Wall clock time and date at job start Mon Mar 30 2020 04:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47354 * 2 1 4 4 C 1.53004 * 109.46749 * 119.99435 * 2 1 3 5 5 N 1.46908 * 109.47036 * 174.21057 * 4 2 1 6 6 C 1.46902 * 110.99906 * 66.04343 * 5 4 2 7 7 C 1.46897 * 110.99779 * 190.00121 * 5 4 2 8 8 N 1.46902 * 109.47346 * 239.99417 * 2 1 3 9 9 C 1.46890 * 110.99810 * 72.17773 * 8 2 1 10 10 C 1.53241 * 109.34063 * 172.74708 * 9 8 2 11 11 N 1.47087 * 108.51838 * 53.82952 * 10 9 8 12 12 C 1.36932 * 120.87911 * 128.84255 * 11 10 9 13 13 H 1.08012 * 119.99922 * 331.32724 * 12 11 10 14 14 C 1.38806 * 120.00545 * 151.33445 * 12 11 10 15 15 N 1.31619 * 120.00788 * 161.71519 * 14 12 11 16 16 Si 1.86805 * 119.99384 * 341.71580 * 14 12 11 17 17 H 1.48507 * 109.47129 * 90.35987 * 16 14 12 18 18 H 1.48505 * 109.47040 * 210.35556 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.35755 * 16 14 12 20 20 C 1.47079 * 118.23833 * 308.81776 * 11 10 9 21 21 C 1.46900 * 110.99585 * 307.87742 * 8 2 1 22 22 H 1.08997 * 109.47454 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47127 * 300.00771 * 1 2 3 24 24 H 1.09007 * 109.46937 * 60.00496 * 1 2 3 25 25 H 1.09003 * 109.47317 * 294.20838 * 4 2 1 26 26 H 1.08995 * 109.46867 * 54.20817 * 4 2 1 27 27 H 1.08999 * 109.47105 * 60.00395 * 6 5 4 28 28 H 1.08996 * 109.46676 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.47124 * 299.99800 * 6 5 4 30 30 H 1.08999 * 109.47364 * 60.00153 * 7 5 4 31 31 H 1.09004 * 109.46757 * 180.02562 * 7 5 4 32 32 H 1.08998 * 109.47114 * 299.99692 * 7 5 4 33 33 H 1.08999 * 109.49588 * 292.70812 * 9 8 2 34 34 H 1.09007 * 109.49815 * 52.79147 * 9 8 2 35 35 H 1.09000 * 109.62681 * 294.12367 * 10 9 8 36 36 H 1.08997 * 109.63027 * 173.54032 * 10 9 8 37 37 H 0.96994 * 119.99935 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.62609 * 291.47576 * 20 11 10 39 39 H 1.08994 * 109.62901 * 170.89471 * 20 11 10 40 40 H 1.08998 * 109.49499 * 307.20788 * 21 8 2 41 41 H 1.08996 * 109.49347 * 67.29934 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5023 -0.8434 1.1816 6 6 4.1447 0.4758 1.2528 7 6 4.0058 -1.7319 2.2376 8 7 2.0197 -0.6926 -1.1994 9 6 1.7995 0.1198 -2.4032 10 6 2.4820 -0.5510 -3.6000 11 7 2.0060 -1.9397 -3.6912 12 6 1.5190 -2.4398 -4.8693 13 1 1.0489 -1.7793 -5.5830 14 6 1.6292 -3.7955 -5.1462 15 7 0.8706 -4.3419 -6.0726 16 14 2.8546 -4.8445 -4.2040 17 1 2.1992 -5.4059 -2.9954 18 1 3.3266 -5.9536 -5.0714 19 1 4.0119 -4.0081 -3.7962 20 6 2.0675 -2.7772 -2.4837 21 6 1.4013 -2.0186 -1.3308 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.7637 -0.1509 2.1363 26 1 1.5943 -1.7144 1.3028 27 1 3.8776 0.9598 2.1923 28 1 5.2268 0.3562 1.2010 29 1 3.8064 1.0902 0.4185 30 1 3.5665 -2.7223 2.1191 31 1 5.0910 -1.8042 2.1647 32 1 3.7337 -1.3279 3.2127 33 1 0.7297 0.2039 -2.5946 34 1 2.2218 1.1136 -2.2537 35 1 3.5625 -0.5430 -3.4571 36 1 2.2267 -0.0156 -4.5145 37 1 0.9480 -5.2891 -6.2663 38 1 3.1082 -2.9831 -2.2335 39 1 1.5382 -3.7135 -2.6601 40 1 1.5349 -2.5758 -0.4036 41 1 0.3372 -1.9048 -1.5373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713993788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:45 Heat of formation + Delta-G solvation = 25.217005 kcal Electronic energy + Delta-G solvation = -18940.388350 eV Core-core repulsion = 16276.667767 eV Total energy + Delta-G solvation = -2663.720583 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43420 -38.23598 -36.30766 -33.90863 -32.02464 -31.62699 -28.40075 -27.83973 -27.82283 -24.76896 -24.67223 -23.17737 -21.50434 -20.30473 -18.57804 -17.63560 -16.58440 -16.47378 -15.99603 -15.87740 -15.69034 -15.36807 -15.20101 -14.82644 -14.46313 -13.93884 -13.84408 -13.38498 -13.32516 -13.07585 -12.90956 -12.80211 -12.67863 -12.49252 -12.16618 -12.10101 -12.01230 -11.96013 -11.47644 -11.40909 -11.25846 -10.71187 -9.14133 -9.01645 -8.76359 -8.16224 -5.49220 1.30223 1.41382 1.52530 2.42336 2.92053 3.10013 3.25089 3.41377 3.85957 4.10009 4.28017 4.32591 4.37741 4.42994 4.49933 4.52098 4.55981 4.58846 4.63202 4.68222 4.74796 4.77071 4.83542 4.89682 4.91093 5.03546 5.07658 5.09194 5.12886 5.18176 5.27732 5.39195 5.86038 6.11133 6.20330 6.28776 6.31086 6.47945 6.92426 7.62727 8.07320 9.03961 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.007549 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.891869 B = 3708.196118 C = 4117.949653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 H 0.089 0.911 4 C 0.071 3.929 5 N -0.549 5.549 6 C 0.034 3.966 7 C 0.028 3.972 8 N -0.511 5.511 9 C 0.053 3.947 10 C 0.148 3.852 11 N -0.623 5.623 12 C -0.246 4.246 13 H 0.052 0.948 14 C -0.035 4.035 15 N -0.959 5.959 16 Si 0.951 3.049 17 H -0.273 1.273 18 H -0.310 1.310 19 H -0.268 1.268 20 C 0.130 3.870 21 C 0.062 3.938 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.093 0.907 35 H 0.032 0.968 36 H 0.058 0.942 37 H 0.261 0.739 38 H 0.029 0.971 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 10.100 19.258 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.024 4.024 3 H 0.107 0.893 4 C -0.058 4.058 5 N -0.273 5.273 6 C -0.115 4.115 7 C -0.120 4.120 8 N -0.235 5.235 9 C -0.076 4.076 10 C 0.024 3.976 11 N -0.349 5.349 12 C -0.376 4.376 13 H 0.069 0.931 14 C -0.229 4.229 15 N -0.606 5.606 16 Si 0.780 3.220 17 H -0.200 1.200 18 H -0.239 1.239 19 H -0.192 1.192 20 C 0.005 3.995 21 C -0.067 4.067 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.377 9.711 18.774 21.585 hybrid contribution -0.744 -0.467 0.362 0.950 sum 3.633 9.243 19.136 21.560 Atomic orbital electron populations 1.22383 0.96999 1.02053 1.02503 1.21814 0.92492 0.98117 0.89969 0.89322 1.22119 0.87879 1.00207 0.95551 1.61775 1.05221 1.12885 1.47422 1.22311 0.99440 0.89673 1.00028 1.22354 1.00899 0.96875 0.91875 1.61992 1.57568 1.01982 1.01910 1.22453 0.97828 0.96855 0.90457 1.21156 0.96238 0.83804 0.96452 1.44550 1.73754 1.10493 1.06081 1.18880 1.29739 0.92789 0.96176 0.93062 1.25909 1.00249 0.98406 0.98347 1.69940 1.41105 1.12241 1.37310 0.85863 0.81046 0.77824 0.77224 1.19973 1.23870 1.19243 1.21392 0.97765 0.93739 0.86651 1.22305 0.95252 0.91309 0.97858 0.93101 0.90323 0.93239 0.93265 0.91582 0.95343 0.91709 0.91605 0.92081 0.91311 0.95187 0.96145 0.88859 0.95018 0.92400 0.92962 0.95339 0.93423 0.89994 0.95907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.00 8.42 71.98 0.61 -3.40 16 2 C 0.08 1.99 2.06 44.92 0.09 2.08 16 3 H 0.09 1.88 6.62 -2.38 -0.02 1.87 16 4 C 0.07 1.51 4.17 86.30 0.36 1.87 16 5 N -0.55 -12.57 4.73 -948.83 -4.48 -17.06 16 6 C 0.03 0.64 9.32 127.69 1.19 1.83 16 7 C 0.03 0.54 9.57 127.69 1.22 1.76 16 8 N -0.51 -15.93 4.27 -870.01 -3.71 -19.64 16 9 C 0.05 1.73 5.29 86.39 0.46 2.19 16 10 C 0.15 6.04 6.69 86.35 0.58 6.62 16 11 N -0.62 -30.96 2.80 -698.12 -1.95 -32.91 16 12 C -0.25 -14.52 10.07 84.03 0.85 -13.67 16 13 H 0.05 3.28 8.06 -2.90 -0.02 3.26 16 14 C -0.03 -2.09 5.27 84.86 0.45 -1.65 16 15 N -0.96 -61.85 13.97 21.65 0.30 -61.54 16 16 Si 0.95 48.90 24.28 68.60 1.67 50.56 16 17 H -0.27 -13.21 6.56 99.48 0.65 -12.56 16 18 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 19 H -0.27 -13.55 6.61 99.48 0.66 -12.89 16 20 C 0.13 5.86 4.34 86.35 0.37 6.24 16 21 C 0.06 2.24 4.60 86.38 0.40 2.63 16 22 H 0.05 1.25 6.48 -2.39 -0.02 1.23 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.21 6.93 -2.38 -0.02 1.19 16 25 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 26 H 0.07 1.50 6.66 -2.39 -0.02 1.48 16 27 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 29 H 0.07 1.33 6.60 -2.39 -0.02 1.31 16 30 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 31 H 0.07 1.25 8.12 -2.38 -0.02 1.23 16 32 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.02 0.71 7.02 -2.39 -0.02 0.69 16 34 H 0.09 2.47 7.97 -2.38 -0.02 2.45 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 37 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.03 1.32 6.88 -2.39 -0.02 1.31 16 39 H 0.05 2.35 4.70 -2.39 -0.01 2.34 16 40 H 0.08 2.64 6.38 -2.39 -0.02 2.63 16 41 H 0.02 0.87 6.67 -2.39 -0.02 0.85 16 Total: -1.00 -67.95 302.40 -0.73 -68.68 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 0.87 Total: 5.40 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.57 Total: 6.51 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -9.85 Total: -131.15 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 1.67 Total: 50.56 kcal Total: -67.95 -0.73 -68.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713993788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.901 kcal (2) G-P(sol) polarization free energy of solvation -67.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds