Wall clock time and date at job start Mon Mar 30 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47636 * 2 1 4 4 C 1.46901 * 110.99422 * 55.30792 * 3 2 1 5 5 C 1.53002 * 109.47239 * 66.05283 * 4 3 2 6 6 O 1.42900 * 109.47059 * 64.99473 * 5 4 3 7 7 C 1.42900 * 113.99961 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47453 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99933 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00738 * 359.97438 * 10 8 7 12 12 Si 1.86813 * 119.99901 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47071 * 270.00000 * 12 10 8 14 14 H 1.48497 * 109.47139 * 149.99552 * 12 10 8 15 15 H 1.48505 * 109.46647 * 29.99764 * 12 10 8 16 16 C 1.46898 * 110.99780 * 291.35963 * 3 2 1 17 17 C 1.52999 * 109.47151 * 287.51727 * 16 3 2 18 18 H 1.09002 * 115.54791 * 329.47283 * 17 16 3 19 19 C 1.52995 * 117.49837 * 115.18252 * 17 16 3 20 20 C 1.52996 * 60.00185 * 107.49095 * 19 17 16 21 21 H 1.08998 * 117.50133 * 107.49325 * 20 19 17 22 22 C 1.53000 * 117.51674 * 252.52109 * 20 19 17 23 23 H 1.09005 * 109.47236 * 174.57652 * 1 2 3 24 24 H 1.08998 * 109.46731 * 294.57534 * 1 2 3 25 25 H 1.08995 * 109.47270 * 54.57000 * 1 2 3 26 26 H 1.09007 * 109.46903 * 240.00033 * 2 1 3 27 27 H 1.08998 * 109.47289 * 120.00402 * 2 1 3 28 28 H 1.08999 * 109.47631 * 306.05105 * 4 3 2 29 29 H 1.09004 * 109.46871 * 186.04961 * 4 3 2 30 30 H 1.09005 * 109.46935 * 304.99896 * 5 4 3 31 31 H 1.09001 * 109.47386 * 184.99756 * 5 4 3 32 32 H 1.09006 * 109.47045 * 59.99614 * 7 6 5 33 33 H 1.08998 * 109.46957 * 300.00524 * 7 6 5 34 34 H 0.97005 * 119.99204 * 0.02562 * 11 10 8 35 35 H 1.09003 * 109.47229 * 47.52013 * 16 3 2 36 36 H 1.09004 * 109.47079 * 167.52037 * 16 3 2 37 37 H 1.09003 * 117.49921 * 214.98202 * 19 17 16 38 38 H 1.09004 * 117.50230 * 359.97438 * 19 17 16 39 39 H 1.08997 * 109.47812 * 128.62675 * 22 20 19 40 40 H 1.09004 * 109.47225 * 248.63174 * 22 20 19 41 41 H 1.08998 * 109.47198 * 8.62437 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.4593 2.1414 1.1277 5 6 1.9918 1.5671 2.4420 6 8 3.4042 1.7721 2.5139 7 6 4.0045 1.2690 3.7091 8 6 5.4869 1.5385 3.6787 9 1 5.9266 2.0432 2.8311 10 6 6.2818 1.1400 4.7323 11 7 5.7464 0.5250 5.7642 12 14 8.1195 1.4735 4.6943 13 1 8.8174 0.3275 4.0581 14 1 8.6194 1.6494 6.0815 15 1 8.3823 2.7087 3.9130 16 6 1.7243 2.0477 -1.2772 17 6 2.6410 1.4875 -2.3666 18 1 3.6217 1.1521 -2.0291 19 6 1.9855 0.7148 -3.5129 20 6 2.5497 2.1155 -3.7587 21 1 3.4701 2.1930 -4.3373 22 6 1.5490 3.2562 -3.9548 23 1 -0.3634 -1.0231 -0.0971 24 1 -0.3633 0.4274 0.9346 25 1 -0.3633 0.5957 -0.8373 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.3721 2.0651 1.1119 29 1 1.7513 3.1882 1.0439 30 1 1.7771 0.4993 2.4854 31 1 1.5087 2.0692 3.2802 32 1 3.8314 0.1950 3.7784 33 1 3.5631 1.7646 4.5737 34 1 4.7922 0.3515 5.7838 35 1 0.6844 1.8664 -1.5487 36 1 1.8921 3.1202 -1.1774 37 1 2.5349 -0.1294 -3.9298 38 1 0.9012 0.6052 -3.4909 39 1 1.7988 4.0781 -3.2839 40 1 1.5920 3.6039 -4.9870 41 1 0.5432 2.8993 -3.7333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698363276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:04 Heat of formation + Delta-G solvation = -52.290834 kcal Electronic energy + Delta-G solvation = -17741.002264 eV Core-core repulsion = 15041.627937 eV Total energy + Delta-G solvation = -2699.374326 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19526 -38.76273 -37.47631 -35.18543 -31.66162 -30.92228 -29.29038 -28.45971 -26.47492 -24.81838 -24.51794 -22.39750 -21.23095 -19.96561 -19.17281 -17.75586 -17.56129 -16.91914 -16.15678 -15.79243 -15.70705 -15.45012 -14.99441 -14.44739 -14.13447 -14.07846 -13.89599 -13.52061 -13.45704 -13.12120 -12.90290 -12.73900 -12.63389 -12.50882 -12.29749 -12.04568 -11.92208 -11.88081 -11.62458 -10.84197 -10.83423 -10.72994 -10.62647 -10.30862 -9.10578 -8.83557 -6.53720 1.51999 1.62031 1.82345 2.49694 2.75575 3.00431 3.03597 3.11933 3.82008 3.92529 3.99292 4.06385 4.11542 4.13974 4.31401 4.37705 4.42472 4.44846 4.48374 4.55808 4.56648 4.68341 4.80081 4.82601 4.90440 4.90678 4.96999 4.99739 5.03199 5.06354 5.20465 5.27873 5.37113 5.44945 5.69705 5.92802 6.16617 6.25332 6.34320 6.72684 7.27303 8.57592 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.004788 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.029162 B = 5846.963513 C = 6463.875300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 N -0.550 5.550 4 C 0.066 3.934 5 C 0.056 3.944 6 O -0.389 6.389 7 C 0.196 3.804 8 C -0.621 4.621 9 H 0.050 0.950 10 C -0.029 4.029 11 N -0.929 5.929 12 Si 1.130 2.870 13 H -0.268 1.268 14 H -0.273 1.273 15 H -0.271 1.271 16 C 0.093 3.907 17 C -0.157 4.157 18 H 0.085 0.915 19 C -0.168 4.168 20 C -0.148 4.148 21 H 0.104 0.896 22 C -0.121 4.121 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.046 0.954 32 H -0.023 1.023 33 H -0.020 1.020 34 H 0.255 0.745 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.215 2.017 -18.064 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.078 4.078 3 N -0.274 5.274 4 C -0.061 4.061 5 C -0.022 4.022 6 O -0.308 6.308 7 C 0.121 3.879 8 C -0.658 4.658 9 H 0.069 0.931 10 C -0.226 4.226 11 N -0.566 5.566 12 Si 0.949 3.051 13 H -0.193 1.193 14 H -0.198 1.198 15 H -0.195 1.195 16 C -0.034 4.034 17 C -0.176 4.176 18 H 0.103 0.897 19 C -0.205 4.205 20 C -0.167 4.167 21 H 0.122 0.878 22 C -0.178 4.178 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.064 0.936 32 H -0.005 1.005 33 H -0.002 1.002 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.231 1.913 -17.300 20.189 hybrid contribution -2.480 -0.207 -0.295 2.506 sum -12.711 1.706 -17.595 21.773 Atomic orbital electron populations 1.22329 0.96501 1.03196 1.02049 1.22107 0.94057 0.89752 1.01878 1.61957 1.60134 1.02630 1.02637 1.22092 0.97428 0.97919 0.88674 1.22646 0.82689 0.99068 0.97760 1.87934 1.20594 1.81097 1.41183 1.19930 0.93722 0.91176 0.83107 1.22272 0.93013 1.42702 1.07810 0.93122 1.27614 1.11525 0.92434 0.91004 1.70900 1.13909 1.40290 1.31467 0.82794 0.67926 0.77480 0.76870 1.19313 1.19834 1.19550 1.21600 0.96743 0.97730 0.87319 1.22257 1.00477 1.05350 0.89507 0.89674 1.23209 1.00652 0.94860 1.01792 1.22457 1.01584 0.94816 0.97800 0.87783 1.21346 0.97546 0.96568 1.02299 0.90931 0.92625 0.91509 0.90312 0.93188 0.90538 0.90688 0.94337 0.93570 1.00499 1.00222 0.93585 0.92847 0.91218 0.88730 0.88070 0.92461 0.91090 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 9.12 71.98 0.66 -3.01 16 2 C 0.05 1.35 5.64 86.30 0.49 1.84 16 3 N -0.55 -16.67 4.61 -896.21 -4.13 -20.81 16 4 C 0.07 2.01 5.00 86.30 0.43 2.44 16 5 C 0.06 2.15 5.99 71.98 0.43 2.58 16 6 O -0.39 -20.18 10.27 -148.98 -1.53 -21.71 16 7 C 0.20 11.46 5.00 71.24 0.36 11.81 16 8 C -0.62 -38.89 9.43 25.60 0.24 -38.65 16 9 H 0.05 3.21 7.81 -2.91 -0.02 3.18 16 10 C -0.03 -1.72 5.46 84.65 0.46 -1.26 16 11 N -0.93 -58.81 13.65 21.45 0.29 -58.51 16 12 Si 1.13 51.95 29.90 68.60 2.05 54.00 16 13 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 C 0.09 2.24 4.22 86.30 0.36 2.60 16 17 C -0.16 -3.68 5.03 -10.80 -0.05 -3.74 16 18 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 19 C -0.17 -3.05 9.82 30.59 0.30 -2.75 16 20 C -0.15 -2.73 6.41 -10.79 -0.07 -2.80 16 21 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 22 C -0.12 -1.83 9.20 71.98 0.66 -1.16 16 23 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.05 1.14 6.53 -2.39 -0.02 1.13 16 25 H 0.07 1.18 6.24 -2.39 -0.01 1.17 16 26 H 0.08 2.03 7.32 -2.38 -0.02 2.01 16 27 H 0.05 1.61 6.59 -2.39 -0.02 1.59 16 28 H 0.08 1.82 6.01 -2.39 -0.01 1.81 16 29 H 0.07 2.31 7.86 -2.39 -0.02 2.29 16 30 H 0.04 1.47 6.43 -2.38 -0.02 1.45 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H -0.02 -1.36 8.01 -2.38 -0.02 -1.38 16 33 H -0.02 -1.18 8.01 -2.39 -0.02 -1.20 16 34 H 0.26 16.31 7.22 -92.70 -0.67 15.64 16 35 H 0.05 1.07 5.82 -2.39 -0.01 1.06 16 36 H 0.07 1.71 7.48 -2.38 -0.02 1.69 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 1.60 7.94 -2.39 -0.02 1.58 16 39 H 0.06 0.92 7.87 -2.39 -0.02 0.90 16 40 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.06 0.84 7.90 -2.39 -0.02 0.82 16 Total: -1.00 -70.77 323.98 2.02 -68.74 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.07 Total: 10.39 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.27 Total: -32.10 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -3.84 Total: -79.32 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.53 Total: -21.71 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.05 Total: 54.00 kcal Total: -70.77 2.02 -68.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698363276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.453 kcal (2) G-P(sol) polarization free energy of solvation -70.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds