Wall clock time and date at job start Mon Mar 30 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46903 * 109.47009 * 2 1 4 4 C 1.46904 * 111.00081 * 61.13601 * 3 2 1 5 5 C 1.50698 * 109.46839 * 70.87778 * 4 3 2 6 6 H 1.07999 * 120.00447 * 4.09509 * 5 4 3 7 7 C 1.37884 * 120.00081 * 184.10325 * 5 4 3 8 8 N 1.31509 * 119.99448 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00124 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47259 * 89.99592 * 9 7 5 11 11 H 1.48494 * 109.46990 * 209.99606 * 9 7 5 12 12 H 1.48497 * 109.47246 * 329.99597 * 9 7 5 13 13 C 1.46902 * 110.99922 * 297.18441 * 3 2 1 14 14 H 1.08999 * 109.46954 * 44.00770 * 13 3 2 15 15 C 1.52997 * 109.47038 * 164.00694 * 13 3 2 16 16 C 1.53006 * 109.46999 * 179.97438 * 15 13 3 17 17 C 1.52994 * 109.47404 * 300.00005 * 16 15 13 18 18 C 1.53012 * 109.47052 * 59.99630 * 17 16 15 19 19 C 1.52994 * 109.47085 * 300.00268 * 18 17 16 20 20 C 1.52997 * 109.47594 * 300.00046 * 19 18 17 21 21 O 1.42897 * 109.47078 * 179.97438 * 19 18 17 22 22 H 1.09002 * 109.47035 * 59.83200 * 1 2 3 23 23 H 1.08998 * 109.46637 * 179.83448 * 1 2 3 24 24 H 1.08993 * 109.46909 * 299.83251 * 1 2 3 25 25 H 1.09001 * 109.47134 * 119.99716 * 2 1 3 26 26 H 1.08996 * 109.47367 * 240.00245 * 2 1 3 27 27 H 1.08999 * 109.47085 * 190.87515 * 4 3 2 28 28 H 1.08993 * 109.47162 * 310.87327 * 4 3 2 29 29 H 0.97003 * 119.99713 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47221 * 299.99500 * 15 13 3 31 31 H 1.08999 * 109.47186 * 60.00217 * 15 13 3 32 32 H 1.08999 * 109.46972 * 60.00089 * 16 15 13 33 33 H 1.09005 * 109.47342 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47432 * 179.97438 * 17 16 15 35 35 H 1.09004 * 109.46812 * 300.00352 * 17 16 15 36 36 H 1.08999 * 109.46862 * 60.00199 * 18 17 16 37 37 H 1.09000 * 109.47031 * 180.02562 * 18 17 16 38 38 H 1.08995 * 109.47555 * 179.97438 * 20 19 18 39 39 H 1.09009 * 109.46826 * 300.00183 * 20 19 18 40 40 H 1.09001 * 109.47245 * 59.99599 * 20 19 18 41 41 H 0.96702 * 113.99932 * 60.00249 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5710 2.1021 1.2011 5 6 2.3053 1.5725 2.4058 6 1 3.0793 0.8294 2.2830 7 6 1.9888 2.0366 3.6651 8 7 1.0465 2.9417 3.8146 9 14 2.8984 1.3797 5.1585 10 1 4.0938 2.2212 5.4197 11 1 2.0002 1.4153 6.3404 12 1 3.3246 -0.0196 4.9026 13 6 1.6045 2.0902 -1.2200 14 1 0.5589 1.8660 -1.4311 15 6 1.7725 3.5977 -1.0199 16 6 1.3406 4.3321 -2.2908 17 6 2.2081 3.8736 -3.4646 18 6 2.0401 2.3660 -3.6646 19 6 2.4721 1.6317 -2.3938 20 6 3.9396 1.9463 -2.0967 21 8 2.3146 0.2237 -2.5805 22 1 -0.3633 0.5165 -0.8885 23 1 -0.3632 -1.0277 -0.0030 24 1 -0.3633 0.5112 0.8914 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.7786 3.1661 1.0878 28 1 0.4995 1.9531 1.3341 29 1 0.8241 3.2684 4.7004 30 1 1.1547 3.9243 -0.1833 31 1 2.8181 3.8219 -0.8087 32 1 0.2951 4.1080 -2.5024 33 1 1.4599 5.4062 -2.1481 34 1 1.9001 4.3965 -4.3700 35 1 3.2537 4.0977 -3.2529 36 1 0.9946 2.1419 -3.8762 37 1 2.6585 2.0393 -4.5007 38 1 4.2471 1.4235 -1.1911 39 1 4.5577 1.6196 -2.9331 40 1 4.0593 3.0203 -1.9543 41 1 2.8368 -0.1372 -3.3100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704121958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:11 Heat of formation + Delta-G solvation = -72.900289 kcal Electronic energy + Delta-G solvation = -19286.120096 eV Core-core repulsion = 16585.852076 eV Total energy + Delta-G solvation = -2700.268019 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12487 -37.72401 -36.41273 -34.63305 -31.83721 -31.39725 -30.16551 -28.32811 -27.05835 -25.17380 -23.52440 -22.63086 -21.15105 -19.40059 -18.45042 -17.76120 -16.74458 -16.60835 -16.40208 -15.80644 -15.27027 -14.93472 -14.57100 -14.47936 -14.11248 -13.89764 -13.57589 -13.15143 -13.02360 -12.90805 -12.73076 -12.68947 -12.52868 -12.27633 -12.20433 -12.05993 -11.90490 -11.54764 -11.40527 -11.26816 -11.09143 -10.83276 -10.47789 -10.33289 -8.75786 -8.15044 -6.23215 1.39051 1.40244 1.51399 2.41604 3.16102 3.31075 3.40562 3.80977 4.03102 4.06505 4.29608 4.30131 4.38703 4.42930 4.44198 4.55213 4.56542 4.74266 4.80630 4.94705 4.97385 5.00019 5.04778 5.10938 5.16919 5.23084 5.28309 5.31029 5.41474 5.43130 5.46301 5.47323 5.65033 5.72820 5.78409 6.18079 6.52829 6.80935 6.95073 7.11952 7.45189 8.94580 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.007440 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.718028 B = 3762.658647 C = 4049.952834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.056 3.944 3 N -0.526 5.526 4 C 0.193 3.807 5 C -0.514 4.514 6 H 0.053 0.947 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.093 3.907 14 H 0.026 0.974 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.135 4.135 19 C 0.147 3.853 20 C -0.162 4.162 21 O -0.565 6.565 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.026 0.974 25 H 0.042 0.958 26 H 0.108 0.892 27 H 0.020 0.980 28 H -0.032 1.032 29 H 0.262 0.738 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -0.749 -16.529 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.071 4.071 3 N -0.249 5.249 4 C 0.067 3.933 5 C -0.553 4.553 6 H 0.072 0.928 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.193 1.193 13 C -0.016 4.016 14 H 0.044 0.956 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.173 4.173 19 C 0.107 3.893 20 C -0.220 4.220 21 O -0.374 6.374 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.038 0.962 28 H -0.014 1.014 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.983 -0.596 -15.881 16.170 hybrid contribution -0.528 -0.157 1.037 1.174 sum 2.455 -0.753 -14.844 15.065 Atomic orbital electron populations 1.22219 0.99537 1.01496 0.99923 1.22223 0.92092 0.90838 1.01996 1.62258 1.58961 1.02231 1.01405 1.19657 0.92334 0.93850 0.87486 1.21481 1.19063 1.22855 0.91895 0.92826 1.25830 0.96198 0.95598 1.02019 1.70083 1.32409 1.31408 1.23662 0.85483 0.78361 0.78928 0.78446 1.19836 1.20853 1.19290 1.21619 0.96028 0.93414 0.90515 0.95594 1.21782 1.01735 0.93820 0.98207 1.21569 0.99854 0.99916 0.94007 1.21553 1.00444 0.94993 0.98048 1.22173 1.02114 0.95994 0.96997 1.21073 0.94464 0.80719 0.93060 1.22332 0.95559 1.02194 1.01884 1.86552 1.71854 1.22190 1.56756 0.93043 0.91522 0.95487 0.93942 0.87398 0.96244 1.01390 0.92961 0.93889 0.91720 0.92348 0.90819 0.89733 0.91045 0.92063 0.89201 0.93435 0.90987 0.91859 0.76868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.01 9.31 71.98 0.67 -6.34 16 2 C 0.06 2.39 5.68 86.30 0.49 2.88 16 3 N -0.53 -23.55 3.75 -875.50 -3.29 -26.84 16 4 C 0.19 10.52 4.03 85.56 0.34 10.87 16 5 C -0.51 -30.28 8.50 25.60 0.22 -30.06 16 6 H 0.05 3.16 7.58 -2.91 -0.02 3.14 16 7 C 0.00 0.05 5.46 84.66 0.46 0.51 16 8 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 9 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 C 0.09 3.43 1.50 44.92 0.07 3.50 16 14 H 0.03 1.03 5.76 -2.39 -0.01 1.02 16 15 C -0.12 -4.20 3.96 30.60 0.12 -4.08 16 16 C -0.12 -3.00 5.92 30.59 0.18 -2.82 16 17 C -0.11 -2.29 5.65 30.60 0.17 -2.12 16 18 C -0.13 -2.84 5.07 30.60 0.16 -2.68 16 19 C 0.15 4.12 0.91 -10.80 -0.01 4.11 16 20 C -0.16 -4.47 7.96 71.98 0.57 -3.90 16 21 O -0.56 -15.28 9.79 -148.98 -1.46 -16.74 16 22 H 0.05 1.97 6.16 -2.39 -0.01 1.96 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.03 1.26 6.22 -2.39 -0.01 1.24 16 25 H 0.04 1.99 7.26 -2.39 -0.02 1.97 16 26 H 0.11 4.13 5.07 -2.39 -0.01 4.12 16 27 H 0.02 1.13 5.26 -2.39 -0.01 1.11 16 28 H -0.03 -1.89 5.84 -2.39 -0.01 -1.90 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 30 H 0.04 1.83 6.10 -2.38 -0.01 1.81 16 31 H 0.06 2.38 6.43 -2.39 -0.02 2.36 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.41 6.43 -2.39 -0.02 1.40 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.64 7.60 -2.39 -0.02 1.62 16 39 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.06 1.74 4.81 -2.39 -0.01 1.73 16 41 H 0.38 6.62 9.05 -74.06 -0.67 5.95 16 Total: -1.00 -67.46 296.51 1.36 -66.10 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.35 Total: 16.95 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.45 Total: -30.13 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -3.00 Total: -84.16 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.46 Total: -16.74 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -67.46 1.36 -66.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704121958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.797 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds