Wall clock time and date at job start Mon Mar 30 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47636 * 2 1 4 4 C 1.46901 * 110.99422 * 55.30792 * 3 2 1 5 5 C 1.53002 * 109.47239 * 66.05283 * 4 3 2 6 6 O 1.42900 * 109.47059 * 64.99473 * 5 4 3 7 7 C 1.42900 * 113.99961 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47453 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99933 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00738 * 359.97438 * 10 8 7 12 12 Si 1.86813 * 119.99901 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47071 * 270.00000 * 12 10 8 14 14 H 1.48497 * 109.47139 * 149.99552 * 12 10 8 15 15 H 1.48505 * 109.46647 * 29.99764 * 12 10 8 16 16 C 1.46898 * 110.99780 * 291.35963 * 3 2 1 17 17 C 1.52999 * 109.47151 * 287.51727 * 16 3 2 18 18 H 1.09002 * 115.54791 * 329.47283 * 17 16 3 19 19 C 1.52995 * 117.49837 * 115.18252 * 17 16 3 20 20 C 1.52996 * 60.00185 * 107.49095 * 19 17 16 21 21 H 1.08998 * 117.50133 * 107.49325 * 20 19 17 22 22 C 1.53000 * 117.51674 * 252.52109 * 20 19 17 23 23 H 1.09005 * 109.47236 * 174.57652 * 1 2 3 24 24 H 1.08998 * 109.46731 * 294.57534 * 1 2 3 25 25 H 1.08995 * 109.47270 * 54.57000 * 1 2 3 26 26 H 1.09007 * 109.46903 * 240.00033 * 2 1 3 27 27 H 1.08998 * 109.47289 * 120.00402 * 2 1 3 28 28 H 1.08999 * 109.47631 * 306.05105 * 4 3 2 29 29 H 1.09004 * 109.46871 * 186.04961 * 4 3 2 30 30 H 1.09005 * 109.46935 * 304.99896 * 5 4 3 31 31 H 1.09001 * 109.47386 * 184.99756 * 5 4 3 32 32 H 1.09006 * 109.47045 * 59.99614 * 7 6 5 33 33 H 1.08998 * 109.46957 * 300.00524 * 7 6 5 34 34 H 0.97005 * 119.99204 * 0.02562 * 11 10 8 35 35 H 1.09003 * 109.47229 * 47.52013 * 16 3 2 36 36 H 1.09004 * 109.47079 * 167.52037 * 16 3 2 37 37 H 1.09003 * 117.49921 * 214.98202 * 19 17 16 38 38 H 1.09004 * 117.50230 * 359.97438 * 19 17 16 39 39 H 1.08997 * 109.47812 * 128.62675 * 22 20 19 40 40 H 1.09004 * 109.47225 * 248.63174 * 22 20 19 41 41 H 1.08998 * 109.47198 * 8.62437 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.4593 2.1414 1.1277 5 6 1.9918 1.5671 2.4420 6 8 3.4042 1.7721 2.5139 7 6 4.0045 1.2690 3.7091 8 6 5.4869 1.5385 3.6787 9 1 5.9266 2.0432 2.8311 10 6 6.2818 1.1400 4.7323 11 7 5.7464 0.5250 5.7642 12 14 8.1195 1.4735 4.6943 13 1 8.8174 0.3275 4.0581 14 1 8.6194 1.6494 6.0815 15 1 8.3823 2.7087 3.9130 16 6 1.7243 2.0477 -1.2772 17 6 2.6410 1.4875 -2.3666 18 1 3.6217 1.1521 -2.0291 19 6 1.9855 0.7148 -3.5129 20 6 2.5497 2.1155 -3.7587 21 1 3.4701 2.1930 -4.3373 22 6 1.5490 3.2562 -3.9548 23 1 -0.3634 -1.0231 -0.0971 24 1 -0.3633 0.4274 0.9346 25 1 -0.3633 0.5957 -0.8373 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.3721 2.0651 1.1119 29 1 1.7513 3.1882 1.0439 30 1 1.7771 0.4993 2.4854 31 1 1.5087 2.0692 3.2802 32 1 3.8314 0.1950 3.7784 33 1 3.5631 1.7646 4.5737 34 1 4.7922 0.3515 5.7838 35 1 0.6844 1.8664 -1.5487 36 1 1.8921 3.1202 -1.1774 37 1 2.5349 -0.1294 -3.9298 38 1 0.9012 0.6052 -3.4909 39 1 1.7988 4.0781 -3.2839 40 1 1.5920 3.6039 -4.9870 41 1 0.5432 2.8993 -3.7333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698363276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:06 Heat of formation + Delta-G solvation = -31.418040 kcal Electronic energy + Delta-G solvation = -17740.097151 eV Core-core repulsion = 15041.627937 eV Total energy + Delta-G solvation = -2698.469214 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.12007 -37.34462 -36.00040 -32.91384 -30.47029 -29.71009 -28.40967 -26.39499 -25.36543 -23.35504 -22.40837 -21.53486 -20.05561 -19.02418 -16.90550 -16.54395 -16.07285 -15.56657 -14.83831 -14.38350 -14.14388 -13.72038 -13.68893 -13.31782 -13.09446 -12.69410 -12.68593 -12.22879 -11.98735 -11.89023 -11.62553 -11.52984 -11.42902 -11.02399 -10.93997 -10.71231 -10.60181 -10.13435 -10.06125 -9.82928 -9.76799 -8.74907 -8.55987 -8.15690 -7.99180 -6.40293 -4.07674 3.46732 3.51184 3.66124 3.67793 4.04842 4.49499 4.63605 4.75404 4.81639 4.93609 5.09758 5.17805 5.21540 5.36473 5.37692 5.38560 5.42046 5.58545 5.62391 5.64218 5.67373 5.71673 5.82134 5.88728 5.90395 5.97232 6.01962 6.06603 6.15816 6.26851 6.30746 6.37810 6.83700 7.20681 7.30507 7.32284 7.99858 8.27351 8.73656 8.90077 9.62932 11.00125 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.004788 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.029162 B = 5846.963513 C = 6463.875300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 N -0.519 5.519 4 C 0.057 3.943 5 C 0.065 3.935 6 O -0.370 6.370 7 C 0.185 3.815 8 C -0.591 4.591 9 H 0.061 0.939 10 C 0.015 3.985 11 N -0.915 5.915 12 Si 1.081 2.919 13 H -0.286 1.286 14 H -0.284 1.284 15 H -0.286 1.286 16 C 0.085 3.915 17 C -0.135 4.135 18 H 0.115 0.885 19 C -0.182 4.182 20 C -0.155 4.155 21 H 0.102 0.898 22 C -0.122 4.122 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.037 0.963 32 H -0.008 1.008 33 H -0.009 1.009 34 H 0.266 0.734 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 1.638 -16.570 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.080 4.080 3 N -0.242 5.242 4 C -0.070 4.070 5 C -0.013 4.013 6 O -0.289 6.289 7 C 0.110 3.890 8 C -0.629 4.629 9 H 0.079 0.921 10 C -0.187 4.187 11 N -0.551 5.551 12 Si 0.909 3.091 13 H -0.213 1.213 14 H -0.209 1.209 15 H -0.212 1.212 16 C -0.043 4.043 17 C -0.154 4.154 18 H 0.133 0.867 19 C -0.219 4.219 20 C -0.174 4.174 21 H 0.120 0.880 22 C -0.179 4.179 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.611 1.539 -15.785 18.545 hybrid contribution -2.585 -0.066 -0.719 2.684 sum -12.195 1.473 -16.504 20.574 Atomic orbital electron populations 1.22431 0.98959 1.02014 1.01662 1.22181 0.92058 0.90679 1.03085 1.62031 1.58844 1.01792 1.01558 1.22182 0.95870 0.98541 0.90430 1.22283 0.85815 0.98300 0.94942 1.87984 1.16985 1.81212 1.42741 1.20261 0.94248 0.92256 0.82236 1.21933 0.91459 1.41937 1.07578 0.92090 1.25920 1.06873 0.93911 0.92018 1.70773 1.14441 1.39256 1.30637 0.83378 0.73510 0.76326 0.75928 1.21288 1.20930 1.21236 1.21645 0.95715 0.98307 0.88591 1.22403 1.01471 1.02943 0.88539 0.86741 1.23160 1.00069 0.94757 1.03881 1.22348 1.01058 0.94142 0.99847 0.87972 1.21329 0.97754 0.97313 1.01485 0.92274 0.92430 0.92825 0.90682 0.90375 0.93836 0.90344 0.94558 0.94535 0.98991 0.99101 0.92365 0.94711 0.90749 0.89116 0.89288 0.92089 0.92455 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 9.12 37.16 0.34 -1.81 16 2 C 0.05 0.66 5.64 -3.83 -0.02 0.64 16 3 N -0.52 -7.99 4.61 -234.62 -1.08 -9.07 16 4 C 0.06 0.89 5.00 -3.82 -0.02 0.87 16 5 C 0.06 1.24 5.99 37.16 0.22 1.46 16 6 O -0.37 -9.36 10.27 -35.23 -0.36 -9.72 16 7 C 0.18 5.22 5.00 36.00 0.18 5.40 16 8 C -0.59 -18.15 9.43 -34.44 -0.32 -18.47 16 9 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 10 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 11 N -0.91 -28.66 13.65 55.43 0.76 -27.91 16 12 Si 1.08 26.16 29.90 -169.99 -5.08 21.08 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.09 1.08 4.22 -3.83 -0.02 1.06 16 17 C -0.13 -1.63 5.03 -90.62 -0.46 -2.08 16 18 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 19 C -0.18 -1.82 9.82 -26.74 -0.26 -2.09 16 20 C -0.16 -1.56 6.41 -90.62 -0.58 -2.14 16 21 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 22 C -0.12 -1.07 9.20 37.16 0.34 -0.72 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 25 H 0.05 0.56 6.24 -51.93 -0.32 0.24 16 26 H 0.07 0.98 7.32 -51.93 -0.38 0.60 16 27 H 0.08 1.23 6.59 -51.93 -0.34 0.89 16 28 H 0.04 0.57 6.01 -51.93 -0.31 0.26 16 29 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 30 H 0.04 0.68 6.43 -51.93 -0.33 0.35 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H -0.01 -0.22 8.01 -51.93 -0.42 -0.63 16 33 H -0.01 -0.25 8.01 -51.93 -0.42 -0.66 16 34 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 35 H 0.03 0.40 5.82 -51.93 -0.30 0.10 16 36 H 0.07 0.95 7.48 -51.93 -0.39 0.56 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.84 7.94 -51.93 -0.41 0.43 16 39 H 0.06 0.54 7.87 -51.93 -0.41 0.14 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -32.64 323.98 -8.81 -41.45 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.23 Total: -3.21 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.69 Total: -17.51 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.33 Total: -36.98 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.36 Total: -9.72 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.64 -8.81 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698363276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.036 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds