Wall clock time and date at job start Mon Mar 30 2020 03:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46875 * 2 1 4 4 C 1.46896 * 110.99824 * 76.33657 * 3 2 1 5 5 C 1.53002 * 109.47324 * 200.46193 * 4 3 2 6 6 O 1.42894 * 109.46791 * 63.80764 * 5 4 3 7 7 C 1.42903 * 113.99721 * 175.12904 * 6 5 4 8 8 C 1.50702 * 109.47192 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99624 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00167 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99785 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00020 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47391 * 89.99880 * 12 10 8 14 14 H 1.48504 * 109.47092 * 210.00166 * 12 10 8 15 15 H 1.48504 * 109.47146 * 330.00035 * 12 10 8 16 16 C 1.46897 * 110.99984 * 200.29026 * 3 2 1 17 17 C 1.53006 * 109.46998 * 66.04431 * 16 3 2 18 18 H 1.08992 * 115.55139 * 330.72501 * 17 16 3 19 19 C 1.53000 * 117.49264 * 116.39100 * 17 16 3 20 20 C 1.53000 * 117.49875 * 185.01296 * 17 16 3 21 21 H 1.09000 * 117.49625 * 359.97438 * 20 17 16 22 22 C 1.52992 * 117.49881 * 145.02309 * 20 17 16 23 23 H 1.09004 * 109.46919 * 182.36678 * 1 2 3 24 24 H 1.08992 * 109.47627 * 302.36347 * 1 2 3 25 25 H 1.09001 * 109.47049 * 62.36851 * 1 2 3 26 26 H 1.09004 * 109.47262 * 240.00306 * 2 1 3 27 27 H 1.08997 * 109.46865 * 120.00250 * 2 1 3 28 28 H 1.09007 * 109.47110 * 80.46413 * 4 3 2 29 29 H 1.09005 * 109.47590 * 320.46630 * 4 3 2 30 30 H 1.09000 * 109.47076 * 303.80986 * 5 4 3 31 31 H 1.09002 * 109.47074 * 183.81204 * 5 4 3 32 32 H 1.08999 * 109.47176 * 300.00390 * 7 6 5 33 33 H 1.09005 * 109.47115 * 60.00360 * 7 6 5 34 34 H 0.97003 * 119.99767 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.47117 * 186.04827 * 16 3 2 36 36 H 1.09003 * 109.47097 * 306.05065 * 16 3 2 37 37 H 1.08998 * 117.49927 * 214.97703 * 19 17 16 38 38 H 1.08999 * 117.50287 * 0.02562 * 19 17 16 39 39 H 1.09000 * 109.47252 * 60.00310 * 22 20 17 40 40 H 1.09003 * 109.47294 * 180.02562 * 22 20 17 41 41 H 1.08999 * 109.47586 * 299.99978 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8896 1.9893 1.3326 5 6 1.9109 3.5139 1.2056 6 8 0.7734 3.9453 0.4560 7 6 0.6374 5.3653 0.3716 8 6 -0.5886 5.7054 -0.4360 9 1 -1.2023 4.9161 -0.8443 10 6 -0.9262 7.0243 -0.6545 11 7 -0.1786 7.9854 -0.1576 12 14 -2.4455 7.4459 -1.6561 13 1 -3.6196 7.5536 -0.7532 14 1 -2.2359 8.7407 -2.3522 15 1 -2.6890 6.3783 -2.6593 16 6 3.4078 1.4527 -0.4756 17 6 3.4621 1.0473 -1.9500 18 1 2.6962 0.3420 -2.2721 19 6 3.9165 2.1056 -2.9571 20 6 4.8417 0.9397 -2.6027 21 1 5.7106 1.1581 -1.9818 22 6 5.0409 -0.1501 -3.6578 23 1 -0.3633 -1.0268 0.0424 24 1 -0.3634 0.5500 0.8679 25 1 -0.3633 0.4766 -0.9105 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7194 1.6655 1.9609 29 1 0.9483 1.6754 1.7838 30 1 2.8220 3.8231 0.6935 31 1 1.8826 3.9617 2.1990 32 1 0.5385 5.7811 1.3743 33 1 1.5193 5.7867 -0.1111 34 1 -0.4159 8.9132 -0.3116 35 1 3.7807 2.4709 -0.3646 36 1 4.0263 0.7732 0.1110 37 1 3.4499 2.0962 -3.9421 38 1 4.1772 3.0904 -2.5694 39 1 4.3446 0.0095 -4.4810 40 1 6.0634 -0.1097 -4.0334 41 1 4.8570 -1.1270 -3.2105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698363274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:49 Heat of formation + Delta-G solvation = -50.305493 kcal Electronic energy + Delta-G solvation = -17709.125532 eV Core-core repulsion = 15009.837296 eV Total energy + Delta-G solvation = -2699.288236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89620 -38.51841 -37.31835 -34.89675 -32.23900 -31.02928 -29.43315 -28.58686 -26.23794 -24.49276 -23.65561 -22.49917 -21.33926 -20.88352 -18.61745 -17.49077 -17.10097 -16.78600 -16.27400 -16.09425 -15.67012 -15.11596 -14.73221 -14.65074 -14.36824 -13.81762 -13.70031 -13.60550 -13.18666 -12.99026 -12.80783 -12.69678 -12.61565 -12.56159 -12.28220 -12.25513 -12.08797 -11.73423 -11.48562 -11.23751 -10.85768 -10.78604 -10.62775 -10.15514 -9.07661 -8.30850 -6.42589 1.39320 1.42562 1.54771 2.35798 2.70873 3.02739 3.08322 3.28678 3.74105 3.92499 4.00638 4.16597 4.22201 4.30649 4.38669 4.44858 4.52310 4.56671 4.58945 4.67745 4.74692 4.79520 4.83246 4.91734 4.95671 4.96953 5.00606 5.03693 5.15000 5.20155 5.20600 5.32485 5.45211 5.48709 5.56751 5.99077 6.21511 6.30324 6.59214 6.88913 7.29775 8.81727 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020599 B = 0.005303 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.982817 B = 5278.544820 C = 5753.461552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.550 5.550 4 C 0.068 3.932 5 C 0.060 3.940 6 O -0.392 6.392 7 C 0.210 3.790 8 C -0.543 4.543 9 H 0.059 0.941 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.982 3.018 13 H -0.266 1.266 14 H -0.273 1.273 15 H -0.266 1.266 16 C 0.089 3.911 17 C -0.146 4.146 18 H 0.106 0.894 19 C -0.187 4.187 20 C -0.138 4.138 21 H 0.108 0.892 22 C -0.119 4.119 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.044 0.956 32 H -0.017 1.017 33 H -0.021 1.021 34 H 0.270 0.730 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.930 -17.496 -1.661 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 N -0.275 5.275 4 C -0.059 4.059 5 C -0.017 4.017 6 O -0.311 6.311 7 C 0.134 3.866 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.192 4.192 11 N -0.572 5.572 12 Si 0.805 3.195 13 H -0.191 1.191 14 H -0.198 1.198 15 H -0.190 1.190 16 C -0.038 4.038 17 C -0.164 4.164 18 H 0.124 0.876 19 C -0.225 4.225 20 C -0.156 4.156 21 H 0.126 0.874 22 C -0.176 4.176 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.001 0.999 33 H -0.004 1.004 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.529 -17.174 -2.050 19.285 hybrid contribution 0.058 0.699 0.401 0.808 sum 8.587 -16.475 -1.649 18.652 Atomic orbital electron populations 1.21734 0.95344 1.01513 1.01437 1.22130 0.95917 0.87822 1.01466 1.61756 1.21091 1.19172 1.25510 1.22075 1.02178 0.91773 0.89906 1.22564 0.88981 0.95806 0.94383 1.87910 1.45954 1.23245 1.73992 1.19774 0.95341 0.77362 0.94086 1.21362 1.10233 0.92691 1.33821 0.92294 1.25948 1.00910 0.95338 0.96960 1.70076 1.40405 1.00375 1.46299 0.85202 0.78038 0.77796 0.78489 1.19127 1.19824 1.19033 1.21655 0.88361 1.00130 0.93684 1.22362 0.98368 1.02490 0.93176 0.87610 1.23153 1.04638 0.94322 1.00345 1.22493 0.93237 0.98567 1.01322 0.87403 1.21366 1.02387 0.97013 0.96850 0.90451 0.93889 0.94022 0.89869 0.93615 0.91119 0.90244 0.94969 0.93803 0.99933 1.00356 0.92099 0.92411 0.93170 0.89053 0.90373 0.92806 0.91046 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 10.05 71.98 0.72 -2.93 16 2 C 0.05 1.29 5.50 86.30 0.47 1.76 16 3 N -0.55 -16.62 4.29 -896.20 -3.84 -20.46 16 4 C 0.07 2.08 5.20 86.30 0.45 2.53 16 5 C 0.06 2.37 6.13 71.98 0.44 2.81 16 6 O -0.39 -20.26 10.26 -148.98 -1.53 -21.79 16 7 C 0.21 12.37 5.69 71.24 0.41 12.78 16 8 C -0.54 -33.72 9.43 25.60 0.24 -33.48 16 9 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 10 C 0.01 0.39 5.46 84.66 0.46 0.85 16 11 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 12 Si 0.98 45.72 29.54 68.60 2.03 47.74 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 C 0.09 2.36 5.06 86.31 0.44 2.80 16 17 C -0.15 -3.60 5.27 -10.79 -0.06 -3.66 16 18 H 0.11 2.63 6.45 -2.39 -0.02 2.61 16 19 C -0.19 -4.91 9.82 30.60 0.30 -4.61 16 20 C -0.14 -2.78 6.13 -10.79 -0.07 -2.85 16 21 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 22 C -0.12 -1.89 10.19 71.98 0.73 -1.16 16 23 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.04 1.21 6.75 -2.39 -0.02 1.20 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.79 6.00 -2.38 -0.01 1.78 16 27 H 0.05 0.94 7.99 -2.39 -0.02 0.92 16 28 H 0.07 1.71 7.99 -2.38 -0.02 1.69 16 29 H 0.08 2.44 6.50 -2.38 -0.02 2.42 16 30 H 0.03 1.26 6.73 -2.39 -0.02 1.25 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 33 H -0.02 -1.32 8.14 -2.38 -0.02 -1.34 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.06 1.73 6.36 -2.39 -0.02 1.71 16 36 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 37 H 0.09 2.35 8.05 -2.39 -0.02 2.33 16 38 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 39 H 0.05 0.89 7.90 -2.39 -0.02 0.87 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -69.04 330.75 2.45 -66.59 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.96 Total: 10.34 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 4.54 Total: -25.15 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -3.56 Total: -77.74 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.53 Total: -21.79 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -69.04 2.45 -66.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698363274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.285 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds