Wall clock time and date at job start Mon Mar 30 2020 03:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46898 * 109.46802 * 2 1 4 4 C 1.46903 * 110.99705 * 196.33715 * 3 2 1 5 5 C 1.50698 * 109.47281 * 61.04759 * 4 3 2 6 6 H 1.08002 * 119.99489 * 359.72167 * 5 4 3 7 7 C 1.37881 * 120.00016 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99621 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46976 * 89.99973 * 9 7 5 11 11 H 1.48507 * 109.46936 * 209.99821 * 9 7 5 12 12 H 1.48500 * 109.47313 * 329.99646 * 9 7 5 13 13 C 1.46904 * 111.00013 * 72.38682 * 3 2 1 14 14 H 1.08993 * 109.47233 * 37.43110 * 13 3 2 15 15 C 1.53000 * 109.46977 * 277.43020 * 13 3 2 16 16 C 1.52994 * 109.47237 * 180.02562 * 15 13 3 17 17 C 1.53005 * 109.46873 * 60.00016 * 16 15 13 18 18 C 1.52995 * 109.47348 * 299.99739 * 17 16 15 19 19 C 1.53004 * 109.46933 * 157.43505 * 13 3 2 20 20 C 1.52998 * 109.47492 * 59.99438 * 19 13 3 21 21 O 1.42906 * 109.46941 * 299.99434 * 19 13 3 22 22 H 1.08996 * 109.46562 * 162.82541 * 1 2 3 23 23 H 1.08999 * 109.47018 * 282.82537 * 1 2 3 24 24 H 1.08994 * 109.46841 * 42.82622 * 1 2 3 25 25 H 1.09001 * 109.47346 * 240.00080 * 2 1 3 26 26 H 1.08998 * 109.47038 * 119.99883 * 2 1 3 27 27 H 1.09002 * 109.47223 * 301.04270 * 4 3 2 28 28 H 1.08998 * 109.47222 * 181.04915 * 4 3 2 29 29 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.47150 * 300.00644 * 15 13 3 31 31 H 1.09005 * 109.46872 * 59.99896 * 15 13 3 32 32 H 1.09001 * 109.47064 * 300.00474 * 16 15 13 33 33 H 1.08998 * 109.47192 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47048 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46902 * 60.00358 * 17 16 15 36 36 H 1.08993 * 109.47358 * 300.00297 * 18 17 16 37 37 H 1.09001 * 109.46992 * 179.97438 * 18 17 16 38 38 H 1.08999 * 109.46499 * 66.66268 * 20 19 13 39 39 H 1.08996 * 109.47373 * 186.66119 * 20 19 13 40 40 H 1.09001 * 109.47333 * 306.66719 * 20 19 13 41 41 H 0.96699 * 113.99710 * 180.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4360 1.4426 -0.3858 5 6 3.5996 0.8947 -1.7801 6 1 2.7382 0.5350 -2.3233 7 6 4.8497 0.8468 -2.3597 8 7 5.8993 1.2797 -1.6959 9 14 5.0525 0.1669 -4.0877 10 1 4.9108 1.2689 -5.0729 11 1 6.3974 -0.4483 -4.2229 12 1 4.0105 -0.8605 -4.3408 13 6 1.8039 2.0197 1.3072 14 1 1.9744 1.2895 2.0982 15 6 0.3664 2.5369 1.3918 16 6 0.1418 3.1985 2.7529 17 6 1.1151 4.3674 2.9186 18 6 2.5525 3.8502 2.8340 19 6 2.7771 3.1885 1.4734 20 6 2.5377 4.2135 0.3630 21 8 4.1197 2.7054 1.3944 22 1 -0.3632 -0.9818 -0.3035 23 1 -0.3633 0.2281 1.0020 24 1 -0.3633 0.7537 -0.6986 25 1 1.8935 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0267 0.8472 0.3103 28 1 3.7779 2.4773 -0.3596 29 1 6.7787 1.2463 -2.1039 30 1 0.1958 3.2671 0.6007 31 1 -0.3269 1.7042 1.2733 32 1 0.3126 2.4686 3.5443 33 1 -0.8821 3.5674 2.8131 34 1 0.9547 4.8390 3.8882 35 1 0.9443 5.0973 2.1273 36 1 2.7232 3.1204 3.6253 37 1 3.2458 4.6830 2.9516 38 1 1.5559 4.6684 0.4941 39 1 3.3052 4.9860 0.4099 40 1 2.5813 3.7163 -0.6060 41 1 4.7917 3.3938 1.4921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699715391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:01 Heat of formation + Delta-G solvation = -36.087839 kcal Electronic energy + Delta-G solvation = -19449.420088 eV Core-core repulsion = 16750.748376 eV Total energy + Delta-G solvation = -2698.671712 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.86938 -35.69911 -35.24198 -32.44499 -30.54742 -29.86071 -28.98396 -26.92450 -25.23925 -22.41513 -21.87354 -21.72243 -19.76597 -18.23532 -16.71796 -15.91654 -15.30319 -14.85196 -14.49122 -14.41758 -13.57011 -13.43394 -13.37251 -13.08862 -12.47603 -12.31233 -11.89766 -11.68174 -11.43406 -11.29195 -11.09324 -10.98452 -10.94852 -10.84328 -10.55900 -10.42323 -10.33927 -10.16707 -9.95232 -9.57673 -9.27819 -9.23421 -8.50288 -7.99251 -6.97933 -5.83315 -3.82865 3.39172 3.45131 3.48639 4.53430 4.69358 4.85931 4.99283 5.26221 5.30152 5.49741 5.50518 5.60143 5.65796 5.73106 5.75670 5.84538 5.88887 6.03612 6.10487 6.14334 6.21980 6.27370 6.34873 6.35616 6.39686 6.46404 6.56829 6.69445 6.79615 6.88718 6.98281 7.08042 7.72758 7.89117 7.97751 8.33863 8.46616 8.50270 8.85903 9.28423 9.78122 11.25689 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.008309 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.473350 B = 3369.066983 C = 4004.622052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 N -0.531 5.531 4 C 0.186 3.814 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.893 5.893 9 Si 0.887 3.113 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.104 3.896 14 H 0.032 0.968 15 C -0.124 4.124 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.142 4.142 19 C 0.131 3.869 20 C -0.177 4.177 21 O -0.529 6.529 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.014 0.986 27 H -0.004 1.004 28 H 0.075 0.925 29 H 0.256 0.744 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 5.199 8.558 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 N -0.256 5.256 4 C 0.062 3.938 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.716 3.284 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.006 4.006 14 H 0.050 0.950 15 C -0.161 4.161 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.181 4.181 19 C 0.090 3.910 20 C -0.234 4.234 21 O -0.334 6.334 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.032 0.968 27 H 0.014 0.986 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.631 4.900 8.097 13.503 hybrid contribution 1.051 -0.314 -0.189 1.113 sum -8.580 4.586 7.908 12.538 Atomic orbital electron populations 1.22105 0.97250 1.00633 1.00714 1.22025 0.93643 0.90912 1.00824 1.62333 1.24161 1.15259 1.23821 1.20317 0.80014 1.00053 0.93404 1.21445 0.92794 1.40202 1.00503 0.92550 1.24923 0.96075 0.96156 0.97361 1.69998 0.98632 1.47768 1.36861 0.86679 0.77094 0.79142 0.85499 1.20900 1.21540 1.20139 1.21481 0.92808 0.94040 0.92239 0.95044 1.22024 0.96713 1.01122 0.96277 1.21576 0.98504 0.97503 0.98244 1.21558 0.94658 0.98086 1.01188 1.22239 0.96966 1.00181 0.98685 1.21090 0.83758 0.93656 0.92456 1.22620 1.00529 0.98376 1.01840 1.87278 1.14202 1.37277 1.94650 0.93789 0.93341 0.91924 0.89700 0.96770 0.98649 0.90727 0.93446 0.91125 0.90308 0.92510 0.92300 0.92603 0.91505 0.91877 0.92164 0.92423 0.93748 0.88938 0.79554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.49 37.16 0.32 -2.12 16 2 C 0.05 1.12 5.50 -3.82 -0.02 1.10 16 3 N -0.53 -11.59 3.92 -228.08 -0.89 -12.48 16 4 C 0.19 4.88 2.66 -4.98 -0.01 4.87 16 5 C -0.51 -14.61 8.26 -34.44 -0.28 -14.89 16 6 H 0.06 1.61 6.89 -52.49 -0.36 1.25 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.10 1.92 1.66 -67.71 -0.11 1.81 16 14 H 0.03 0.63 7.64 -51.93 -0.40 0.23 16 15 C -0.12 -1.86 4.79 -26.73 -0.13 -1.99 16 16 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 17 C -0.12 -1.42 5.65 -26.73 -0.15 -1.57 16 18 C -0.14 -1.99 5.07 -26.76 -0.14 -2.13 16 19 C 0.13 2.29 0.73 -90.64 -0.07 2.22 16 20 C -0.18 -3.04 7.47 37.16 0.28 -2.76 16 21 O -0.53 -10.81 8.65 -35.23 -0.30 -11.11 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.71 5.86 -51.93 -0.30 0.41 16 24 H 0.06 1.04 8.13 -51.93 -0.42 0.61 16 25 H 0.08 1.94 6.19 -51.93 -0.32 1.61 16 26 H 0.01 0.29 7.75 -51.93 -0.40 -0.11 16 27 H 0.00 -0.13 7.38 -51.93 -0.38 -0.51 16 28 H 0.08 2.00 3.63 -51.48 -0.19 1.81 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.07 1.10 6.58 -51.93 -0.34 0.75 16 31 H 0.08 1.15 4.26 -51.93 -0.22 0.93 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.80 6.29 -51.93 -0.33 0.47 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.87 4.84 -51.93 -0.25 0.62 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.94 5.93 -51.93 -0.31 1.64 16 41 H 0.36 6.12 9.04 46.04 0.42 6.54 16 LS Contribution 294.07 15.07 4.43 4.43 Total: -1.00 -30.74 294.07 -7.53 -38.27 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.90 Total: 5.48 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.57 Total: -15.59 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.16 Total: -38.59 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.30 Total: -11.11 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.74 -7.53 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699715391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.180 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds