Wall clock time and date at job start Mon Mar 30 2020 05:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86796 * 120.00084 * 2 1 4 4 H 1.48502 * 109.47293 * 239.99633 * 3 2 1 5 5 H 1.48497 * 109.47533 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46772 * 120.00381 * 3 2 1 7 7 C 1.39585 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36126 * 120.00106 * 359.71741 * 7 2 1 10 10 C 1.34769 * 119.99956 * 180.27612 * 9 7 2 11 11 O 1.21503 * 120.00188 * 0.02562 * 10 9 7 12 12 C 1.48835 * 120.00100 * 180.02562 * 10 9 7 13 13 O 1.21443 * 119.99673 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00308 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 10 16 16 H 1.08997 * 109.23250 * 15.56316 * 15 14 12 17 17 C 1.49585 * 109.23896 * 135.00421 * 15 14 12 18 18 C 1.31734 * 116.78041 * 100.67010 * 17 15 14 19 19 S 1.77524 * 106.95798 * 0.23481 * 18 17 15 20 20 N 1.48310 * 109.24377 * 256.20836 * 15 14 12 21 21 H 0.97009 * 119.99858 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99691 * 0.28727 * 9 7 2 23 23 H 0.97000 * 119.99549 * 0.02562 * 14 12 10 24 24 H 1.07993 * 121.60670 * 280.64099 * 17 15 14 25 25 H 1.08009 * 126.51821 * 180.23436 * 18 17 15 26 26 H 1.00896 * 110.99795 * 24.89909 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0980 1.6963 -1.2125 5 1 1.2793 2.7465 0.0006 6 1 3.0980 1.6962 1.2125 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2090 -0.0001 9 7 1.3273 -2.3877 0.0047 10 6 2.0011 -3.5549 0.0098 11 8 3.2161 -3.5550 0.0102 12 6 1.2569 -4.8438 0.0151 13 8 0.0425 -4.8437 0.0142 14 7 1.9307 -6.0111 0.0196 15 6 1.1981 -7.2797 0.0242 16 1 0.1601 -7.0959 -0.2529 17 6 1.8168 -8.2097 -0.9707 18 6 2.6230 -9.1368 -0.4952 19 16 2.6722 -8.9260 1.2668 20 7 1.2424 -7.8648 1.3863 21 1 -0.4850 0.8401 0.0004 22 1 0.3573 -2.3876 0.0047 23 1 2.9007 -6.0110 0.0199 24 1 1.6121 -8.1255 -2.0277 25 1 3.1531 -9.8831 -1.0684 26 1 1.3810 -7.1485 2.0832 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725635946.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:07 Heat of formation + Delta-G solvation = -51.287568 kcal Electronic energy + Delta-G solvation = -14880.689634 eV Core-core repulsion = 12085.760578 eV Total energy + Delta-G solvation = -2794.929056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.58954 -39.59835 -38.24455 -36.38437 -34.17812 -33.43912 -32.36711 -28.16016 -26.47279 -24.27124 -21.50797 -21.31596 -20.47365 -19.57143 -18.53901 -18.02994 -17.22646 -16.84712 -16.46139 -16.01353 -15.72335 -15.16998 -14.79369 -14.65178 -13.92881 -13.71507 -13.59464 -12.98820 -12.82902 -12.61464 -12.31768 -12.13649 -11.76333 -11.69017 -11.17494 -10.66177 -10.35607 -10.32025 -8.70707 -8.48645 -6.15101 0.36974 0.40648 0.61928 0.95249 1.40219 1.47229 1.52800 1.76200 2.25987 2.28428 2.99724 3.10736 3.13119 3.82518 3.91652 4.18815 4.61814 4.67762 4.90091 5.03364 5.21247 5.21899 5.61361 5.97114 6.27289 6.67378 6.88782 7.20993 7.73973 8.44813 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.059563 B = 0.004877 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.980386 B = 5739.951080 C = 5919.362979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.002 4.002 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.505 5.505 10 C 0.385 3.615 11 O -0.616 6.616 12 C 0.530 3.470 13 O -0.554 6.554 14 N -0.708 5.708 15 C 0.292 3.708 16 H 0.129 0.871 17 C -0.202 4.202 18 C -0.089 4.089 19 S -0.025 6.025 20 N -0.584 5.584 21 H 0.290 0.710 22 H 0.401 0.599 23 H 0.415 0.585 24 H 0.176 0.824 25 H 0.217 0.783 26 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 -13.450 -1.337 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.476 4.476 8 H 0.118 0.882 9 N -0.139 5.139 10 C 0.170 3.830 11 O -0.506 6.506 12 C 0.313 3.687 13 O -0.431 6.431 14 N -0.365 5.365 15 C 0.098 3.902 16 H 0.146 0.854 17 C -0.234 4.234 18 C -0.221 4.221 19 S 0.103 5.897 20 N -0.311 5.311 21 H 0.101 0.899 22 H 0.236 0.764 23 H 0.253 0.747 24 H 0.193 0.807 25 H 0.234 0.766 26 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.194 -14.103 -0.356 14.464 hybrid contribution -0.011 1.846 -0.834 2.026 sum 3.182 -12.257 -1.190 12.719 Atomic orbital electron populations 1.69538 1.07835 1.31059 1.44510 1.26552 0.96497 1.03507 0.94179 0.84754 0.77787 0.74719 0.79711 1.18745 1.19075 1.18850 1.19979 0.93784 0.83011 1.50804 0.88185 1.41657 1.10276 1.04763 1.57160 1.19484 0.87869 0.85051 0.90639 1.90566 1.13717 1.87088 1.59237 1.20214 0.87027 0.85883 0.75572 1.90709 1.14388 1.88110 1.49899 1.46535 1.11808 1.04322 1.73832 1.21724 0.99753 0.81544 0.87203 0.85374 1.23345 1.02425 0.95896 1.01737 1.25971 0.99714 1.01441 0.94980 1.86509 1.35126 1.59400 1.08645 1.67988 1.30934 1.24770 1.07405 0.89940 0.76397 0.74727 0.80672 0.76645 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.94 13.03 21.76 0.28 -46.66 15 2 C 0.00 -0.12 5.51 85.14 0.47 0.35 15 3 Si 1.01 39.82 29.56 68.60 2.03 41.85 15 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 5 H -0.27 -9.85 7.11 99.48 0.71 -9.15 15 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 7 C -0.35 -19.05 9.67 84.35 0.82 -18.23 15 8 H 0.10 5.65 7.15 -2.91 -0.02 5.63 15 9 N -0.50 -26.99 5.25 -308.87 -1.62 -28.61 15 10 C 0.38 19.12 7.82 87.08 0.68 19.80 15 11 O -0.62 -32.70 16.03 -3.73 -0.06 -32.76 15 12 C 0.53 22.01 7.87 87.08 0.69 22.70 15 13 O -0.55 -24.77 15.86 -3.54 -0.06 -24.82 15 14 N -0.71 -22.77 4.90 -456.87 -2.24 -25.01 15 15 C 0.29 7.83 3.75 127.78 0.48 8.31 15 16 H 0.13 3.84 7.03 -2.39 -0.02 3.82 15 17 C -0.20 -3.97 9.95 24.62 0.24 -3.73 15 18 C -0.09 -1.45 11.41 67.10 0.77 -0.68 15 19 S -0.03 -0.55 23.85 -56.49 -1.35 -1.89 15 20 N -0.58 -15.25 8.29 -179.14 -1.48 -16.74 15 21 H 0.29 14.01 8.30 -92.70 -0.77 13.24 15 22 H 0.40 21.64 7.35 -92.71 -0.68 20.96 15 23 H 0.42 13.05 8.25 -92.71 -0.76 12.29 15 24 H 0.18 2.71 8.06 -2.91 -0.02 2.68 15 25 H 0.22 1.80 8.06 -2.91 -0.02 1.78 15 26 H 0.37 10.03 8.73 -91.22 -0.80 9.24 15 Total: -1.00 -63.20 256.99 -1.33 -64.53 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -0.98 Total: 41.60 kcal Atomic # 6 Polarization: 24.37 SS G_CDS: 4.14 Total: 28.51 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -5.06 Total: -117.01 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -0.12 Total: -57.59 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -1.35 Total: -1.89 kcal Total: -63.20 -1.33 -64.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725635946.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.244 kcal (2) G-P(sol) polarization free energy of solvation -63.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds