Wall clock time and date at job start Mon Mar 30 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00295 * 2 1 4 4 C 1.53002 * 109.47178 * 287.92752 * 3 2 1 5 5 C 1.53003 * 109.47355 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47000 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46788 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00604 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99808 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00047 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99907 * 180.27503 * 9 7 6 12 12 H 1.48497 * 109.47177 * 179.72780 * 11 9 7 13 13 H 1.48501 * 109.47269 * 299.72890 * 11 9 7 14 14 H 1.48503 * 109.46756 * 59.72838 * 11 9 7 15 15 C 1.46899 * 111.00195 * 123.95732 * 2 1 3 16 16 H 1.09004 * 110.00930 * 284.43079 * 15 2 1 17 17 C 1.54261 * 110.03473 * 45.81910 * 15 2 1 18 18 C 1.54892 * 104.19723 * 142.89301 * 17 15 2 19 19 C 1.54885 * 102.74761 * 322.06538 * 18 17 15 20 20 C 1.53875 * 110.03411 * 163.04471 * 15 2 1 21 21 H 1.08998 * 110.03616 * 121.43077 * 20 15 2 22 22 O 1.42899 * 110.03280 * 359.97438 * 20 15 2 23 23 H 1.09003 * 109.47088 * 53.36635 * 1 2 3 24 24 H 1.09001 * 109.47077 * 173.36794 * 1 2 3 25 25 H 1.08999 * 109.46724 * 293.36564 * 1 2 3 26 26 H 1.08995 * 109.47662 * 167.92831 * 3 2 1 27 27 H 1.09001 * 109.46895 * 47.92349 * 3 2 1 28 28 H 1.09001 * 109.47428 * 59.99615 * 4 3 2 29 29 H 1.09004 * 109.47213 * 299.99996 * 4 3 2 30 30 H 1.08994 * 109.46840 * 59.99968 * 5 4 3 31 31 H 1.09001 * 109.47063 * 299.99809 * 5 4 3 32 32 H 1.09001 * 109.47313 * 60.00217 * 6 5 4 33 33 H 1.09001 * 109.47348 * 299.99992 * 6 5 4 34 34 H 0.96998 * 120.00075 * 179.97438 * 10 9 7 35 35 H 1.08998 * 110.48715 * 261.57733 * 17 15 2 36 36 H 1.09008 * 110.48470 * 24.22073 * 17 15 2 37 37 H 1.09003 * 110.74902 * 80.37751 * 18 17 15 38 38 H 1.08991 * 110.76261 * 203.56048 * 18 17 15 39 39 H 1.09005 * 110.48490 * 156.61480 * 19 18 17 40 40 H 1.09000 * 110.48797 * 279.12162 * 19 18 17 41 41 H 0.96695 * 114.00015 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7638 2.0067 -1.3725 5 6 2.3116 3.4353 -1.3723 6 6 2.0804 4.0702 -2.7450 7 6 2.6194 5.4776 -2.7446 8 1 3.0811 5.8788 -1.8546 9 6 2.5241 6.2526 -3.8810 10 7 1.9624 5.7639 -4.9650 11 14 3.1991 7.9944 -3.8829 12 1 2.9801 8.6087 -5.2170 13 1 2.5002 8.7973 -2.8475 14 1 4.6538 7.9618 -3.5858 15 6 1.9955 -0.7660 1.1375 16 1 1.8909 -0.1889 2.0563 17 6 1.2420 -2.1059 1.2665 18 6 2.3331 -3.1149 1.7030 19 6 3.5689 -2.6547 0.8905 20 6 3.4754 -1.1138 0.8991 21 1 4.0888 -0.7063 1.7027 22 8 3.9047 -0.5904 -0.3593 23 1 -0.3633 0.6132 -0.8247 24 1 -0.3633 -1.0208 -0.1187 25 1 -0.3633 0.4076 0.9434 26 1 3.0639 1.3505 0.2149 27 1 1.4828 1.9574 0.7628 28 1 0.6954 2.0276 -1.5875 29 1 2.2765 1.4207 -2.1354 30 1 3.3799 3.4147 -1.1572 31 1 1.7986 4.0210 -0.6096 32 1 1.0121 4.0908 -2.9606 33 1 2.5937 3.4844 -3.5075 34 1 1.8950 6.3092 -5.7644 35 1 0.4631 -2.0340 2.0256 36 1 0.8150 -2.3973 0.3068 37 1 2.5241 -3.0381 2.7734 38 1 2.0481 -4.1322 1.4350 39 1 4.4882 -2.9833 1.3754 40 1 3.5189 -3.0366 -0.1291 41 1 4.8302 -0.7771 -0.5679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708577103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:46 Heat of formation + Delta-G solvation = -88.076470 kcal Electronic energy + Delta-G solvation = -17767.797844 eV Core-core repulsion = 15066.871736 eV Total energy + Delta-G solvation = -2700.926108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41105 -37.55498 -36.21803 -35.44158 -33.93803 -30.52958 -28.89553 -28.49133 -27.01075 -25.07201 -22.64851 -21.72067 -21.45425 -20.42043 -18.43019 -18.40391 -16.83283 -16.59353 -16.52713 -16.03261 -15.56284 -15.16885 -14.78077 -14.51187 -14.10722 -13.82674 -13.66579 -13.27833 -13.20450 -12.88401 -12.74733 -12.57152 -12.42543 -12.14680 -12.05363 -11.92457 -11.86065 -11.55933 -11.37090 -11.30545 -11.17067 -10.92548 -10.65017 -10.54489 -9.09048 -8.18783 -6.30919 1.39336 1.43560 1.51514 2.41608 2.92732 3.13289 3.55370 3.59843 3.75356 4.11733 4.16688 4.24841 4.38827 4.40265 4.43524 4.53380 4.60730 4.62915 4.66886 4.76395 4.86252 4.92129 4.94578 5.00965 5.10970 5.13002 5.15729 5.22842 5.30593 5.31740 5.41576 5.45458 5.57451 5.78809 5.87164 6.24521 6.26040 6.29410 6.86069 7.10818 7.38153 8.93119 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048883 B = 0.003928 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.663601 B = 7125.804921 C = 7372.487514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.078 3.922 4 C -0.094 4.094 5 C -0.094 4.094 6 C 0.025 3.975 7 C -0.547 4.547 8 H 0.060 0.940 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.969 3.031 12 H -0.281 1.281 13 H -0.266 1.266 14 H -0.266 1.266 15 C 0.076 3.924 16 H 0.045 0.955 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.148 4.148 20 C 0.102 3.898 21 H 0.060 0.940 22 O -0.560 6.560 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.026 0.974 26 H 0.078 0.922 27 H 0.021 0.979 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.047 0.953 32 H -0.013 1.013 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -18.198 15.805 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.050 4.050 4 C -0.132 4.132 5 C -0.132 4.132 6 C -0.012 4.012 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.792 3.208 12 H -0.207 1.207 13 H -0.191 1.191 14 H -0.190 1.190 15 C -0.033 4.033 16 H 0.063 0.937 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.186 4.186 20 C 0.042 3.958 21 H 0.078 0.922 22 O -0.365 6.365 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.044 0.956 26 H 0.096 0.904 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.027 -18.183 15.188 23.714 hybrid contribution 0.414 1.235 0.206 1.319 sum 1.441 -16.948 15.394 22.941 Atomic orbital electron populations 1.22521 0.87703 1.02688 1.00083 1.61876 1.07238 1.13548 1.42655 1.21928 1.00236 0.87398 0.95436 1.21374 0.99655 0.94776 0.97385 1.21381 0.99629 0.94792 0.97416 1.18996 0.94587 0.94538 0.93071 1.21713 1.38738 0.99765 0.98227 0.92182 1.26055 0.95547 1.03402 0.95066 1.70109 1.45483 1.38883 1.03044 0.85454 0.79200 0.78654 0.77450 1.20676 1.19070 1.19036 1.22546 0.94241 0.95219 0.91293 0.93680 1.22533 0.98134 0.93012 1.01885 1.22376 0.93987 0.98893 1.00148 1.23045 0.99509 0.94819 1.01196 1.22581 0.93890 0.93287 0.86026 0.92188 1.86799 1.32453 1.79664 1.37623 0.92533 0.89910 0.95585 0.90361 0.96067 0.93688 0.93200 0.93242 0.93463 0.99439 0.99403 0.92742 0.90523 0.91091 0.90213 0.90183 0.89983 0.91435 0.77246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.84 127.69 1.13 1.58 16 2 N -0.53 -14.88 3.94 -892.78 -3.52 -18.40 16 3 C 0.08 2.50 4.31 86.30 0.37 2.87 16 4 C -0.09 -3.66 5.27 30.60 0.16 -3.50 16 5 C -0.09 -4.24 5.15 30.59 0.16 -4.08 16 6 C 0.03 1.43 4.97 29.85 0.15 1.58 16 7 C -0.55 -32.84 9.11 25.60 0.23 -32.61 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 10 N -0.93 -59.28 13.29 21.45 0.28 -59.00 16 11 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.08 1.67 2.72 45.64 0.12 1.80 16 16 H 0.05 0.99 8.07 -2.38 -0.02 0.97 16 17 C -0.12 -2.01 5.20 31.67 0.16 -1.85 16 18 C -0.12 -1.52 6.91 31.88 0.22 -1.30 16 19 C -0.15 -2.24 6.56 31.71 0.21 -2.03 16 20 C 0.10 2.03 3.87 31.36 0.12 2.15 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 O -0.56 -13.86 10.46 -148.98 -1.56 -15.42 16 23 H 0.06 1.59 6.49 -2.39 -0.02 1.58 16 24 H 0.08 1.77 6.24 -2.39 -0.01 1.76 16 25 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.08 2.53 6.24 -2.39 -0.01 2.52 16 27 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 28 H 0.04 1.77 6.65 -2.39 -0.02 1.76 16 29 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.38 6.78 -2.38 -0.02 1.36 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 41 H 0.38 6.45 9.11 -74.06 -0.67 5.78 16 Total: -1.00 -70.15 318.26 1.04 -69.11 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.30 Total: 11.16 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 3.50 Total: -35.13 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -3.24 Total: -77.40 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.56 Total: -15.42 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.15 1.04 -69.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708577103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.968 kcal (2) G-P(sol) polarization free energy of solvation -70.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds