Wall clock time and date at job start Mon Mar 30 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47023 * 2 1 4 4 C 1.46900 * 111.00140 * 163.35122 * 3 2 1 5 5 C 1.50693 * 109.47156 * 287.21311 * 4 3 2 6 6 H 1.07998 * 119.99938 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99820 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00174 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46993 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47421 * 119.99710 * 9 7 5 12 12 H 1.48499 * 109.47111 * 239.99992 * 9 7 5 13 13 C 1.46907 * 110.99845 * 287.30360 * 3 2 1 14 14 H 1.09006 * 109.46551 * 36.59013 * 13 3 2 15 15 C 1.52998 * 109.47128 * 156.58516 * 13 3 2 16 16 C 1.52993 * 109.47029 * 180.02562 * 15 13 3 17 17 C 1.53004 * 109.47189 * 300.00405 * 16 15 13 18 18 C 1.52993 * 109.47142 * 59.99823 * 17 16 15 19 19 C 1.52993 * 109.47223 * 300.00156 * 18 17 16 20 20 C 1.53011 * 109.47219 * 180.02562 * 19 18 17 21 21 O 1.42896 * 109.47198 * 299.99967 * 19 18 17 22 22 H 1.09003 * 109.46968 * 57.09622 * 1 2 3 23 23 H 1.09001 * 109.47016 * 177.09395 * 1 2 3 24 24 H 1.08998 * 109.47309 * 297.09208 * 1 2 3 25 25 H 1.08999 * 109.46679 * 119.99185 * 2 1 3 26 26 H 1.08994 * 109.47894 * 239.99507 * 2 1 3 27 27 H 1.09003 * 109.46799 * 47.21718 * 4 3 2 28 28 H 1.09003 * 109.46919 * 167.20888 * 4 3 2 29 29 H 0.96998 * 120.00205 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.47335 * 300.00455 * 15 13 3 31 31 H 1.09000 * 109.46421 * 60.00389 * 15 13 3 32 32 H 1.09001 * 109.47457 * 180.02562 * 16 15 13 33 33 H 1.08998 * 109.47575 * 60.00263 * 16 15 13 34 34 H 1.09004 * 109.46770 * 299.99645 * 17 16 15 35 35 H 1.09005 * 109.47262 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47011 * 179.97438 * 18 17 16 37 37 H 1.09007 * 109.47055 * 60.00562 * 18 17 16 38 38 H 1.08999 * 109.46521 * 285.80118 * 20 19 18 39 39 H 1.09002 * 109.46950 * 45.79851 * 20 19 18 40 40 H 1.08997 * 109.47002 * 165.79962 * 20 19 18 41 41 H 0.96703 * 114.00205 * 304.93023 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4339 1.4434 0.3929 5 6 3.5562 1.1748 1.8707 6 1 2.6717 0.9806 2.4592 7 6 4.7971 1.1781 2.4715 8 7 5.8741 1.4151 1.7549 9 14 4.9489 0.8444 4.3032 10 1 3.5996 0.6084 4.8768 11 1 5.7960 -0.3559 4.5193 12 1 5.5716 2.0162 4.9699 13 6 1.8105 2.0173 -1.3094 14 1 0.8676 1.6716 -1.7333 15 6 1.7668 3.5373 -1.1407 16 6 1.5484 4.1958 -2.5043 17 6 2.6971 3.8195 -3.4422 18 6 2.7407 2.2995 -3.6109 19 6 2.9592 1.6411 -2.2473 20 6 3.0034 0.1209 -2.4162 21 8 4.1954 2.0943 -1.6921 22 1 -0.3633 0.5583 -0.8628 23 1 -0.3633 -1.0264 -0.0521 24 1 -0.3634 0.4680 0.9149 25 1 1.8932 -0.5137 0.8901 26 1 1.8934 -0.5139 -0.8898 27 1 3.9961 0.6916 -0.1609 28 1 3.8325 2.4330 0.1692 29 1 6.7472 1.4170 2.1775 30 1 0.9482 3.8054 -0.4728 31 1 2.7097 3.8829 -0.7167 32 1 1.5177 5.2787 -2.3842 33 1 0.6054 3.8501 -2.9279 34 1 3.6401 4.1653 -3.0187 35 1 2.5417 4.2890 -4.4136 36 1 3.5589 2.0315 -4.2795 37 1 1.7977 1.9538 -4.0346 38 1 1.9959 -0.2540 -2.5960 39 1 3.6418 -0.1322 -3.2627 40 1 3.4041 -0.3337 -1.5102 41 1 4.9594 1.9570 -2.2687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704121956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:08 Heat of formation + Delta-G solvation = -65.391999 kcal Electronic energy + Delta-G solvation = -19538.228140 eV Core-core repulsion = 16838.285704 eV Total energy + Delta-G solvation = -2699.942436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30701 -37.17093 -35.95211 -34.63482 -32.32100 -31.64700 -30.44910 -28.20982 -27.03602 -24.11118 -23.43499 -22.33255 -21.50667 -20.25125 -18.59150 -17.15094 -16.77866 -16.20492 -15.95396 -15.76052 -15.42101 -15.26428 -14.52737 -14.47460 -14.05518 -13.63174 -13.38509 -13.24744 -12.93774 -12.87985 -12.72451 -12.58440 -12.32290 -12.27393 -12.15676 -12.05890 -11.83475 -11.43004 -11.39529 -11.16922 -11.05944 -10.91874 -10.40691 -10.28814 -8.55667 -8.03167 -6.12743 1.37848 1.39005 1.51573 2.45052 3.23590 3.35218 3.63673 3.85723 3.94549 4.03304 4.27445 4.30738 4.37884 4.49255 4.53989 4.60582 4.72101 4.73662 4.79207 4.86018 4.95810 4.98654 5.05737 5.13068 5.18024 5.28191 5.32740 5.36097 5.39809 5.48045 5.51151 5.65626 5.67975 5.78696 5.93482 6.32846 6.67538 6.96995 7.05702 7.15486 7.54155 9.02639 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.008468 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.557254 B = 3305.611603 C = 3653.572497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.029 3.971 3 N -0.545 5.545 4 C 0.231 3.769 5 C -0.527 4.527 6 H 0.044 0.956 7 C 0.003 3.997 8 N -0.924 5.924 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.098 3.902 14 H 0.093 0.907 15 C -0.102 4.102 16 C -0.109 4.109 17 C -0.112 4.112 18 C -0.132 4.132 19 C 0.097 3.903 20 C -0.177 4.177 21 O -0.545 6.545 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.054 0.946 27 H -0.013 1.013 28 H 0.025 0.975 29 H 0.257 0.743 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 0.599 -12.757 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 N -0.268 5.268 4 C 0.105 3.895 5 C -0.566 4.566 6 H 0.063 0.937 7 C -0.195 4.195 8 N -0.565 5.565 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.207 1.207 13 C -0.011 4.011 14 H 0.111 0.889 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.170 4.170 19 C 0.055 3.945 20 C -0.234 4.234 21 O -0.351 6.351 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.004 0.996 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.205 1.024 -11.869 15.055 hybrid contribution 1.487 -0.787 0.352 1.719 sum -7.718 0.238 -11.517 13.866 Atomic orbital electron populations 1.21723 0.94147 1.01573 1.01626 1.22468 0.96338 0.90393 1.00713 1.62198 1.21767 1.16735 1.26114 1.19424 0.82358 0.95992 0.91679 1.21838 0.92005 1.46442 0.96322 0.93726 1.25737 0.95684 0.95939 1.02114 1.70129 0.98163 1.51348 1.36825 0.85588 0.77948 0.77689 0.80871 1.19486 1.20479 1.20691 1.21844 0.95842 0.95279 0.88178 0.88920 1.21412 1.00452 0.94489 0.97664 1.21490 0.99032 1.00085 0.94046 1.21438 0.98555 0.95376 0.99624 1.22159 1.03184 0.96139 0.95517 1.21980 0.86269 0.92389 0.93899 1.22748 1.02503 0.96763 1.01410 1.87346 1.16750 1.85426 1.45574 0.92037 0.91223 0.93735 0.94002 0.92779 0.99562 0.95757 0.93389 0.92818 0.94748 0.91507 0.90558 0.93435 0.90120 0.90986 0.89860 0.90563 0.91538 0.93748 0.79586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 10.02 71.98 0.72 -3.33 16 2 C 0.03 1.12 5.05 86.30 0.44 1.55 16 3 N -0.54 -23.96 4.25 -875.53 -3.72 -27.68 16 4 C 0.23 12.48 2.83 85.55 0.24 12.72 16 5 C -0.53 -31.61 8.40 25.60 0.21 -31.40 16 6 H 0.04 2.70 7.70 -2.91 -0.02 2.68 16 7 C 0.00 0.17 5.46 84.65 0.46 0.63 16 8 N -0.92 -57.37 13.29 21.45 0.28 -57.08 16 9 Si 0.95 46.77 29.54 68.60 2.03 48.79 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 C 0.10 3.43 1.66 44.91 0.07 3.50 16 14 H 0.09 2.82 6.23 -2.38 -0.01 2.81 16 15 C -0.10 -3.56 5.22 30.59 0.16 -3.40 16 16 C -0.11 -2.75 5.92 30.59 0.18 -2.56 16 17 C -0.11 -2.69 5.78 30.59 0.18 -2.52 16 18 C -0.13 -3.13 4.83 30.59 0.15 -2.98 16 19 C 0.10 3.10 0.56 -10.79 -0.01 3.10 16 20 C -0.18 -5.45 7.06 71.99 0.51 -4.94 16 21 O -0.54 -21.84 7.14 -148.98 -1.06 -22.90 16 22 H 0.06 1.64 6.52 -2.39 -0.02 1.63 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.90 7.12 -2.39 -0.02 1.88 16 26 H 0.05 1.96 3.58 -2.39 -0.01 1.95 16 27 H -0.01 -0.76 4.98 -2.39 -0.01 -0.77 16 28 H 0.02 1.48 5.14 -2.39 -0.01 1.47 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.47 6.59 -2.39 -0.02 1.46 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.35 7.68 -2.38 -0.02 1.33 16 35 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 2.03 7.13 -2.39 -0.02 2.02 16 39 H 0.07 1.74 8.06 -2.39 -0.02 1.72 16 40 H 0.04 1.72 4.78 -2.39 -0.01 1.71 16 41 H 0.36 12.13 9.03 -74.06 -0.67 11.46 16 Total: -1.00 -68.73 296.30 1.18 -67.54 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.34 Total: 20.94 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.32 Total: -29.61 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.44 Total: -84.76 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.06 Total: -22.90 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -68.73 1.18 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704121956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.150 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds