 20 20 C 1.52996 * 59.99966 * 252.51094 * 19 17 16 21 21 H 1.09005 * 117.51601 * 107.48518 * 20 19 17 22 22 C 1.52999 * 117.49984 * 252.50835 * 20 19 17 23 23 H 1.09007 * 109.46906 * 301.58171 * 1 2 3 24 24 H 1.09004 * 109.47340 * 61.57297 * 1 2 3 25 25 H 1.08997 * 109.47289 * 181.58016 * 1 2 3 26 26 H 1.09006 * 109.46644 * 240.00353 * 2 1 3 27 27 H 1.08991 * 109.47052 * 120.00424 * 2 1 3 28 28 H 1.09001 * 109.47057 * 319.88262 * 4 3 2 29 29 H 1.09002 * 109.46961 * 79.88135 * 4 3 2 30 30 H 1.08996 * 109.47061 * 184.85565 * 5 4 3 31 31 H 1.09003 * 109.46703 * 304.85643 * 5 4 3 32 32 H 1.08999 * 109.46894 * 300.00088 * 7 6 5 33 33 H 1.08994 * 109.47236 * 60.00038 * 7 6 5 34 34 H 0.97005 * 119.99352 * 179.97438 * 11 10 8 35 35 H 1.08997 * 109.47353 * 306.04294 * 16 3 2 36 36 H 1.09006 * 109.46914 * 186.04855 * 16 3 2 37 37 H 1.09006 * 117.49754 * 145.01767 * 19 17 16 38 38 H 1.09003 * 117.49942 * 0.02562 * 19 17 16 39 39 H 1.09000 * 109.47269 * 128.62490 * 22 20 19 40 40 H 1.09001 * 109.46852 * 8.62752 * 22 20 19 41 41 H 1.09001 * 109.47337 * 248.63061 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8011 2.0206 1.3062 5 6 1.8465 3.5417 1.1472 6 8 0.7554 3.9678 0.3288 7 6 0.7673 5.3642 0.0251 8 6 -0.4216 5.7009 -0.8375 9 1 -1.1166 4.9259 -1.1253 10 6 -0.6215 6.9980 -1.2600 11 7 0.2251 7.9414 -0.9099 12 14 -2.0950 7.4151 -2.3298 13 1 -3.3455 7.0776 -1.6034 14 1 -2.0826 8.8661 -2.6453 15 1 -2.0286 6.6333 -3.5906 16 6 3.4367 1.4423 -0.3829 17 6 3.5894 1.0024 -1.8403 18 1 2.7321 1.2002 -2.4836 19 6 4.4003 -0.2659 -2.1140 20 6 4.9814 1.1047 -2.4669 21 1 5.7884 1.4858 -1.8410 22 6 5.0635 1.4769 -3.9487 23 1 -0.3633 0.5382 0.8755 24 1 -0.3634 0.4892 -0.9038 25 1 -0.3634 -1.0272 0.0283 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.8270 1.7249 1.6957 29 1 2.5808 1.7043 1.9992 30 1 1.7707 4.0119 2.1276 31 1 2.7871 3.8300 0.6777 32 1 0.7183 5.9377 0.9507 33 1 1.6852 5.6122 -0.5079 34 1 0.0846 8.8539 -1.2075 35 1 4.0139 0.7776 0.2598 36 1 3.8022 2.4632 -0.2714 37 1 4.0763 -0.9025 -2.9375 38 1 4.8246 -0.7871 -1.2558 39 1 4.6054 2.4537 -4.1038 40 1 4.5353 0.7296 -4.5408 41 1 6.1084 1.5126 -4.2570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698363273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -51.470578 kcal Electronic energy + Delta-G solvation = -17721.067870 eV Core-core repulsion = 15021.729113 eV Total energy + Delta-G solvation = -2699.338757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91366 -38.52705 -37.28232 -34.89257 -32.21418 -31.05624 -29.44561 -28.54317 -26.28689 -24.49513 -23.62981 -22.23835 -21.44777 -21.01387 -18.60987 -17.51626 -17.14930 -16.69412 -16.15448 -16.11643 -15.42611 -15.20865 -15.12479 -14.73193 -14.17624 -13.86854 -13.63475 -13.51498 -13.19514 -12.96299 -12.83456 -12.71642 -12.63504 -12.56360 -12.27611 -12.17127 -12.10252 -11.69944 -11.67882 -11.24770 -10.84548 -10.79617 -10.55685 -10.14095 -9.10574 -8.30418 -6.42315 1.39351 1.44672 1.52950 2.35879 2.77611 2.99791 3.03061 3.27641 3.77131 3.97085 4.00566 4.14127 4.22168 4.33810 4.38476 4.40187 4.47502 4.59363 4.60437 4.69272 4.75249 4.81992 4.88436 4.91465 4.92224 4.94494 4.98106 5.05546 5.16683 5.20603 5.21196 5.34103 5.43863 5.47663 5.56680 5.99385 6.22349 6.30831 6.59251 6.88700 7.29890 8.81939 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.005524 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.859842 B = 5067.214177 C = 5671.976148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 N -0.551 5.551 4 C 0.067 3.933 5 C 0.060 3.940 6 O -0.393 6.393 7 C 0.212 3.788 8 C -0.545 4.545 9 H 0.059 0.941 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.982 3.018 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.267 1.267 16 C 0.091 3.909 17 C -0.156 4.156 18 H 0.088 0.912 19 C -0.158 4.158 20 C -0.155 4.155 21 H 0.106 0.894 22 C -0.122 4.122 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.032 0.968 32 H -0.018 1.018 33 H -0.021 1.021 34 H 0.270 0.730 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -17.315 0.188 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 N -0.276 5.276 4 C -0.061 4.061 5 C -0.018 4.018 6 O -0.312 6.312 7 C 0.136 3.864 8 C -0.582 4.582 9 H 0.077 0.923 10 C -0.192 4.192 11 N -0.571 5.571 12 Si 0.805 3.195 13 H -0.189 1.189 14 H -0.198 1.198 15 H -0.192 1.192 16 C -0.036 4.036 17 C -0.174 4.174 18 H 0.106 0.894 19 C -0.195 4.195 20 C -0.173 4.173 21 H 0.124 0.876 22 C -0.180 4.180 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.000 1.000 33 H -0.004 1.004 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.911 -16.999 -0.233 18.751 hybrid contribution 0.114 0.592 0.324 0.684 sum 8.024 -16.407 0.091 18.265 Atomic orbital electron populations 1.21760 0.95334 1.01606 1.01466 1.22062 0.95816 0.87741 1.01293 1.61782 1.18185 1.18259 1.29402 1.22082 1.02254 0.91619 0.90119 1.22577 0.89826 0.95802 0.93585 1.87887 1.47089 1.25729 1.70528 1.19745 0.95582 0.77790 0.93253 1.21339 1.10057 0.94649 1.32181 0.92253 1.25955 1.00338 0.95314 0.97588 1.70071 1.38378 1.02101 1.46582 0.85256 0.78288 0.77345 0.78649 1.18912 1.19826 1.19171 1.21625 0.87922 1.00134 0.93941 1.22250 0.95275 1.03417 0.96485 0.89355 1.23268 1.02565 0.90023 1.03658 1.22457 0.96123 1.01080 0.97673 0.87638 1.21360 1.02492 1.01026 0.93077 0.93604 0.94081 0.90451 0.90068 0.93836 0.90060 0.91206 0.93667 0.94953 1.00024 1.00356 0.92092 0.93371 0.92416 0.88124 0.87878 0.93529 0.92138 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 10.00 71.98 0.72 -2.98 16 2 C 0.06 1.42 5.55 86.30 0.48 1.90 16 3 N -0.55 -16.84 4.33 -896.21 -3.88 -20.73 16 4 C 0.07 2.04 5.21 86.30 0.45 2.49 16 5 C 0.06 2.34 6.13 71.98 0.44 2.79 16 6 O -0.39 -20.30 10.27 -148.98 -1.53 -21.83 16 7 C 0.21 12.50 5.69 71.24 0.41 12.91 16 8 C -0.54 -33.80 9.43 25.60 0.24 -33.56 16 9 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 10 C 0.01 0.37 5.46 84.66 0.46 0.84 16 11 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 12 Si 0.98 45.70 29.54 68.60 2.03 47.72 16 13 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 C 0.09 2.46 5.07 86.30 0.44 2.90 16 17 C -0.16 -3.94 4.39 -10.79 -0.05 -3.98 16 18 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 19 C -0.16 -2.95 9.64 30.59 0.29 -2.65 16 20 C -0.15 -3.31 6.13 -10.80 -0.07 -3.37 16 21 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 22 C -0.12 -2.49 10.19 71.98 0.73 -1.76 16 23 H 0.04 1.26 6.51 -2.38 -0.02 1.24 16 24 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.85 6.74 -2.38 -0.02 1.84 16 27 H 0.04 0.91 8.05 -2.39 -0.02 0.89 16 28 H 0.08 2.49 6.24 -2.39 -0.01 2.47 16 29 H 0.07 1.70 8.00 -2.39 -0.02 1.68 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.03 1.28 6.67 -2.39 -0.02 1.26 16 32 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 33 H -0.02 -1.33 8.14 -2.39 -0.02 -1.34 16 34 H 0.27 15.48 8.31 -92.70 -0.77 14.70 16 35 H 0.05 1.08 7.85 -2.39 -0.02 1.06 16 36 H 0.06 1.77 6.58 -2.38 -0.02 1.75 16 37 H 0.10 1.70 8.05 -2.38 -0.02 1.68 16 38 H 0.10 1.64 8.03 -2.39 -0.02 1.62 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.14 7.90 -2.39 -0.02 1.12 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.87 331.65 2.41 -66.46 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.96 Total: 10.21 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 4.55 Total: -24.49 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -3.60 Total: -78.07 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -1.53 Total: -21.83 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -68.87 2.41 -66.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698363273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.991 kcal (2) G-P(sol) polarization free energy of solvation -68.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds