Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99981 * 2 1 4 4 C 1.53003 * 109.47036 * 66.04366 * 3 2 1 5 5 C 1.52999 * 109.47014 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47172 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.47260 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99891 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99886 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00299 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99715 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47047 * 60.00009 * 11 9 7 13 13 H 1.48506 * 109.47213 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47432 * 300.00480 * 11 9 7 15 15 C 1.46894 * 111.00190 * 236.04469 * 2 1 3 16 16 H 1.08993 * 110.43650 * 69.59153 * 15 2 1 17 17 C 1.54898 * 110.48905 * 306.90511 * 15 2 1 18 18 C 1.54888 * 102.74945 * 203.38204 * 17 15 2 19 19 C 1.54264 * 104.19635 * 37.94225 * 18 17 15 20 20 C 1.53869 * 106.59993 * 336.38958 * 19 18 17 21 21 H 1.09007 * 110.03429 * 240.71813 * 20 19 18 22 22 O 1.42902 * 110.07648 * 119.30738 * 20 19 18 23 23 H 1.09001 * 109.46956 * 180.77190 * 1 2 3 24 24 H 1.08998 * 109.47284 * 300.77509 * 1 2 3 25 25 H 1.09005 * 109.47074 * 60.77996 * 1 2 3 26 26 H 1.08997 * 109.47088 * 186.04297 * 3 2 1 27 27 H 1.09006 * 109.46676 * 306.04388 * 3 2 1 28 28 H 1.09004 * 109.47082 * 299.99541 * 4 3 2 29 29 H 1.08993 * 109.47219 * 60.00458 * 4 3 2 30 30 H 1.09006 * 109.47306 * 300.00189 * 5 4 3 31 31 H 1.09007 * 109.47420 * 59.99864 * 5 4 3 32 32 H 1.08997 * 109.47070 * 299.99714 * 6 5 4 33 33 H 1.08998 * 109.47517 * 59.99985 * 6 5 4 34 34 H 0.96998 * 119.99897 * 179.97438 * 10 9 7 35 35 H 1.08997 * 110.75482 * 321.69998 * 17 15 2 36 36 H 1.08999 * 110.75449 * 84.87764 * 17 15 2 37 37 H 1.09001 * 110.48118 * 156.61991 * 18 17 15 38 38 H 1.08996 * 110.48276 * 279.12685 * 18 17 15 39 39 H 1.08998 * 110.02997 * 217.10679 * 19 18 17 40 40 H 1.09001 * 110.03253 * 95.67727 * 19 18 17 41 41 H 0.96704 * 113.99856 * 62.10979 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1791 3.4860 1.3180 6 6 1.8146 4.1722 2.6359 7 6 2.3546 5.5792 2.6359 8 1 2.9034 5.9470 1.7815 9 6 2.1481 6.3969 3.7267 10 7 1.4803 5.9489 4.7673 11 14 2.8182 8.1406 3.7269 12 1 2.2280 8.8978 2.5940 13 1 2.4642 8.8067 5.0061 14 1 4.2955 8.1033 3.5811 15 6 1.9955 -0.7660 -1.1375 16 1 1.7994 -0.2417 -2.0727 17 6 1.3764 -2.1855 -1.1683 18 6 2.4249 -2.9985 -1.9675 19 6 3.7810 -2.4360 -1.4936 20 6 3.5080 -1.0167 -0.9659 21 1 4.0752 -0.2876 -1.5446 22 8 3.8650 -0.9296 0.4150 23 1 -0.3633 -1.0276 0.0138 24 1 -0.3634 0.5258 0.8829 25 1 -0.3633 0.5017 -0.8969 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9273 -0.8310 28 1 0.5471 2.0845 1.4264 29 1 2.0657 1.5016 2.1491 30 1 3.2635 3.4594 1.2095 31 1 1.7445 4.0417 0.4870 32 1 0.7303 4.1989 2.7438 33 1 2.2489 3.6168 3.4671 34 1 1.3354 6.5241 5.5348 35 1 1.2681 -2.5817 -0.1587 36 1 0.4157 -2.1768 -1.6833 37 1 2.3476 -4.0593 -1.7291 38 1 2.2964 -2.8386 -3.0380 39 1 4.4807 -2.3958 -2.3284 40 1 4.1857 -3.0594 -0.6963 41 1 4.8028 -1.0886 0.5896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708577102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = -91.618958 kcal Electronic energy + Delta-G solvation = -17701.285332 eV Core-core repulsion = 15000.205610 eV Total energy + Delta-G solvation = -2701.079722 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.38600 -37.68113 -36.16344 -35.38841 -33.94920 -30.54751 -28.94557 -28.56132 -27.02748 -25.10523 -22.66279 -21.67113 -21.36518 -20.61854 -18.42352 -18.24855 -16.97859 -16.54555 -16.54137 -15.88273 -15.67188 -15.36597 -14.64823 -14.50047 -14.22778 -13.82235 -13.65143 -13.42275 -13.22001 -12.89228 -12.65216 -12.61983 -12.42819 -12.17174 -12.10576 -11.93055 -11.87145 -11.57510 -11.33409 -11.30667 -11.19140 -10.93827 -10.69859 -10.54871 -9.13004 -8.19179 -6.31320 1.39270 1.43376 1.51338 2.41320 2.91371 3.13030 3.48118 3.66582 3.71338 4.07105 4.12566 4.19606 4.39818 4.41862 4.42328 4.52441 4.57993 4.60031 4.64837 4.76936 4.83945 4.89787 4.91649 5.01273 5.09605 5.10735 5.16023 5.21046 5.27080 5.29790 5.38314 5.44992 5.55450 5.77612 5.86517 6.20792 6.24560 6.28198 6.85712 7.08885 7.37865 8.92723 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048832 B = 0.003860 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.261873 B = 7252.432017 C = 7515.404559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.075 3.925 4 C -0.098 4.098 5 C -0.095 4.095 6 C 0.025 3.975 7 C -0.547 4.547 8 H 0.060 0.940 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.968 3.032 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.266 1.266 15 C 0.075 3.925 16 H 0.055 0.945 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.149 4.149 20 C 0.102 3.898 21 H 0.052 0.948 22 O -0.561 6.561 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.048 0.952 32 H -0.012 1.012 33 H -0.013 1.013 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -18.089 -15.799 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.254 5.254 3 C -0.052 4.052 4 C -0.136 4.136 5 C -0.133 4.133 6 C -0.012 4.012 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.792 3.208 12 H -0.190 1.190 13 H -0.207 1.207 14 H -0.191 1.191 15 C -0.034 4.034 16 H 0.072 0.928 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.187 4.187 20 C 0.042 3.958 21 H 0.070 0.930 22 O -0.366 6.366 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.342 -18.151 -15.146 23.756 hybrid contribution 0.417 1.318 -0.249 1.405 sum 2.760 -16.833 -15.396 22.978 Atomic orbital electron populations 1.22483 0.87513 1.02450 1.00386 1.61896 1.07482 1.13315 1.42726 1.21928 0.99983 0.87562 0.95770 1.21430 0.99872 0.94755 0.97572 1.21388 0.99594 0.94577 0.97710 1.18999 0.94626 0.94451 0.93170 1.21713 1.35169 0.99201 1.02357 0.92149 1.26050 0.95452 1.03526 0.95046 1.70108 1.42133 1.38429 1.06851 0.85457 0.79113 0.78612 0.77593 1.19045 1.20706 1.19052 1.22747 0.94040 0.95138 0.91445 0.92753 1.22555 0.98662 0.93009 1.00814 1.22257 0.93457 0.99798 0.99964 1.22869 0.98624 0.95563 1.01692 1.22495 0.94282 0.96104 0.82883 0.92957 1.86759 1.30937 1.94407 1.24517 0.90055 0.92337 0.95605 0.90935 0.95588 0.93228 0.93213 0.93214 0.93280 0.99348 0.99420 0.92741 0.91620 0.90712 0.90420 0.90405 0.89965 0.90646 0.77138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.03 127.69 1.15 1.65 16 2 N -0.53 -14.89 3.97 -890.71 -3.53 -18.42 16 3 C 0.08 2.37 4.62 86.30 0.40 2.77 16 4 C -0.10 -3.77 5.14 30.59 0.16 -3.61 16 5 C -0.09 -4.20 5.15 30.59 0.16 -4.05 16 6 C 0.02 1.39 4.97 29.85 0.15 1.54 16 7 C -0.55 -32.65 9.11 25.60 0.23 -32.42 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 10 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 11 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 C 0.07 1.65 2.53 46.00 0.12 1.77 16 16 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 17 C -0.11 -2.01 4.91 31.89 0.16 -1.86 16 18 C -0.12 -1.57 6.83 31.67 0.22 -1.35 16 19 C -0.15 -2.13 6.61 31.32 0.21 -1.93 16 20 C 0.10 2.04 3.29 31.32 0.10 2.14 16 21 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 22 O -0.56 -13.61 11.63 -148.98 -1.73 -15.35 16 23 H 0.08 1.75 6.63 -2.39 -0.02 1.74 16 24 H 0.06 1.65 6.44 -2.39 -0.02 1.64 16 25 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.07 2.29 6.70 -2.39 -0.02 2.27 16 27 H 0.03 0.79 8.12 -2.38 -0.02 0.77 16 28 H 0.05 1.91 6.54 -2.38 -0.02 1.90 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 32 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 36 H 0.07 1.16 7.90 -2.39 -0.02 1.14 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.09 7.96 -2.39 -0.02 1.07 16 41 H 0.38 6.17 9.11 -74.05 -0.67 5.50 16 Total: -1.00 -69.91 320.47 0.85 -69.06 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.30 Total: 11.09 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 3.51 Total: -35.07 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -3.25 Total: -77.24 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.73 Total: -15.35 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.91 0.85 -69.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708577102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.563 kcal (2) G-P(sol) polarization free energy of solvation -69.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds