Wall clock time and date at job start Mon Mar 30 2020 03:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99898 * 2 1 4 4 C 1.53008 * 109.46903 * 66.04212 * 3 2 1 5 5 C 1.52996 * 109.46808 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46929 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99302 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00436 * 179.72505 * 7 6 5 10 10 N 1.31514 * 120.00481 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99745 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47209 * 90.00365 * 11 9 7 13 13 H 1.48506 * 109.47294 * 210.00213 * 11 9 7 14 14 H 1.48501 * 109.47275 * 330.00116 * 11 9 7 15 15 C 1.46895 * 111.00215 * 236.04981 * 2 1 3 16 16 C 1.53004 * 109.46815 * 293.94986 * 15 2 1 17 17 H 1.08995 * 112.85100 * 314.66813 * 16 15 2 18 18 C 1.53784 * 113.61447 * 85.86684 * 16 15 2 19 19 C 1.53950 * 87.02186 * 139.95230 * 18 16 15 20 20 H 1.08997 * 113.54242 * 89.18401 * 19 18 16 21 21 O 1.42902 * 113.74325 * 220.05781 * 19 18 16 22 22 C 1.53778 * 113.61381 * 183.47145 * 16 15 2 23 23 H 1.08996 * 109.47240 * 60.00240 * 1 2 3 24 24 H 1.09003 * 109.46628 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47421 * 299.99916 * 1 2 3 26 26 H 1.08996 * 109.46785 * 306.04750 * 3 2 1 27 27 H 1.08994 * 109.47303 * 186.04532 * 3 2 1 28 28 H 1.09000 * 109.46719 * 60.00190 * 4 3 2 29 29 H 1.08994 * 109.47402 * 300.00259 * 4 3 2 30 30 H 1.09000 * 109.47441 * 60.00491 * 5 4 3 31 31 H 1.09002 * 109.47087 * 299.99937 * 5 4 3 32 32 H 1.09001 * 109.47671 * 60.00109 * 6 5 4 33 33 H 1.08998 * 109.47454 * 300.00107 * 6 5 4 34 34 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.47397 * 53.95139 * 15 2 1 36 36 H 1.09003 * 109.47489 * 173.95813 * 15 2 1 37 37 H 1.08997 * 113.61131 * 254.53005 * 18 16 15 38 38 H 1.09001 * 113.61098 * 25.42557 * 18 16 15 39 39 H 0.96698 * 113.99919 * 277.59482 * 21 19 18 40 40 H 1.09006 * 113.61606 * 334.56780 * 22 16 15 41 41 H 1.09004 * 113.61621 * 105.47168 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1791 3.4861 1.3180 6 6 1.8155 4.1719 2.6365 7 6 2.3556 5.5788 2.6366 8 1 2.9036 5.9468 1.7818 9 6 2.1455 6.3979 3.7256 10 7 2.6163 7.6259 3.7254 11 14 1.1909 5.7638 5.2007 12 1 2.1298 5.1378 6.1661 13 1 0.4864 6.8941 5.8576 14 1 0.1976 4.7555 4.7514 15 6 1.9955 -0.7659 -1.1376 16 6 1.6316 -2.2426 -0.9703 17 1 1.8126 -2.6114 0.0393 18 6 0.2389 -2.5994 -1.5161 19 6 0.8689 -3.8992 -2.0487 20 1 0.8403 -4.7216 -1.3341 21 8 0.4027 -4.2750 -3.3462 22 6 2.2108 -3.1481 -2.0700 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.5611 1.9273 -0.8309 27 1 3.0797 1.3445 -0.1082 28 1 2.0657 1.5016 2.1492 29 1 0.5471 2.0845 1.4265 30 1 1.7444 4.0418 0.4872 31 1 3.2634 3.4594 1.2096 32 1 2.2505 3.6162 3.4672 33 1 0.7313 4.1985 2.7454 34 1 2.4682 8.2022 4.4914 35 1 1.5612 -0.3872 -2.0628 36 1 3.0798 -0.6611 -1.1756 37 1 -0.5067 -2.7616 -0.7377 38 1 -0.1073 -1.9280 -2.3018 39 1 -0.4408 -4.7477 -3.3394 40 1 2.4047 -2.6270 -3.0076 41 1 3.0549 -3.7527 -1.7382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703735323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:03 Heat of formation + Delta-G solvation = -69.094150 kcal Electronic energy + Delta-G solvation = -17090.606870 eV Core-core repulsion = 14390.503897 eV Total energy + Delta-G solvation = -2700.102973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60489 -38.49651 -36.43759 -35.57963 -34.13810 -30.98137 -29.06946 -27.56855 -26.45443 -25.15128 -22.86461 -21.74442 -21.63016 -20.38269 -18.85886 -18.36804 -17.13507 -16.53611 -16.33121 -16.16309 -15.81831 -15.30743 -14.79039 -14.74887 -14.36645 -13.86115 -13.69982 -13.44868 -13.31612 -13.05094 -12.87903 -12.63695 -12.34755 -12.30939 -12.18383 -11.87752 -11.75159 -11.66909 -11.38383 -11.24667 -11.21825 -11.08035 -10.76362 -10.55201 -9.28605 -8.29690 -6.33932 1.36074 1.37985 1.50610 2.36724 2.89916 3.05583 3.40011 3.63421 3.67577 3.90255 4.02845 4.05067 4.16891 4.32364 4.43734 4.51052 4.54764 4.58427 4.66948 4.75510 4.79625 4.82919 4.86741 4.89687 4.92661 5.03614 5.13219 5.15369 5.18743 5.24726 5.28133 5.51432 5.57948 5.64833 5.68587 6.11260 6.18123 6.29489 6.74325 6.92489 7.30936 8.87373 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.065669 B = 0.003204 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.276742 B = 8736.110168 C = 8940.164799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.547 5.547 3 C 0.061 3.939 4 C -0.103 4.103 5 C -0.095 4.095 6 C -0.012 4.012 7 C -0.535 4.535 8 H 0.029 0.971 9 C 0.000 4.000 10 N -0.954 5.954 11 Si 0.955 3.045 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.246 1.246 15 C 0.066 3.934 16 C -0.098 4.098 17 H 0.103 0.897 18 C -0.162 4.162 19 C 0.077 3.923 20 H 0.099 0.901 21 O -0.582 6.582 22 C -0.127 4.127 23 H 0.019 0.981 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.266 0.734 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.394 0.606 40 H 0.077 0.923 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -26.355 -10.082 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.270 5.270 3 C -0.067 4.067 4 C -0.141 4.141 5 C -0.133 4.133 6 C -0.049 4.049 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.196 4.196 10 N -0.595 5.595 11 Si 0.778 3.222 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.170 1.170 15 C -0.062 4.062 16 C -0.117 4.117 17 H 0.121 0.879 18 C -0.199 4.199 19 C 0.018 3.982 20 H 0.117 0.883 21 O -0.390 6.390 22 C -0.165 4.165 23 H 0.038 0.962 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.244 0.756 40 H 0.096 0.904 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.557 -26.144 -9.751 28.451 hybrid contribution -0.849 0.852 -0.006 1.203 sum -6.407 -25.292 -9.757 27.855 Atomic orbital electron populations 1.22605 0.87161 1.02995 1.00376 1.62024 1.08522 1.13314 1.43183 1.22078 1.00099 0.87925 0.96585 1.21512 1.00723 0.94302 0.97584 1.21299 0.99807 0.94843 0.97393 1.19534 0.96175 0.93643 0.95542 1.21573 1.34819 0.98347 1.02580 0.95262 1.26091 0.96576 0.94809 1.02155 1.70079 1.48243 1.08811 1.32335 0.85589 0.79624 0.78468 0.78543 1.19035 1.20908 1.16951 1.22107 1.00101 0.93178 0.90817 1.22269 0.96540 0.93491 0.99358 0.87914 1.23815 0.97099 0.98441 1.00587 1.23452 0.95172 0.94915 0.84648 0.88299 1.86486 1.43892 1.79296 1.29359 1.23091 0.96808 0.97713 0.98873 0.96192 0.89412 0.91745 0.95377 0.90735 0.91629 0.92171 0.93761 0.93379 0.96362 0.96367 0.92496 0.95274 0.90655 0.90171 0.90634 0.75646 0.90392 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.85 127.69 1.13 1.47 16 2 N -0.55 -12.65 4.76 -922.44 -4.39 -17.05 16 3 C 0.06 1.63 4.96 86.30 0.43 2.06 16 4 C -0.10 -3.25 5.14 30.60 0.16 -3.09 16 5 C -0.10 -3.80 5.15 30.59 0.16 -3.64 16 6 C -0.01 -0.56 4.04 29.85 0.12 -0.43 16 7 C -0.54 -31.97 9.66 25.60 0.25 -31.72 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 9 C 0.00 0.00 5.47 84.65 0.46 0.46 16 10 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 11 Si 0.95 45.25 27.47 68.60 1.88 47.13 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.25 -10.81 6.53 99.48 0.65 -10.16 16 15 C 0.07 1.28 4.87 86.31 0.42 1.70 16 16 C -0.10 -1.51 3.50 -10.27 -0.04 -1.54 16 17 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 18 C -0.16 -2.22 5.67 31.18 0.18 -2.04 16 19 C 0.08 0.98 5.21 31.18 0.16 1.15 16 20 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 21 O -0.58 -8.51 13.68 -148.98 -2.04 -10.55 16 22 C -0.13 -1.84 7.47 31.12 0.23 -1.61 16 23 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.09 1.50 4.98 -2.39 -0.01 1.49 16 25 H 0.06 1.43 6.47 -2.39 -0.02 1.42 16 26 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 27 H 0.07 1.96 7.93 -2.39 -0.02 1.94 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.84 6.55 -2.39 -0.02 1.83 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.02 0.85 7.58 -2.39 -0.02 0.83 16 33 H 0.02 0.86 7.18 -2.39 -0.02 0.84 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.03 0.59 7.85 -2.39 -0.02 0.58 16 36 H 0.07 1.46 7.93 -2.39 -0.02 1.44 16 37 H 0.08 0.94 7.21 -2.39 -0.02 0.93 16 38 H 0.08 1.23 7.92 -2.39 -0.02 1.21 16 39 H 0.39 2.30 9.12 -74.06 -0.68 1.63 16 40 H 0.08 1.31 8.10 -2.38 -0.02 1.29 16 41 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -69.44 320.85 -0.34 -69.78 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.25 Total: 8.93 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 3.66 Total: -37.24 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -4.09 Total: -78.05 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -2.04 Total: -10.55 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -69.44 -0.34 -69.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703735323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.688 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds