Wall clock time and date at job start Mon Mar 30 2020 04:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47354 * 2 1 4 4 C 1.53004 * 109.46749 * 119.99435 * 2 1 3 5 5 N 1.46908 * 109.47036 * 174.21057 * 4 2 1 6 6 C 1.46902 * 110.99906 * 66.04343 * 5 4 2 7 7 C 1.46897 * 110.99779 * 190.00121 * 5 4 2 8 8 N 1.46902 * 109.47346 * 239.99417 * 2 1 3 9 9 C 1.46890 * 110.99810 * 72.17773 * 8 2 1 10 10 C 1.53241 * 109.34063 * 172.74708 * 9 8 2 11 11 N 1.47087 * 108.51838 * 53.82952 * 10 9 8 12 12 C 1.36932 * 120.87911 * 128.84255 * 11 10 9 13 13 H 1.08012 * 119.99922 * 331.32724 * 12 11 10 14 14 C 1.38806 * 120.00545 * 151.33445 * 12 11 10 15 15 N 1.31619 * 120.00788 * 161.71519 * 14 12 11 16 16 Si 1.86805 * 119.99384 * 341.71580 * 14 12 11 17 17 H 1.48507 * 109.47129 * 90.35987 * 16 14 12 18 18 H 1.48505 * 109.47040 * 210.35556 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.35755 * 16 14 12 20 20 C 1.47079 * 118.23833 * 308.81776 * 11 10 9 21 21 C 1.46900 * 110.99585 * 307.87742 * 8 2 1 22 22 H 1.08997 * 109.47454 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47127 * 300.00771 * 1 2 3 24 24 H 1.09007 * 109.46937 * 60.00496 * 1 2 3 25 25 H 1.09003 * 109.47317 * 294.20838 * 4 2 1 26 26 H 1.08995 * 109.46867 * 54.20817 * 4 2 1 27 27 H 1.08999 * 109.47105 * 60.00395 * 6 5 4 28 28 H 1.08996 * 109.46676 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.47124 * 299.99800 * 6 5 4 30 30 H 1.08999 * 109.47364 * 60.00153 * 7 5 4 31 31 H 1.09004 * 109.46757 * 180.02562 * 7 5 4 32 32 H 1.08998 * 109.47114 * 299.99692 * 7 5 4 33 33 H 1.08999 * 109.49588 * 292.70812 * 9 8 2 34 34 H 1.09007 * 109.49815 * 52.79147 * 9 8 2 35 35 H 1.09000 * 109.62681 * 294.12367 * 10 9 8 36 36 H 1.08997 * 109.63027 * 173.54032 * 10 9 8 37 37 H 0.96994 * 119.99935 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.62609 * 291.47576 * 20 11 10 39 39 H 1.08994 * 109.62901 * 170.89471 * 20 11 10 40 40 H 1.08998 * 109.49499 * 307.20788 * 21 8 2 41 41 H 1.08996 * 109.49347 * 67.29934 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5023 -0.8434 1.1816 6 6 4.1447 0.4758 1.2528 7 6 4.0058 -1.7319 2.2376 8 7 2.0197 -0.6926 -1.1994 9 6 1.7995 0.1198 -2.4032 10 6 2.4820 -0.5510 -3.6000 11 7 2.0060 -1.9397 -3.6912 12 6 1.5190 -2.4398 -4.8693 13 1 1.0489 -1.7793 -5.5830 14 6 1.6292 -3.7955 -5.1462 15 7 0.8706 -4.3419 -6.0726 16 14 2.8546 -4.8445 -4.2040 17 1 2.1992 -5.4059 -2.9954 18 1 3.3266 -5.9536 -5.0714 19 1 4.0119 -4.0081 -3.7962 20 6 2.0675 -2.7772 -2.4837 21 6 1.4013 -2.0186 -1.3308 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.7637 -0.1509 2.1363 26 1 1.5943 -1.7144 1.3028 27 1 3.8776 0.9598 2.1923 28 1 5.2268 0.3562 1.2010 29 1 3.8064 1.0902 0.4185 30 1 3.5665 -2.7223 2.1191 31 1 5.0910 -1.8042 2.1647 32 1 3.7337 -1.3279 3.2127 33 1 0.7297 0.2039 -2.5946 34 1 2.2218 1.1136 -2.2537 35 1 3.5625 -0.5430 -3.4571 36 1 2.2267 -0.0156 -4.5145 37 1 0.9480 -5.2891 -6.2663 38 1 3.1082 -2.9831 -2.2335 39 1 1.5382 -3.7135 -2.6601 40 1 1.5349 -2.5758 -0.4036 41 1 0.3372 -1.9048 -1.5373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713993788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:46 Heat of formation + Delta-G solvation = 48.821265 kcal Electronic energy + Delta-G solvation = -18939.364792 eV Core-core repulsion = 16276.667767 eV Total energy + Delta-G solvation = -2662.697026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.12200 -36.98619 -34.77424 -31.94916 -30.37699 -30.09627 -27.55889 -26.89842 -26.06074 -23.10166 -23.00172 -22.03405 -20.11311 -18.80510 -16.59285 -16.11202 -15.52762 -15.02504 -14.84595 -14.39467 -14.15437 -13.87613 -13.79081 -13.16129 -13.05348 -12.43144 -12.42394 -12.12435 -12.01282 -11.81535 -11.67250 -11.57566 -11.56995 -11.02270 -10.94145 -10.51226 -10.43194 -10.13897 -9.85824 -9.64868 -9.37509 -8.55820 -8.13727 -7.68267 -6.80495 -5.86448 -3.23102 3.40448 3.56034 3.63167 3.98420 4.40386 4.62300 4.87127 5.11847 5.12816 5.25178 5.32851 5.39773 5.44603 5.47500 5.52919 5.65149 5.66891 5.76899 5.88339 5.89382 5.93658 5.94981 6.01746 6.04494 6.17924 6.24375 6.33284 6.41701 6.55417 6.71999 6.81134 7.03971 7.12980 7.15970 7.68990 7.70298 8.06639 8.41668 9.03632 9.81241 10.23039 11.29930 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.007549 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.891869 B = 3708.196118 C = 4117.949653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.075 0.925 4 C 0.067 3.933 5 N -0.523 5.523 6 C 0.031 3.969 7 C 0.026 3.974 8 N -0.506 5.506 9 C 0.042 3.958 10 C 0.154 3.846 11 N -0.609 5.609 12 C -0.255 4.255 13 H 0.083 0.917 14 C 0.021 3.979 15 N -0.914 5.914 16 Si 0.888 3.112 17 H -0.289 1.289 18 H -0.306 1.306 19 H -0.269 1.269 20 C 0.132 3.868 21 C 0.047 3.953 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.073 0.927 27 H 0.014 0.986 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.016 0.984 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.061 0.939 37 H 0.261 0.739 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 8.982 16.482 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.027 4.027 3 H 0.093 0.907 4 C -0.062 4.062 5 N -0.246 5.246 6 C -0.118 4.118 7 C -0.122 4.122 8 N -0.229 5.229 9 C -0.088 4.088 10 C 0.028 3.972 11 N -0.334 5.334 12 C -0.384 4.384 13 H 0.101 0.899 14 C -0.178 4.178 15 N -0.558 5.558 16 Si 0.719 3.281 17 H -0.217 1.217 18 H -0.234 1.234 19 H -0.194 1.194 20 C 0.006 3.994 21 C -0.082 4.082 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.588 8.557 15.949 18.452 hybrid contribution -0.497 -0.232 1.220 1.338 sum 3.091 8.325 17.169 19.330 Atomic orbital electron populations 1.22450 0.97730 1.02554 1.01766 1.21720 0.91965 0.97707 0.91317 0.90732 1.22177 0.87989 1.00435 0.95563 1.61788 1.04861 1.11784 1.46146 1.22341 0.99457 0.90383 0.99579 1.22374 1.00796 0.97383 0.91676 1.62033 1.57365 1.02602 1.00936 1.22625 0.98696 0.95867 0.91589 1.20982 0.95886 0.85733 0.94643 1.44402 1.73461 1.08807 1.06719 1.18928 1.30966 0.93134 0.95349 0.89912 1.25306 0.98601 0.97021 0.96835 1.69817 1.39251 1.11869 1.34873 0.86891 0.83508 0.79670 0.78062 1.21670 1.23413 1.19369 1.21412 0.98033 0.94053 0.85885 1.22581 0.96395 0.90204 0.99044 0.91976 0.92854 0.92181 0.95246 0.90898 0.96763 0.91858 0.91008 0.91578 0.91603 0.96541 0.95216 0.92068 0.95247 0.92051 0.92894 0.94883 0.91243 0.91888 0.94935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 8.42 37.16 0.31 -2.02 16 2 C 0.08 1.11 2.06 -67.71 -0.14 0.97 16 3 H 0.07 0.95 6.62 -51.93 -0.34 0.61 16 4 C 0.07 0.83 4.17 -3.82 -0.02 0.81 16 5 N -0.52 -6.82 4.73 -251.25 -1.19 -8.01 16 6 C 0.03 0.35 9.32 60.07 0.56 0.91 16 7 C 0.03 0.29 9.57 60.06 0.57 0.86 16 8 N -0.51 -8.53 4.27 -226.34 -0.97 -9.50 16 9 C 0.04 0.72 5.29 -3.71 -0.02 0.70 16 10 C 0.15 3.20 6.69 -3.60 -0.02 3.17 16 11 N -0.61 -15.16 2.80 -172.01 -0.48 -15.64 16 12 C -0.26 -7.36 10.07 -15.06 -0.15 -7.52 16 13 H 0.08 2.54 8.06 -52.48 -0.42 2.11 16 14 C 0.02 0.62 5.27 -17.43 -0.09 0.52 16 15 N -0.91 -28.70 13.97 55.49 0.78 -27.93 16 16 Si 0.89 23.32 24.28 -169.99 -4.13 19.19 16 17 H -0.29 -7.29 6.56 56.52 0.37 -6.92 16 18 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 19 H -0.27 -7.05 6.61 56.52 0.37 -6.68 16 20 C 0.13 3.04 4.34 -3.60 -0.02 3.03 16 21 C 0.05 0.89 4.60 -3.70 -0.02 0.87 16 22 H 0.06 0.83 6.48 -51.93 -0.34 0.50 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.81 6.93 -51.93 -0.36 0.45 16 25 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 26 H 0.07 0.94 6.66 -51.93 -0.35 0.60 16 27 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.07 0.85 6.60 -51.93 -0.34 0.50 16 30 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.03 0.54 7.02 -51.93 -0.36 0.18 16 34 H 0.06 0.91 7.97 -51.92 -0.41 0.50 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.25 7.95 -51.93 -0.41 0.83 16 37 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 38 H 0.03 0.79 6.88 -51.93 -0.36 0.44 16 39 H 0.07 1.73 4.70 -51.93 -0.24 1.49 16 40 H 0.06 1.09 6.38 -51.93 -0.33 0.76 16 41 H 0.03 0.64 6.67 -51.93 -0.35 0.29 16 LS Contribution 302.40 15.07 4.56 4.56 Total: -1.00 -31.46 302.40 -7.65 -39.11 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -7.19 Total: -4.09 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 0.97 Total: 2.31 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -1.86 Total: -61.07 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.13 Total: 19.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.46 -7.65 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713993788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.931 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds