Wall clock time and date at job start Mon Mar 30 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46903 * 109.47009 * 2 1 4 4 C 1.46904 * 111.00081 * 61.13601 * 3 2 1 5 5 C 1.50698 * 109.46839 * 70.87778 * 4 3 2 6 6 H 1.07999 * 120.00447 * 4.09509 * 5 4 3 7 7 C 1.37884 * 120.00081 * 184.10325 * 5 4 3 8 8 N 1.31509 * 119.99448 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00124 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47259 * 89.99592 * 9 7 5 11 11 H 1.48494 * 109.46990 * 209.99606 * 9 7 5 12 12 H 1.48497 * 109.47246 * 329.99597 * 9 7 5 13 13 C 1.46902 * 110.99922 * 297.18441 * 3 2 1 14 14 H 1.08999 * 109.46954 * 44.00770 * 13 3 2 15 15 C 1.52997 * 109.47038 * 164.00694 * 13 3 2 16 16 C 1.53006 * 109.46999 * 179.97438 * 15 13 3 17 17 C 1.52994 * 109.47404 * 300.00005 * 16 15 13 18 18 C 1.53012 * 109.47052 * 59.99630 * 17 16 15 19 19 C 1.52994 * 109.47085 * 300.00268 * 18 17 16 20 20 C 1.52997 * 109.47594 * 300.00046 * 19 18 17 21 21 O 1.42897 * 109.47078 * 179.97438 * 19 18 17 22 22 H 1.09002 * 109.47035 * 59.83200 * 1 2 3 23 23 H 1.08998 * 109.46637 * 179.83448 * 1 2 3 24 24 H 1.08993 * 109.46909 * 299.83251 * 1 2 3 25 25 H 1.09001 * 109.47134 * 119.99716 * 2 1 3 26 26 H 1.08996 * 109.47367 * 240.00245 * 2 1 3 27 27 H 1.08999 * 109.47085 * 190.87515 * 4 3 2 28 28 H 1.08993 * 109.47162 * 310.87327 * 4 3 2 29 29 H 0.97003 * 119.99713 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47221 * 299.99500 * 15 13 3 31 31 H 1.08999 * 109.47186 * 60.00217 * 15 13 3 32 32 H 1.08999 * 109.46972 * 60.00089 * 16 15 13 33 33 H 1.09005 * 109.47342 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47432 * 179.97438 * 17 16 15 35 35 H 1.09004 * 109.46812 * 300.00352 * 17 16 15 36 36 H 1.08999 * 109.46862 * 60.00199 * 18 17 16 37 37 H 1.09000 * 109.47031 * 180.02562 * 18 17 16 38 38 H 1.08995 * 109.47555 * 179.97438 * 20 19 18 39 39 H 1.09009 * 109.46826 * 300.00183 * 20 19 18 40 40 H 1.09001 * 109.47245 * 59.99599 * 20 19 18 41 41 H 0.96702 * 113.99932 * 60.00249 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5710 2.1021 1.2011 5 6 2.3053 1.5725 2.4058 6 1 3.0793 0.8294 2.2830 7 6 1.9888 2.0366 3.6651 8 7 1.0465 2.9417 3.8146 9 14 2.8984 1.3797 5.1585 10 1 4.0938 2.2212 5.4197 11 1 2.0002 1.4153 6.3404 12 1 3.3246 -0.0196 4.9026 13 6 1.6045 2.0902 -1.2200 14 1 0.5589 1.8660 -1.4311 15 6 1.7725 3.5977 -1.0199 16 6 1.3406 4.3321 -2.2908 17 6 2.2081 3.8736 -3.4646 18 6 2.0401 2.3660 -3.6646 19 6 2.4721 1.6317 -2.3938 20 6 3.9396 1.9463 -2.0967 21 8 2.3146 0.2237 -2.5805 22 1 -0.3633 0.5165 -0.8885 23 1 -0.3632 -1.0277 -0.0030 24 1 -0.3633 0.5112 0.8914 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.7786 3.1661 1.0878 28 1 0.4995 1.9531 1.3341 29 1 0.8241 3.2684 4.7004 30 1 1.1547 3.9243 -0.1833 31 1 2.8181 3.8219 -0.8087 32 1 0.2951 4.1080 -2.5024 33 1 1.4599 5.4062 -2.1481 34 1 1.9001 4.3965 -4.3700 35 1 3.2537 4.0977 -3.2529 36 1 0.9946 2.1419 -3.8762 37 1 2.6585 2.0393 -4.5007 38 1 4.2471 1.4235 -1.1911 39 1 4.5577 1.6196 -2.9331 40 1 4.0593 3.0203 -1.9543 41 1 2.8368 -0.1372 -3.3100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704121958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:13 Heat of formation + Delta-G solvation = -52.085486 kcal Electronic energy + Delta-G solvation = -19285.217498 eV Core-core repulsion = 16585.852076 eV Total energy + Delta-G solvation = -2699.365422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.79437 -36.13275 -35.23512 -32.45932 -30.41785 -30.20122 -28.37013 -26.78147 -25.54852 -23.27289 -22.14212 -21.29799 -19.63282 -18.01713 -16.76273 -16.05204 -15.18362 -15.08697 -14.77961 -14.28207 -13.76491 -13.61283 -13.25867 -12.84275 -12.69743 -12.24326 -12.04677 -11.78929 -11.55403 -11.29679 -11.25903 -11.06909 -10.97518 -10.77226 -10.59248 -10.38838 -10.32085 -10.12686 -9.86237 -9.84003 -9.48292 -9.05413 -8.95878 -8.29793 -6.95228 -5.93895 -3.93054 3.36357 3.42229 3.46609 4.47156 4.49122 4.83183 4.94147 5.19932 5.27724 5.41177 5.45449 5.52853 5.59219 5.71775 5.78267 5.88201 5.99150 6.07652 6.13314 6.19324 6.23172 6.28285 6.31846 6.36997 6.43814 6.45557 6.71502 6.78066 6.83054 6.90113 6.97688 7.25850 7.47203 7.60776 7.93238 8.03985 8.26140 8.42387 8.72796 9.15670 9.70027 11.16553 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.007440 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.718028 B = 3762.658647 C = 4049.952834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.054 3.946 3 N -0.523 5.523 4 C 0.176 3.824 5 C -0.497 4.497 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.098 3.902 14 H 0.040 0.960 15 C -0.122 4.122 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.142 4.142 19 C 0.142 3.858 20 C -0.167 4.167 21 O -0.548 6.548 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.036 0.964 28 H 0.000 1.000 29 H 0.259 0.741 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -0.306 -14.449 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.074 4.074 3 N -0.246 5.246 4 C 0.051 3.949 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 C -0.012 4.012 14 H 0.058 0.942 15 C -0.159 4.159 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.181 4.181 19 C 0.101 3.899 20 C -0.225 4.225 21 O -0.353 6.353 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.881 -0.142 -13.769 13.897 hybrid contribution -0.171 -0.279 0.430 0.540 sum 1.711 -0.420 -13.339 13.455 Atomic orbital electron populations 1.22350 1.00239 1.00418 1.01322 1.22214 0.91540 0.91353 1.02244 1.62301 1.58933 1.01898 1.01459 1.20019 0.94545 0.94388 0.85969 1.21192 1.18994 1.22911 0.90512 0.92138 1.24965 0.95414 0.95452 0.98918 1.69956 1.31076 1.30305 1.22842 0.86561 0.79487 0.79343 0.82382 1.20807 1.21479 1.19961 1.21447 0.95873 0.93106 0.90725 0.94234 1.21889 1.03078 0.93730 0.97231 1.21597 0.99384 0.99699 0.95177 1.21549 1.00661 0.95084 0.98152 1.22233 1.01716 0.96179 0.97926 1.21229 0.95265 0.80070 0.93323 1.22399 0.95262 1.02614 1.02199 1.86682 1.71088 1.22351 1.55217 0.93867 0.93906 0.91999 0.91393 0.89576 0.94597 0.98241 0.93160 0.90052 0.90832 0.92389 0.92009 0.92491 0.91552 0.91793 0.92311 0.90010 0.94260 0.91769 0.79534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 9.31 37.16 0.35 -3.32 16 2 C 0.05 1.14 5.68 -3.82 -0.02 1.11 16 3 N -0.52 -11.32 3.75 -228.08 -0.86 -12.18 16 4 C 0.18 4.53 4.03 -4.97 -0.02 4.51 16 5 C -0.50 -14.09 8.50 -34.44 -0.29 -14.38 16 6 H 0.06 1.73 7.58 -52.49 -0.40 1.33 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.10 1.79 1.50 -67.71 -0.10 1.69 16 14 H 0.04 0.77 5.76 -51.93 -0.30 0.48 16 15 C -0.12 -2.12 3.96 -26.73 -0.11 -2.22 16 16 C -0.12 -1.65 5.92 -26.73 -0.16 -1.80 16 17 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16 18 C -0.14 -1.77 5.07 -26.73 -0.14 -1.90 16 19 C 0.14 2.13 0.91 -90.62 -0.08 2.04 16 20 C -0.17 -2.47 7.96 37.16 0.30 -2.17 16 21 O -0.55 -8.13 9.79 -35.23 -0.34 -8.47 16 22 H 0.04 0.82 6.16 -51.93 -0.32 0.50 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.39 6.22 -51.93 -0.32 1.07 16 25 H 0.07 1.54 7.26 -51.93 -0.38 1.17 16 26 H 0.09 1.68 5.07 -51.93 -0.26 1.42 16 27 H 0.04 0.97 5.26 -51.93 -0.27 0.69 16 28 H 0.00 0.00 5.84 -51.93 -0.30 -0.31 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.08 1.61 6.10 -51.93 -0.32 1.30 16 31 H 0.07 1.32 6.43 -51.93 -0.33 0.98 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.78 6.43 -51.93 -0.33 0.44 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.44 7.60 -51.93 -0.39 1.04 16 39 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.06 0.94 4.81 -51.93 -0.25 0.69 16 41 H 0.36 3.79 9.05 45.56 0.41 4.21 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -30.05 296.51 -7.41 -37.46 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.87 Total: 4.46 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.52 Total: -16.57 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.12 Total: -38.36 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.34 Total: -8.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.05 -7.41 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704121958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.629 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds