Wall clock time and date at job start Mon Mar 30 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00295 * 2 1 4 4 C 1.53002 * 109.47178 * 287.92752 * 3 2 1 5 5 C 1.53003 * 109.47355 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47000 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46788 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00604 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99808 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00047 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99907 * 180.27503 * 9 7 6 12 12 H 1.48497 * 109.47177 * 179.72780 * 11 9 7 13 13 H 1.48501 * 109.47269 * 299.72890 * 11 9 7 14 14 H 1.48503 * 109.46756 * 59.72838 * 11 9 7 15 15 C 1.46899 * 111.00195 * 123.95732 * 2 1 3 16 16 H 1.09004 * 110.00930 * 284.43079 * 15 2 1 17 17 C 1.54261 * 110.03473 * 45.81910 * 15 2 1 18 18 C 1.54892 * 104.19723 * 142.89301 * 17 15 2 19 19 C 1.54885 * 102.74761 * 322.06538 * 18 17 15 20 20 C 1.53875 * 110.03411 * 163.04471 * 15 2 1 21 21 H 1.08998 * 110.03616 * 121.43077 * 20 15 2 22 22 O 1.42899 * 110.03280 * 359.97438 * 20 15 2 23 23 H 1.09003 * 109.47088 * 53.36635 * 1 2 3 24 24 H 1.09001 * 109.47077 * 173.36794 * 1 2 3 25 25 H 1.08999 * 109.46724 * 293.36564 * 1 2 3 26 26 H 1.08995 * 109.47662 * 167.92831 * 3 2 1 27 27 H 1.09001 * 109.46895 * 47.92349 * 3 2 1 28 28 H 1.09001 * 109.47428 * 59.99615 * 4 3 2 29 29 H 1.09004 * 109.47213 * 299.99996 * 4 3 2 30 30 H 1.08994 * 109.46840 * 59.99968 * 5 4 3 31 31 H 1.09001 * 109.47063 * 299.99809 * 5 4 3 32 32 H 1.09001 * 109.47313 * 60.00217 * 6 5 4 33 33 H 1.09001 * 109.47348 * 299.99992 * 6 5 4 34 34 H 0.96998 * 120.00075 * 179.97438 * 10 9 7 35 35 H 1.08998 * 110.48715 * 261.57733 * 17 15 2 36 36 H 1.09008 * 110.48470 * 24.22073 * 17 15 2 37 37 H 1.09003 * 110.74902 * 80.37751 * 18 17 15 38 38 H 1.08991 * 110.76261 * 203.56048 * 18 17 15 39 39 H 1.09005 * 110.48490 * 156.61480 * 19 18 17 40 40 H 1.09000 * 110.48797 * 279.12162 * 19 18 17 41 41 H 0.96695 * 114.00015 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7638 2.0067 -1.3725 5 6 2.3116 3.4353 -1.3723 6 6 2.0804 4.0702 -2.7450 7 6 2.6194 5.4776 -2.7446 8 1 3.0811 5.8788 -1.8546 9 6 2.5241 6.2526 -3.8810 10 7 1.9624 5.7639 -4.9650 11 14 3.1991 7.9944 -3.8829 12 1 2.9801 8.6087 -5.2170 13 1 2.5002 8.7973 -2.8475 14 1 4.6538 7.9618 -3.5858 15 6 1.9955 -0.7660 1.1375 16 1 1.8909 -0.1889 2.0563 17 6 1.2420 -2.1059 1.2665 18 6 2.3331 -3.1149 1.7030 19 6 3.5689 -2.6547 0.8905 20 6 3.4754 -1.1138 0.8991 21 1 4.0888 -0.7063 1.7027 22 8 3.9047 -0.5904 -0.3593 23 1 -0.3633 0.6132 -0.8247 24 1 -0.3633 -1.0208 -0.1187 25 1 -0.3633 0.4076 0.9434 26 1 3.0639 1.3505 0.2149 27 1 1.4828 1.9574 0.7628 28 1 0.6954 2.0276 -1.5875 29 1 2.2765 1.4207 -2.1354 30 1 3.3799 3.4147 -1.1572 31 1 1.7986 4.0210 -0.6096 32 1 1.0121 4.0908 -2.9606 33 1 2.5937 3.4844 -3.5075 34 1 1.8950 6.3092 -5.7644 35 1 0.4631 -2.0340 2.0256 36 1 0.8150 -2.3973 0.3068 37 1 2.5241 -3.0381 2.7734 38 1 2.0481 -4.1322 1.4350 39 1 4.4882 -2.9833 1.3754 40 1 3.5189 -3.0366 -0.1291 41 1 4.8302 -0.7771 -0.5679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708577103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:46 Heat of formation + Delta-G solvation = -66.140046 kcal Electronic energy + Delta-G solvation = -17766.846609 eV Core-core repulsion = 15066.871736 eV Total energy + Delta-G solvation = -2699.974873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -39.51077 -36.35066 -35.01290 -33.87299 -32.00589 -28.88968 -28.00890 -27.48986 -25.46471 -23.47200 -21.19188 -20.70680 -19.86980 -19.46196 -17.52546 -16.19063 -15.91496 -15.39166 -14.87038 -14.67024 -14.34044 -13.99216 -13.72027 -13.24538 -12.46167 -12.43339 -12.34872 -11.95418 -11.79659 -11.54724 -11.46597 -11.18993 -11.05126 -10.87597 -10.80119 -10.59849 -10.39857 -10.29147 -10.11279 -9.81548 -9.44917 -9.13863 -8.90526 -8.24846 -7.99508 -5.90173 -3.92038 3.38783 3.42606 3.45424 3.94013 4.34093 4.35321 4.50946 4.54070 4.87830 5.12010 5.18060 5.24979 5.40066 5.42409 5.44925 5.51765 5.60806 5.65365 5.72839 5.77840 5.80170 5.91915 5.97622 6.06525 6.12773 6.19743 6.36406 6.52102 6.71851 7.01632 7.17125 7.25377 7.32495 7.47139 7.80487 7.84038 7.99004 8.12452 8.55276 9.15563 9.71087 11.21197 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048883 B = 0.003928 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.663601 B = 7125.804921 C = 7372.487514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.516 5.516 3 C 0.064 3.936 4 C -0.106 4.106 5 C -0.108 4.108 6 C 0.022 3.978 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.288 1.288 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.084 3.916 16 H 0.044 0.956 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.155 4.155 20 C 0.108 3.892 21 H 0.051 0.949 22 O -0.532 6.532 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.017 0.983 26 H 0.079 0.921 27 H 0.019 0.981 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -17.947 14.072 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.063 4.063 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.015 4.015 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.213 1.213 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.025 4.025 16 H 0.062 0.938 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.193 4.193 20 C 0.048 3.952 21 H 0.068 0.932 22 O -0.335 6.335 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.097 0.903 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.379 -17.911 13.437 22.394 hybrid contribution 0.630 1.199 0.775 1.561 sum 1.009 -16.712 14.212 21.961 Atomic orbital electron populations 1.22509 0.88356 1.01824 1.00363 1.61958 1.06491 1.14739 1.40759 1.22200 1.00112 0.86164 0.97805 1.21566 1.00508 0.96701 0.95655 1.21581 0.99168 0.93246 1.00616 1.19079 0.96830 0.94772 0.90831 1.21281 1.38182 0.98674 0.97594 0.92891 1.25035 0.95540 0.98276 0.95696 1.69963 1.44541 1.36850 1.02271 0.86683 0.79522 0.84937 0.76988 1.21335 1.20337 1.20284 1.22338 0.93156 0.94582 0.92395 0.93781 1.22556 0.97487 0.93879 1.01993 1.22364 0.95220 0.98905 0.99483 1.23117 0.98176 0.96504 1.01457 1.22430 0.94491 0.91856 0.86470 0.93154 1.86859 1.31022 1.79033 1.36556 0.90852 0.91664 0.96423 0.90263 0.96292 0.93225 0.91557 0.93608 0.94052 0.96846 0.96604 0.93063 0.91750 0.89970 0.91621 0.91306 0.91808 0.90266 0.78856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.84 60.07 0.53 0.76 16 2 N -0.52 -7.42 3.94 -233.54 -0.92 -8.34 16 3 C 0.06 1.05 4.31 -3.82 -0.02 1.03 16 4 C -0.11 -2.03 5.27 -26.73 -0.14 -2.18 16 5 C -0.11 -2.40 5.15 -26.73 -0.14 -2.54 16 6 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 7 C -0.52 -15.40 9.11 -34.44 -0.31 -15.72 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -27.94 13.29 55.43 0.74 -27.21 16 11 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.08 1.00 2.72 -66.60 -0.18 0.82 16 16 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 17 C -0.12 -1.16 5.20 -25.07 -0.13 -1.29 16 18 C -0.12 -0.97 6.91 -24.74 -0.17 -1.14 16 19 C -0.15 -1.34 6.56 -25.02 -0.16 -1.50 16 20 C 0.11 1.16 3.87 -25.56 -0.10 1.06 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 O -0.53 -6.74 10.46 -35.23 -0.37 -7.11 16 23 H 0.07 1.03 6.49 -51.93 -0.34 0.69 16 24 H 0.06 0.73 6.24 -51.93 -0.32 0.41 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.08 1.31 6.24 -51.93 -0.32 0.98 16 27 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 28 H 0.05 0.95 6.65 -51.93 -0.35 0.60 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.86 6.78 -51.92 -0.35 0.51 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.37 3.20 9.11 45.56 0.42 3.62 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -32.56 318.26 -8.55 -41.11 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.72 Total: -1.86 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.06 Total: -18.68 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.18 Total: -35.55 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.37 Total: -7.11 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.56 -8.55 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708577103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.028 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds