Wall clock time and date at job start Mon Mar 30 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46898 * 109.46802 * 2 1 4 4 C 1.46903 * 110.99705 * 196.33715 * 3 2 1 5 5 C 1.50698 * 109.47281 * 61.04759 * 4 3 2 6 6 H 1.08002 * 119.99489 * 359.72167 * 5 4 3 7 7 C 1.37881 * 120.00016 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99621 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46976 * 89.99973 * 9 7 5 11 11 H 1.48507 * 109.46936 * 209.99821 * 9 7 5 12 12 H 1.48500 * 109.47313 * 329.99646 * 9 7 5 13 13 C 1.46904 * 111.00013 * 72.38682 * 3 2 1 14 14 H 1.08993 * 109.47233 * 37.43110 * 13 3 2 15 15 C 1.53000 * 109.46977 * 277.43020 * 13 3 2 16 16 C 1.52994 * 109.47237 * 180.02562 * 15 13 3 17 17 C 1.53005 * 109.46873 * 60.00016 * 16 15 13 18 18 C 1.52995 * 109.47348 * 299.99739 * 17 16 15 19 19 C 1.53004 * 109.46933 * 157.43505 * 13 3 2 20 20 C 1.52998 * 109.47492 * 59.99438 * 19 13 3 21 21 O 1.42906 * 109.46941 * 299.99434 * 19 13 3 22 22 H 1.08996 * 109.46562 * 162.82541 * 1 2 3 23 23 H 1.08999 * 109.47018 * 282.82537 * 1 2 3 24 24 H 1.08994 * 109.46841 * 42.82622 * 1 2 3 25 25 H 1.09001 * 109.47346 * 240.00080 * 2 1 3 26 26 H 1.08998 * 109.47038 * 119.99883 * 2 1 3 27 27 H 1.09002 * 109.47223 * 301.04270 * 4 3 2 28 28 H 1.08998 * 109.47222 * 181.04915 * 4 3 2 29 29 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.47150 * 300.00644 * 15 13 3 31 31 H 1.09005 * 109.46872 * 59.99896 * 15 13 3 32 32 H 1.09001 * 109.47064 * 300.00474 * 16 15 13 33 33 H 1.08998 * 109.47192 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47048 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46902 * 60.00358 * 17 16 15 36 36 H 1.08993 * 109.47358 * 300.00297 * 18 17 16 37 37 H 1.09001 * 109.46992 * 179.97438 * 18 17 16 38 38 H 1.08999 * 109.46499 * 66.66268 * 20 19 13 39 39 H 1.08996 * 109.47373 * 186.66119 * 20 19 13 40 40 H 1.09001 * 109.47333 * 306.66719 * 20 19 13 41 41 H 0.96699 * 113.99710 * 180.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4360 1.4426 -0.3858 5 6 3.5996 0.8947 -1.7801 6 1 2.7382 0.5350 -2.3233 7 6 4.8497 0.8468 -2.3597 8 7 5.8993 1.2797 -1.6959 9 14 5.0525 0.1669 -4.0877 10 1 4.9108 1.2689 -5.0729 11 1 6.3974 -0.4483 -4.2229 12 1 4.0105 -0.8605 -4.3408 13 6 1.8039 2.0197 1.3072 14 1 1.9744 1.2895 2.0982 15 6 0.3664 2.5369 1.3918 16 6 0.1418 3.1985 2.7529 17 6 1.1151 4.3674 2.9186 18 6 2.5525 3.8502 2.8340 19 6 2.7771 3.1885 1.4734 20 6 2.5377 4.2135 0.3630 21 8 4.1197 2.7054 1.3944 22 1 -0.3632 -0.9818 -0.3035 23 1 -0.3633 0.2281 1.0020 24 1 -0.3633 0.7537 -0.6986 25 1 1.8935 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0267 0.8472 0.3103 28 1 3.7779 2.4773 -0.3596 29 1 6.7787 1.2463 -2.1039 30 1 0.1958 3.2671 0.6007 31 1 -0.3269 1.7042 1.2733 32 1 0.3126 2.4686 3.5443 33 1 -0.8821 3.5674 2.8131 34 1 0.9547 4.8390 3.8882 35 1 0.9443 5.0973 2.1273 36 1 2.7232 3.1204 3.6253 37 1 3.2458 4.6830 2.9516 38 1 1.5559 4.6684 0.4941 39 1 3.3052 4.9860 0.4099 40 1 2.5813 3.7163 -0.6060 41 1 4.7917 3.3938 1.4921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699715391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:00 Heat of formation + Delta-G solvation = -57.777794 kcal Electronic energy + Delta-G solvation = -19450.360635 eV Core-core repulsion = 16750.748376 eV Total energy + Delta-G solvation = -2699.612259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28863 -37.32344 -36.61075 -34.58404 -32.04572 -31.14085 -30.57268 -28.53393 -26.95099 -24.17071 -23.31974 -23.02223 -21.32137 -19.60709 -18.56494 -17.66676 -16.90554 -16.42627 -16.32376 -15.75450 -15.19253 -14.90761 -14.64764 -14.34477 -14.09328 -13.93404 -13.60040 -13.10205 -12.87465 -12.85749 -12.69867 -12.53568 -12.44362 -12.39806 -12.17969 -12.08452 -11.77216 -11.64905 -11.45705 -11.13404 -11.00250 -10.62282 -10.57058 -9.89485 -8.82544 -8.06330 -6.14211 1.39381 1.40634 1.50923 2.44488 3.22656 3.33118 3.42248 3.80162 4.04975 4.11504 4.28014 4.30988 4.35599 4.41624 4.50575 4.56167 4.61649 4.76752 4.78083 4.87266 4.94704 5.04083 5.11734 5.19561 5.22792 5.25072 5.27216 5.34746 5.37487 5.50998 5.54904 5.63795 5.69090 5.76021 5.88709 6.27726 6.55648 6.89589 6.99612 7.10954 7.51751 9.02068 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.008309 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.473350 B = 3369.066983 C = 4004.622052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.209 3.791 5 C -0.530 4.530 6 H 0.051 0.949 7 C 0.002 3.998 8 N -0.924 5.924 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.099 3.901 14 H 0.012 0.988 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.134 4.134 19 C 0.122 3.878 20 C -0.167 4.167 21 O -0.564 6.564 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.002 0.998 27 H -0.055 1.055 28 H 0.070 0.930 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.310 6.261 8.963 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 N -0.258 5.258 4 C 0.084 3.916 5 C -0.568 4.568 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.565 5.565 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.195 1.195 13 C -0.010 4.010 14 H 0.030 0.970 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.172 4.172 19 C 0.082 3.918 20 C -0.224 4.224 21 O -0.371 6.371 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.020 0.980 27 H -0.037 1.037 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.700 5.968 8.511 15.651 hybrid contribution 1.704 -0.663 -0.270 1.848 sum -9.997 5.305 8.241 14.000 Atomic orbital electron populations 1.21968 0.93211 1.01917 1.02099 1.22061 0.96907 0.89996 0.98756 1.62343 1.21068 1.16050 1.26288 1.19921 0.82057 0.98408 0.91236 1.21793 0.92930 1.40401 1.01704 0.93048 1.25777 0.95724 0.96411 1.01628 1.70135 0.99042 1.48663 1.38662 0.85589 0.77157 0.78683 0.80371 1.19870 1.21022 1.19479 1.21708 0.95822 0.93945 0.89555 0.97039 1.21974 0.93718 1.01414 0.98265 1.21576 1.00232 0.97485 0.96096 1.21580 0.92635 0.98014 1.02930 1.22145 0.99210 1.00187 0.95687 1.21324 0.82132 0.93478 0.94843 1.22492 1.02416 0.98184 0.99309 1.87218 1.16016 1.38837 1.94999 0.91813 0.91243 0.91932 0.92739 0.97960 1.03714 0.91252 0.93324 0.91314 0.89725 0.92422 0.89472 0.89962 0.90901 0.92537 0.90653 0.89870 0.92641 0.93252 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.49 71.99 0.61 -3.59 16 2 C 0.05 2.18 5.50 86.31 0.47 2.65 16 3 N -0.53 -24.04 3.92 -875.50 -3.43 -27.48 16 4 C 0.21 11.57 2.66 85.56 0.23 11.79 16 5 C -0.53 -31.49 8.26 25.60 0.21 -31.28 16 6 H 0.05 3.03 6.89 -2.91 -0.02 3.01 16 7 C 0.00 0.14 5.46 84.66 0.46 0.60 16 8 N -0.92 -57.33 13.29 21.45 0.28 -57.05 16 9 Si 0.96 46.23 29.54 68.60 2.03 48.26 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.10 3.67 1.66 44.92 0.07 3.75 16 14 H 0.01 0.48 7.64 -2.39 -0.02 0.46 16 15 C -0.12 -3.24 4.79 30.59 0.15 -3.09 16 16 C -0.12 -2.45 5.92 30.59 0.18 -2.27 16 17 C -0.11 -2.33 5.65 30.59 0.17 -2.15 16 18 C -0.13 -3.50 5.07 30.58 0.15 -3.34 16 19 C 0.12 4.27 0.73 -10.81 -0.01 4.27 16 20 C -0.17 -5.67 7.47 71.98 0.54 -5.13 16 21 O -0.56 -24.16 8.65 -148.98 -1.29 -25.45 16 22 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.07 1.88 5.86 -2.39 -0.01 1.86 16 24 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 25 H 0.05 2.60 6.19 -2.39 -0.01 2.58 16 26 H 0.00 0.10 7.75 -2.39 -0.02 0.08 16 27 H -0.05 -3.52 7.38 -2.39 -0.02 -3.54 16 28 H 0.07 3.92 3.63 -2.10 -0.01 3.91 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.07 1.96 6.58 -2.39 -0.02 1.95 16 31 H 0.08 2.24 4.26 -2.38 -0.01 2.23 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.43 6.29 -2.39 -0.01 1.41 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 2.34 4.84 -2.39 -0.01 2.33 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 2.11 5.93 -2.39 -0.01 2.10 16 41 H 0.37 13.24 9.04 -73.27 -0.66 12.58 16 Total: -1.00 -69.59 294.07 1.19 -68.40 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.35 Total: 21.11 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 3.25 Total: -27.80 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.15 Total: -84.52 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.29 Total: -25.45 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -69.59 1.19 -68.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699715391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.624 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds