Wall clock time and date at job start Mon Mar 30 2020 03:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46875 * 2 1 4 4 C 1.46896 * 110.99824 * 76.33657 * 3 2 1 5 5 C 1.53002 * 109.47324 * 200.46193 * 4 3 2 6 6 O 1.42894 * 109.46791 * 63.80764 * 5 4 3 7 7 C 1.42903 * 113.99721 * 175.12904 * 6 5 4 8 8 C 1.50702 * 109.47192 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99624 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00167 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99785 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00020 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47391 * 89.99880 * 12 10 8 14 14 H 1.48504 * 109.47092 * 210.00166 * 12 10 8 15 15 H 1.48504 * 109.47146 * 330.00035 * 12 10 8 16 16 C 1.46897 * 110.99984 * 200.29026 * 3 2 1 17 17 C 1.53006 * 109.46998 * 66.04431 * 16 3 2 18 18 H 1.08992 * 115.55139 * 330.72501 * 17 16 3 19 19 C 1.53000 * 117.49264 * 116.39100 * 17 16 3 20 20 C 1.53000 * 117.49875 * 185.01296 * 17 16 3 21 21 H 1.09000 * 117.49625 * 359.97438 * 20 17 16 22 22 C 1.52992 * 117.49881 * 145.02309 * 20 17 16 23 23 H 1.09004 * 109.46919 * 182.36678 * 1 2 3 24 24 H 1.08992 * 109.47627 * 302.36347 * 1 2 3 25 25 H 1.09001 * 109.47049 * 62.36851 * 1 2 3 26 26 H 1.09004 * 109.47262 * 240.00306 * 2 1 3 27 27 H 1.08997 * 109.46865 * 120.00250 * 2 1 3 28 28 H 1.09007 * 109.47110 * 80.46413 * 4 3 2 29 29 H 1.09005 * 109.47590 * 320.46630 * 4 3 2 30 30 H 1.09000 * 109.47076 * 303.80986 * 5 4 3 31 31 H 1.09002 * 109.47074 * 183.81204 * 5 4 3 32 32 H 1.08999 * 109.47176 * 300.00390 * 7 6 5 33 33 H 1.09005 * 109.47115 * 60.00360 * 7 6 5 34 34 H 0.97003 * 119.99767 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.47117 * 186.04827 * 16 3 2 36 36 H 1.09003 * 109.47097 * 306.05065 * 16 3 2 37 37 H 1.08998 * 117.49927 * 214.97703 * 19 17 16 38 38 H 1.08999 * 117.50287 * 0.02562 * 19 17 16 39 39 H 1.09000 * 109.47252 * 60.00310 * 22 20 17 40 40 H 1.09003 * 109.47294 * 180.02562 * 22 20 17 41 41 H 1.08999 * 109.47586 * 299.99978 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8896 1.9893 1.3326 5 6 1.9109 3.5139 1.2056 6 8 0.7734 3.9453 0.4560 7 6 0.6374 5.3653 0.3716 8 6 -0.5886 5.7054 -0.4360 9 1 -1.2023 4.9161 -0.8443 10 6 -0.9262 7.0243 -0.6545 11 7 -0.1786 7.9854 -0.1576 12 14 -2.4455 7.4459 -1.6561 13 1 -3.6196 7.5536 -0.7532 14 1 -2.2359 8.7407 -2.3522 15 1 -2.6890 6.3783 -2.6593 16 6 3.4078 1.4527 -0.4756 17 6 3.4621 1.0473 -1.9500 18 1 2.6962 0.3420 -2.2721 19 6 3.9165 2.1056 -2.9571 20 6 4.8417 0.9397 -2.6027 21 1 5.7106 1.1581 -1.9818 22 6 5.0409 -0.1501 -3.6578 23 1 -0.3633 -1.0268 0.0424 24 1 -0.3634 0.5500 0.8679 25 1 -0.3633 0.4766 -0.9105 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7194 1.6655 1.9609 29 1 0.9483 1.6754 1.7838 30 1 2.8220 3.8231 0.6935 31 1 1.8826 3.9617 2.1990 32 1 0.5385 5.7811 1.3743 33 1 1.5193 5.7867 -0.1111 34 1 -0.4159 8.9132 -0.3116 35 1 3.7807 2.4709 -0.3646 36 1 4.0263 0.7732 0.1110 37 1 3.4499 2.0962 -3.9421 38 1 4.1772 3.0904 -2.5694 39 1 4.3446 0.0095 -4.4810 40 1 6.0634 -0.1097 -4.0334 41 1 4.8570 -1.1270 -3.2105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698363274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:51 Heat of formation + Delta-G solvation = -30.605694 kcal Electronic energy + Delta-G solvation = -17708.271284 eV Core-core repulsion = 15009.837296 eV Total energy + Delta-G solvation = -2698.433988 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.77182 -37.04602 -35.84663 -32.65688 -31.02945 -29.80062 -28.12341 -26.75609 -25.04127 -22.54533 -22.13561 -21.35323 -20.35056 -19.80638 -16.35867 -16.01437 -15.67943 -15.20014 -15.04678 -14.23507 -14.13537 -14.00025 -13.49084 -13.34767 -13.02006 -12.81287 -12.44056 -12.05185 -11.85107 -11.67328 -11.47682 -11.33517 -11.19628 -11.06693 -10.77543 -10.76499 -10.42493 -10.31996 -9.90761 -9.83470 -9.67463 -8.99922 -8.70880 -8.05838 -7.94088 -6.03437 -4.03854 3.35090 3.39766 3.46022 3.72132 4.14721 4.42132 4.72187 4.89567 4.95172 5.01741 5.20424 5.25189 5.33117 5.38395 5.48412 5.50450 5.63009 5.68431 5.70797 5.78616 5.84203 5.89390 5.91536 5.96673 6.03194 6.05991 6.17873 6.22684 6.29095 6.37336 6.43199 6.55886 7.19802 7.36888 7.38674 7.53185 7.88895 8.26079 8.72562 9.11675 9.60779 11.08379 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020599 B = 0.005303 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.982817 B = 5278.544820 C = 5753.461552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.520 5.520 4 C 0.059 3.941 5 C 0.070 3.930 6 O -0.377 6.377 7 C 0.194 3.806 8 C -0.508 4.508 9 H 0.066 0.934 10 C 0.055 3.945 11 N -0.901 5.901 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.271 1.271 16 C 0.086 3.914 17 C -0.138 4.138 18 H 0.107 0.893 19 C -0.165 4.165 20 C -0.163 4.163 21 H 0.099 0.901 22 C -0.120 4.120 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.026 0.974 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.932 -15.976 -1.265 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.245 5.245 4 C -0.068 4.068 5 C -0.009 4.009 6 O -0.296 6.296 7 C 0.119 3.881 8 C -0.546 4.546 9 H 0.084 0.916 10 C -0.146 4.146 11 N -0.541 5.541 12 Si 0.733 3.267 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.196 1.196 16 C -0.042 4.042 17 C -0.156 4.156 18 H 0.124 0.876 19 C -0.202 4.202 20 C -0.182 4.182 21 H 0.117 0.883 22 C -0.177 4.177 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.513 -15.634 -1.667 17.879 hybrid contribution -0.015 0.245 0.242 0.344 sum 8.497 -15.390 -1.425 17.638 Atomic orbital electron populations 1.21749 0.94739 1.00327 1.03477 1.22104 0.96519 0.89071 0.99996 1.61833 1.19767 1.17302 1.25571 1.22184 1.00913 0.94810 0.88918 1.22208 0.90937 0.92841 0.94867 1.87952 1.43393 1.25507 1.72791 1.20163 0.96689 0.75546 0.95665 1.21067 1.09189 0.91998 1.32342 0.91560 1.24938 0.97457 0.95915 0.96253 1.69971 1.38685 0.99719 1.45714 0.86367 0.82489 0.77703 0.80115 1.20549 1.21168 1.19620 1.21690 0.88930 1.00713 0.92840 1.22359 0.96833 1.02629 0.93788 0.87554 1.23145 1.02505 0.94292 1.00213 1.22410 0.94142 0.99820 1.01832 0.88271 1.21330 1.01541 0.97325 0.97487 0.93195 0.92376 0.91589 0.91083 0.95568 0.94383 0.90110 0.94916 0.94534 0.98138 0.98034 0.92807 0.90503 0.95262 0.88941 0.88678 0.92560 0.92448 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.05 37.16 0.37 -1.56 16 2 C 0.05 0.66 5.50 -3.82 -0.02 0.64 16 3 N -0.52 -8.08 4.29 -234.62 -1.01 -9.09 16 4 C 0.06 0.93 5.20 -3.83 -0.02 0.91 16 5 C 0.07 1.35 6.13 37.16 0.23 1.58 16 6 O -0.38 -9.45 10.26 -35.23 -0.36 -9.81 16 7 C 0.19 5.49 5.69 36.01 0.20 5.70 16 8 C -0.51 -15.36 9.43 -34.44 -0.32 -15.69 16 9 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 10 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 12 Si 0.91 22.34 29.54 -169.99 -5.02 17.32 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.09 1.18 5.06 -3.82 -0.02 1.16 16 17 C -0.14 -1.76 5.27 -90.62 -0.48 -2.24 16 18 H 0.11 1.38 6.45 -51.93 -0.33 1.05 16 19 C -0.16 -2.13 9.82 -26.73 -0.26 -2.39 16 20 C -0.16 -1.78 6.13 -90.62 -0.56 -2.33 16 21 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 22 C -0.12 -1.09 10.19 37.15 0.38 -0.71 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.84 6.75 -51.93 -0.35 0.48 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.85 6.00 -51.93 -0.31 0.54 16 27 H 0.03 0.31 7.99 -51.93 -0.41 -0.10 16 28 H 0.04 0.51 7.99 -51.93 -0.41 0.09 16 29 H 0.08 1.27 6.50 -51.93 -0.34 0.94 16 30 H 0.03 0.62 6.73 -51.93 -0.35 0.27 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.08 1.14 6.36 -51.93 -0.33 0.81 16 36 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.09 1.16 8.05 -51.93 -0.42 0.75 16 38 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 39 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -31.76 330.75 -8.70 -40.46 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -7.44 Total: -3.64 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.59 Total: -13.42 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.27 Total: -35.89 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.81 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.76 -8.70 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698363274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.852 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds