Wall clock time and date at job start Mon Mar 30 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99898 * 2 1 4 4 C 1.53008 * 109.46903 * 66.04212 * 3 2 1 5 5 C 1.52996 * 109.46808 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46929 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99302 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00436 * 179.72505 * 7 6 5 10 10 N 1.31514 * 120.00481 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99745 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47209 * 90.00365 * 11 9 7 13 13 H 1.48506 * 109.47294 * 210.00213 * 11 9 7 14 14 H 1.48501 * 109.47275 * 330.00116 * 11 9 7 15 15 C 1.46895 * 111.00215 * 236.04981 * 2 1 3 16 16 C 1.53004 * 109.46815 * 293.94986 * 15 2 1 17 17 H 1.08995 * 112.85100 * 314.66813 * 16 15 2 18 18 C 1.53784 * 113.61447 * 85.86684 * 16 15 2 19 19 C 1.53950 * 87.02186 * 139.95230 * 18 16 15 20 20 H 1.08997 * 113.54242 * 89.18401 * 19 18 16 21 21 O 1.42902 * 113.74325 * 220.05781 * 19 18 16 22 22 C 1.53778 * 113.61381 * 183.47145 * 16 15 2 23 23 H 1.08996 * 109.47240 * 60.00240 * 1 2 3 24 24 H 1.09003 * 109.46628 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47421 * 299.99916 * 1 2 3 26 26 H 1.08996 * 109.46785 * 306.04750 * 3 2 1 27 27 H 1.08994 * 109.47303 * 186.04532 * 3 2 1 28 28 H 1.09000 * 109.46719 * 60.00190 * 4 3 2 29 29 H 1.08994 * 109.47402 * 300.00259 * 4 3 2 30 30 H 1.09000 * 109.47441 * 60.00491 * 5 4 3 31 31 H 1.09002 * 109.47087 * 299.99937 * 5 4 3 32 32 H 1.09001 * 109.47671 * 60.00109 * 6 5 4 33 33 H 1.08998 * 109.47454 * 300.00107 * 6 5 4 34 34 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.47397 * 53.95139 * 15 2 1 36 36 H 1.09003 * 109.47489 * 173.95813 * 15 2 1 37 37 H 1.08997 * 113.61131 * 254.53005 * 18 16 15 38 38 H 1.09001 * 113.61098 * 25.42557 * 18 16 15 39 39 H 0.96698 * 113.99919 * 277.59482 * 21 19 18 40 40 H 1.09006 * 113.61606 * 334.56780 * 22 16 15 41 41 H 1.09004 * 113.61621 * 105.47168 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1791 3.4861 1.3180 6 6 1.8155 4.1719 2.6365 7 6 2.3556 5.5788 2.6366 8 1 2.9036 5.9468 1.7818 9 6 2.1455 6.3979 3.7256 10 7 2.6163 7.6259 3.7254 11 14 1.1909 5.7638 5.2007 12 1 2.1298 5.1378 6.1661 13 1 0.4864 6.8941 5.8576 14 1 0.1976 4.7555 4.7514 15 6 1.9955 -0.7659 -1.1376 16 6 1.6316 -2.2426 -0.9703 17 1 1.8126 -2.6114 0.0393 18 6 0.2389 -2.5994 -1.5161 19 6 0.8689 -3.8992 -2.0487 20 1 0.8403 -4.7216 -1.3341 21 8 0.4027 -4.2750 -3.3462 22 6 2.2108 -3.1481 -2.0700 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.5611 1.9273 -0.8309 27 1 3.0797 1.3445 -0.1082 28 1 2.0657 1.5016 2.1492 29 1 0.5471 2.0845 1.4265 30 1 1.7444 4.0418 0.4872 31 1 3.2634 3.4594 1.2096 32 1 2.2505 3.6162 3.4672 33 1 0.7313 4.1985 2.7454 34 1 2.4682 8.2022 4.4914 35 1 1.5612 -0.3872 -2.0628 36 1 3.0798 -0.6611 -1.1756 37 1 -0.5067 -2.7616 -0.7377 38 1 -0.1073 -1.9280 -2.3018 39 1 -0.4408 -4.7477 -3.3394 40 1 2.4047 -2.6270 -3.0076 41 1 3.0549 -3.7527 -1.7382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703735323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:05 Heat of formation + Delta-G solvation = -46.009923 kcal Electronic energy + Delta-G solvation = -17089.605862 eV Core-core repulsion = 14390.503897 eV Total energy + Delta-G solvation = -2699.101966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92726 -37.52899 -35.39681 -34.18597 -32.16713 -29.39442 -28.18388 -26.32745 -25.66750 -23.78854 -21.70406 -20.58032 -20.01399 -19.70410 -17.78848 -16.62795 -16.31267 -15.46999 -15.23161 -14.93362 -14.33072 -14.21066 -13.81005 -13.50341 -12.79559 -12.64626 -12.52429 -12.27427 -12.11744 -11.79547 -11.73902 -11.54597 -11.30553 -11.04062 -10.96924 -10.72831 -10.48816 -10.39826 -10.01110 -9.84626 -9.61974 -9.42467 -9.11319 -8.49677 -8.30799 -6.00345 -3.97792 3.33962 3.40813 3.45522 3.73830 4.01391 4.27870 4.30497 4.49205 4.56779 4.58198 5.07446 5.15276 5.20768 5.33573 5.36448 5.40546 5.45236 5.46235 5.51887 5.57161 5.68100 5.76402 5.86228 5.88401 5.95030 6.09006 6.13914 6.18599 6.43862 6.70169 6.81375 6.95310 7.10661 7.16978 7.29336 7.38420 7.51312 7.85099 8.59209 9.05050 9.62758 11.13332 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.065669 B = 0.003204 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.276742 B = 8736.110168 C = 8940.164799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.542 5.542 3 C 0.055 3.945 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.014 4.014 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.906 5.906 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.066 3.934 16 C -0.102 4.102 17 H 0.101 0.899 18 C -0.166 4.166 19 C 0.073 3.927 20 H 0.081 0.919 21 O -0.562 6.562 22 C -0.124 4.124 23 H 0.021 0.979 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.011 0.989 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.376 0.624 40 H 0.089 0.911 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 -23.814 -10.802 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.265 5.265 3 C -0.072 4.072 4 C -0.154 4.154 5 C -0.140 4.140 6 C -0.051 4.051 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.137 4.137 10 N -0.546 5.546 11 Si 0.709 3.291 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.062 4.062 16 C -0.121 4.121 17 H 0.119 0.881 18 C -0.203 4.203 19 C 0.014 3.986 20 H 0.098 0.902 21 O -0.367 6.367 22 C -0.162 4.162 23 H 0.040 0.960 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.223 0.777 40 H 0.107 0.893 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.319 -23.576 -10.449 26.147 hybrid contribution -1.282 0.018 0.314 1.319 sum -5.601 -23.558 -10.136 26.250 Atomic orbital electron populations 1.22570 0.87824 1.01926 1.00836 1.62036 1.07861 1.14471 1.42158 1.22241 0.99857 0.86948 0.98184 1.21697 1.00757 0.96809 0.96132 1.21425 0.99950 0.92744 0.99867 1.19566 0.96333 0.96164 0.93045 1.21199 1.35059 0.95719 1.03738 0.91145 1.25052 0.95421 0.94735 0.98469 1.69922 1.46529 1.07152 1.30954 0.86755 0.80792 0.78567 0.83027 1.20305 1.21483 1.19010 1.22059 1.00183 0.92269 0.91729 1.22334 0.95787 0.94832 0.99098 0.88069 1.23874 0.97373 0.98360 1.00726 1.23424 0.96008 0.94605 0.84533 0.90168 1.86532 1.42487 1.78876 1.28854 1.23088 0.95859 0.97627 0.99628 0.96015 0.91182 0.91059 0.95083 0.90952 0.91719 0.92617 0.93112 0.92872 0.97084 0.96813 0.92820 0.94868 0.90620 0.91137 0.89513 0.77688 0.89280 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.85 60.07 0.53 0.72 16 2 N -0.54 -6.76 4.76 -242.91 -1.16 -7.91 16 3 C 0.06 0.77 4.96 -3.82 -0.02 0.76 16 4 C -0.12 -1.92 5.14 -26.73 -0.14 -2.05 16 5 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 6 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16 11 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 15 C 0.07 0.69 4.87 -3.82 -0.02 0.67 16 16 C -0.10 -0.89 3.50 -89.81 -0.31 -1.20 16 17 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 18 C -0.17 -1.31 5.67 -25.83 -0.15 -1.46 16 19 C 0.07 0.55 5.21 -25.83 -0.13 0.42 16 20 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 21 O -0.56 -4.65 13.68 -35.23 -0.48 -5.13 16 22 C -0.12 -1.01 7.47 -25.92 -0.19 -1.20 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.07 0.69 4.98 -51.93 -0.26 0.43 16 25 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 26 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.01 0.27 7.58 -51.93 -0.39 -0.13 16 33 H 0.01 0.34 7.18 -51.93 -0.37 -0.04 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.03 0.36 7.85 -51.93 -0.41 -0.05 16 36 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 37 H 0.07 0.51 7.21 -51.93 -0.37 0.14 16 38 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 39 H 0.38 1.49 9.12 45.56 0.42 1.90 16 40 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -32.32 320.85 -8.50 -40.82 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.69 Total: -2.68 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -1.11 Total: -19.73 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.38 Total: -35.68 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.48 Total: -5.13 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.32 -8.50 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703735323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.186 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds